Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d029849_T020
CDS Infomation

cds chromosome:B73_RefGen_v4:1:89948121:89952500:1 gene:Zm00001d029849 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related
Sequence

ATGGAGGATGAATTGGAAAAATTAATGCTGCTGAAGAAATTTCCAAATGATGAGGTTCAG
AGAAGAAAAGCCGACCTGGGAATTGATGTCTCTCTTGATACGATTTCAGAGCATACAAAT
AAATCAACAGATAACTCATATCACCAGGCAGGAATCTCTACGCCTTCAACTCCATCAATG
GATTATGGGGTTTTGAATTATACTGAAGAATATAATCTTGAATCTGTGCTGGTGAATTTT
CTAGGTGAAATATATAGTTGTCACAATGAATGCCCACACAGTGATTGCAAGAACAAGAAT
GAATTGTGTCCTTCACTGAAGTCCCTAATCCATAAAAAGGTCAATGAATTGAATAATCTT
CCCCACAATATTGGCCGTGGGCAATCTCAAGAGGGCAGTGATGCTAAGCCATCTGACCAA
AATAATCTTTATAACACCATGGCAGCCCAATCCAAACAATTCAAGGATGCATTGGAAATA
CTGGGTTCGAACAGTGAACTTTTTGTGAAGCTGCTTCAGAAGCCAAATCAACATATAGCT
GATAGTATCCAACAGCATGAAAACAGTAAGGTGTCTGCTGGATTAGAGCCTGACAAAATT
CATGGACAGACCAATTTTGTTGGAGGAAGAGGAAGCTCAAAACAGCATCCTTTGGCTACA
AAAGAGCAGGCTAAAGAGAGAAAATATATGTTCTTCTGGAGGAAGAGTAAATCAAATAGA
AGGCAGATGCTTGACGCAACAGATGGAGCTCAGACTGTTAGCAAAATTGTTATTCTGAAG
CCAAATCCAGAAAGAGGGATTAATCAGAAAGCAGCTACTGCAAGAACTTTACATCAACAG
CCATGTACATCGAATGCTCCTGGATGCAGTGGAAGGGAAAACTCAAAGTTTTCAATTAAG
GAAGTCAAGAAAAGATTCAGATTTGTGACTGGTGAGAGAAGTGAAAGAAATTTGTCACCT
GCAGAGGACCTTCAAGGAGACCCACGTAAGATCAAAGATTCTGTTGTTGCAATTAATAAA
TATTTTAGACATCTCCCTGAAGGGAGCTTGGCAAACAAGTCTGCATCAGACATTGAGAAT
GGCATCAAACCTTTTATCAGCAGTAAGCAAAAGAATCAAAATGGGAGCATAACTGAAATC
AGTGGCCATATAGTAGCACCAAAAGGTGCATCTGTATTTTATGAAGAGGCCAGGAGGCAT
TTATCAGAGATGCTAAAAGGTAATGACTGTTCCATAAACTATCCAGAAGTTCAAATATCA
AAATCCTTGGAAGGCATACTTTCTCTTCCTCATGGCAATGTGTCAACCACTGGGAGTAGC
CTGAGGGGAAAGGATTACCTTGACCCCTCACCTGGAGAAACAGATGTTTACGATGCATGT
GAGGTTGAGAGAGAAGAATGCACACAAGAGAGAAGCCAATCACAAGAGGATTTTGGAAGC
ATTGCTCACTGTACTTGCACAACAGTTGATGATCAGGTGACAGTTCGAGAAGGATATTAC
ACGAATGAAGCACAAGAAGCAAGACATGCTCATGATGAGCCAGACACTCTGTATATTGAA
GGACTTGATAAATTCATTTGCCGCGAAAACATTCGCAACGAAGAGTCCAGTCCAGCAGAA
CAAAGCAGAGACGATGAGATACTAGAAGAAATAAATCAGGGAAAAGAGCATGTTAAAATG
TCCCTAGCTTCTGTTGAGGGCATAGATGAAAAGTTGGGGCAGCAAGAGCCAGAAACACCG
GAACCAAGAGCATCAGCCAAATTAATCTCAGACGGTTCTCCTAATCAAAGCGATGAAAAG
CAAGAGAGGCCCAGTCCAGTATCTGTTCTTGAGTCATCCTTCGAAGATATTGGCAGTCCA
GACTGCATAAACAAGAAAGAGTGTGAGCTGCATGGTCTCCAAAGGACCCTGTATTTTCCA
GATAATGAACCAGACGTTAATGTCCTTTGGGAGGACAAGAATGTCAGGTTGGACTACATA
AAGCTGGTGCTAGAACTCTCAGAACTGTGCGCAGAACAAAATCTAGAGGTATGGTACCTA
GAAGACGAGTTGATCAGCCCCTGCTTGTTTGAAGAACTACAGAGCCAGGGTGATCAGACG
GATGATCGAATGCTTCTGTTTGACTGTATCTGTGAAGCTCTAACAGAGATCCAAGAGAGA
TATTTTAGACTCTCCTCTTGGCTAACTTTTCTAAAACACGACATACGGACACCTCCGACA
GGAGAGAACCTAATCACAGAAGTTGATAGGTACGTTAACGGGTATATTATCCAGTACAGT
CTTCCAAGTACTCTAGAGCAGACAATTAAAAGGGATCTGGAAGTTCAGACGTGGATGAAC
ATTAGATCGAAAACCGAAGGGATTATTATGGAGATGTGGGAGTTTGTATTGGATGAGTTG
ATAGATGAGACTGTCTCCGATTTGTGGATTTGA

Peptide Sequence

PEP ID

Zm00001d029849_P020
PEP Infomation

pep chromosome:B73_RefGen_v4:1:89948121:89952500:1 gene:Zm00001d029849 transcript:Zm00001d029849_T020 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related
Sequence

MEDELEKLMLLKKFPNDEVQRRKADLGIDVSLDTISEHTNKSTDNSYHQAGISTPSTPSM
DYGVLNYTEEYNLESVLVNFLGEIYSCHNECPHSDCKNKNELCPSLKSLIHKKVNELNNL
PHNIGRGQSQEGSDAKPSDQNNLYNTMAAQSKQFKDALEILGSNSELFVKLLQKPNQHIA
DSIQQHENSKVSAGLEPDKIHGQTNFVGGRGSSKQHPLATKEQAKERKYMFFWRKSKSNR
RQMLDATDGAQTVSKIVILKPNPERGINQKAATARTLHQQPCTSNAPGCSGRENSKFSIK
EVKKRFRFVTGERSERNLSPAEDLQGDPRKIKDSVVAINKYFRHLPEGSLANKSASDIEN
GIKPFISSKQKNQNGSITEISGHIVAPKGASVFYEEARRHLSEMLKGNDCSINYPEVQIS
KSLEGILSLPHGNVSTTGSSLRGKDYLDPSPGETDVYDACEVEREECTQERSQSQEDFGS
IAHCTCTTVDDQVTVREGYYTNEAQEARHAHDEPDTLYIEGLDKFICRENIRNEESSPAE
QSRDDEILEEINQGKEHVKMSLASVEGIDEKLGQQEPETPEPRASAKLISDGSPNQSDEK
QERPSPVSVLESSFEDIGSPDCINKKECELHGLQRTLYFPDNEPDVNVLWEDKNVRLDYI
KLVLELSELCAEQNLEVWYLEDELISPCLFEELQSQGDQTDDRMLLFDCICEALTEIQER
YFRLSSWLTFLKHDIRTPPTGENLITEVDRYVNGYIIQYSLPSTLEQTIKRDLEVQTWMN
IRSKTEGIIMEMWEFVLDELIDETVSDLWI

Transcript Sequence

Transcript ID

Zm00001d029849_T020
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:89948121:89952500:1 gene:Zm00001d029849 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related
Sequence

CAGTGTTCATCAGGTGCAGCTTGCGCGGATCCCCCTCATGAACTGAGCAATCGATAGAAG
AAACAAAAAGGGCCATTTCCGCTACAGAAAATAAATCATCAGGAATGGGAAAACGAGGCC
ACAGGCGGTCTGCATCACAAGACGACGACAATGTGGGCTGTGTGTGGGGCCTCATGCGCA
TGCTTTACTTCCGCCGAGACCCCAAACTTTTGCTGGATGCGAAGCAGTTGAGTGGGAGGC
ATGCGTTCCGGGAGGGAGGGGGCATTCAGCAAAGAGGCCAAATGATTTTGACGGGATAGA
AGAAGATGGTAACATAGAAGATCGCACTTTGCAGAAACCGACAGTAAAAAACCTTATGGA
GGATGAATTGGAAAAATTAATGCTGCTGAAGAAATTTCCAAATGATGAGGTTCAGAGAAG
AAAAGCCGACCTGGGAATTGATGTCTCTCTTGATACGATTTCAGAGCATACAAATAAATC
AACAGATAACTCATATCACCAGGCAGGAATCTCTACGCCTTCAACTCCATCAATGGATTA
TGGGGTTTTGAATTATACTGAAGAATATAATCTTGAATCTGTGCTGGTGAATTTTCTAGG
TGAAATATATAGTTGTCACAATGAATGCCCACACAGTGATTGCAAGAACAAGAATGAATT
GTGTCCTTCACTGAAGTCCCTAATCCATAAAAAGGTCAATGAATTGAATAATCTTCCCCA
CAATATTGGCCGTGGGCAATCTCAAGAGGGCAGTGATGCTAAGCCATCTGACCAAAATAA
TCTTTATAACACCATGGCAGCCCAATCCAAACAATTCAAGGATGCATTGGAAATACTGGG
TTCGAACAGTGAACTTTTTGTGAAGCTGCTTCAGAAGCCAAATCAACATATAGCTGATAG
TATCCAACAGCATGAAAACAGTAAGGTGTCTGCTGGATTAGAGCCTGACAAAATTCATGG
ACAGACCAATTTTGTTGGAGGAAGAGGAAGCTCAAAACAGCATCCTTTGGCTACAAAAGA
GCAGGCTAAAGAGAGAAAATATATGTTCTTCTGGAGGAAGAGTAAATCAAATAGAAGGCA
GATGCTTGACGCAACAGATGGAGCTCAGACTGTTAGCAAAATTGTTATTCTGAAGCCAAA
TCCAGAAAGAGGGATTAATCAGAAAGCAGCTACTGCAAGAACTTTACATCAACAGCCATG
TACATCGAATGCTCCTGGATGCAGTGGAAGGGAAAACTCAAAGTTTTCAATTAAGGAAGT
CAAGAAAAGATTCAGATTTGTGACTGGTGAGAGAAGTGAAAGAAATTTGTCACCTGCAGA
GGACCTTCAAGGAGACCCACGTAAGATCAAAGATTCTGTTGTTGCAATTAATAAATATTT
TAGACATCTCCCTGAAGGGAGCTTGGCAAACAAGTCTGCATCAGACATTGAGAATGGCAT
CAAACCTTTTATCAGCAGTAAGCAAAAGAATCAAAATGGGAGCATAACTGAAATCAGTGG
CCATATAGTAGCACCAAAAGGTGCATCTGTATTTTATGAAGAGGCCAGGAGGCATTTATC
AGAGATGCTAAAAGGTAATGACTGTTCCATAAACTATCCAGAAGTTCAAATATCAAAATC
CTTGGAAGGCATACTTTCTCTTCCTCATGGCAATGTGTCAACCACTGGGAGTAGCCTGAG
GGGAAAGGATTACCTTGACCCCTCACCTGGAGAAACAGATGTTTACGATGCATGTGAGGT
TGAGAGAGAAGAATGCACACAAGAGAGAAGCCAATCACAAGAGGATTTTGGAAGCATTGC
TCACTGTACTTGCACAACAGTTGATGATCAGGTGACAGTTCGAGAAGGATATTACACGAA
TGAAGCACAAGAAGCAAGACATGCTCATGATGAGCCAGACACTCTGTATATTGAAGGACT
TGATAAATTCATTTGCCGCGAAAACATTCGCAACGAAGAGTCCAGTCCAGCAGAACAAAG
CAGAGACGATGAGATACTAGAAGAAATAAATCAGGGAAAAGAGCATGTTAAAATGTCCCT
AGCTTCTGTTGAGGGCATAGATGAAAAGTTGGGGCAGCAAGAGCCAGAAACACCGGAACC
AAGAGCATCAGCCAAATTAATCTCAGACGGTTCTCCTAATCAAAGCGATGAAAAGCAAGA
GAGGCCCAGTCCAGTATCTGTTCTTGAGTCATCCTTCGAAGATATTGGCAGTCCAGACTG
CATAAACAAGAAAGAGTGTGAGCTGCATGGTCTCCAAAGGACCCTGTATTTTCCAGATAA
TGAACCAGACGTTAATGTCCTTTGGGAGGACAAGAATGTCAGGTTGGACTACATAAAGCT
GGTGCTAGAACTCTCAGAACTGTGCGCAGAACAAAATCTAGAGGTATGGTACCTAGAAGA
CGAGTTGATCAGCCCCTGCTTGTTTGAAGAACTACAGAGCCAGGGTGATCAGACGGATGA
TCGAATGCTTCTGTTTGACTGTATCTGTGAAGCTCTAACAGAGATCCAAGAGAGATATTT
TAGACTCTCCTCTTGGCTAACTTTTCTAAAACACGACATACGGACACCTCCGACAGGAGA
GAACCTAATCACAGAAGTTGATAGGTACGTTAACGGGTATATTATCCAGTACAGTCTTCC
AAGTACTCTAGAGCAGACAATTAAAAGGGATCTGGAAGTTCAGACGTGGATGAACATTAG
ATCGAAAACCGAAGGGATTATTATGGAGATGTGGGAGTTTGTATTGGATGAGTTGATAGA
TGAGACTGTCTCCGATTTGTGGATTTGAAGTTCTGATTAGGCTTCGTCCATGGTGCCTCT
GTGGCGAGCATAGTGAGTAGGATACAGGAGTTCTTTCGTGCTGAAAAATAACCAGTTCTA
TGCGGCAGAATAGCATGGGCTACCGCTAGCCAAGTGTGTAACTGCAGTGGAGATCGTTCT
CGTGTAGTCGTGTGGAGGAGAACAGAAGTCTAGGTTCAGCAGATCTCCAGAGCTGTGAAG
TTTGCGTGGATGAAGTTGGGCACGGTTTGTCTCACAGCCATGCCTCTGCACGGCGAAGTG
TACAGCAGATTTGGGAGCTTGTGTGTGCATGTGTGATGCGTGCACTTTTCAGCGTGATCA
GATCGCGCTTGTTTTTTTATAGGTTTGTTTTGTGTGTAAATGTGAAAAAAAGAGAGAAAG
CAAACATACATGATTAATCAAATGACA