Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d029840_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:1:89587941:89589851:1 gene:Zm00001d029840 gene_biotype:protein_coding transcript_biotype:protein_coding description:Short-chain dehydrogenase TIC 32 chloroplastic
Sequence

ATGGCCGTCCGCAACGTCTCCGCCGGGCTCAAGGCCAGGGAGGCCATCGTGGCTAAGATC
CCCGTCGCACGGATTGACGTTCTGGAGCTGGACCTCAGCTCCATAGCTTCCGTAAGGAGA
TTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATTCTCATCAACAATGCTGGA
GTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCTGGAACTGCATTTCGCGACAAAT
CACATTGGCCATTTTCTTCTAACGAACCTCTTGCTAGAAAACATGAAGAAGACATGTAGG
GACAGCGGTATCGAGGGACGGATTGTCAATTTGACATCTTCGGCGCATTCCATAACCTAT
CGTGAAGGGATATGTTTTGACAAAATTCATGATCCATCTAGTTTGAACGACTTTGTTGCT
TATGGGCAATCCAAGCTTGCCAATATTCTTCATTCTAATGAACTGTCTCGAATACTCAAG
GAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATGACTAACCTT
TTTAGGAACAGGACTATTGTCTCTGCTTTACTGAACTCCATTGGAAGAATCATATGTAGA
ACAGTTGAGCAGGGTGCTGCAACGACATGCTATGTTGCAATGCATCCTCAAGTGAGGGGG
ATAAGTGGAAAGTACTTCACCAATTGTGATGTAGCCAACCCGAGCTCACAAGCTTCAGAT
GCTGAGTTGGCCAAGAAGCTATGGCAATTTAGCTTGCAAATTGTGTCTTCTTGA

Peptide Sequence

PEP ID

Zm00001d029840_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:1:89587941:89589851:1 gene:Zm00001d029840 transcript:Zm00001d029840_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Short-chain dehydrogenase TIC 32 chloroplastic
Sequence

MAVRNVSAGLKAREAIVAKIPVARIDVLELDLSSIASVRRFASNFDSLNLPLSILINNAG
VMTRSCTRSCDGLELHFATNHIGHFLLTNLLLENMKKTCRDSGIEGRIVNLTSSAHSITY
REGICFDKIHDPSSLNDFVAYGQSKLANILHSNELSRILKEDGVNISANAVHPGVIMTNL
FRNRTIVSALLNSIGRIICRTVEQGAATTCYVAMHPQVRGISGKYFTNCDVANPSSQASD
AELAKKLWQFSLQIVSS

Transcript Sequence

Transcript ID

Zm00001d029840_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:89587941:89589851:1 gene:Zm00001d029840 gene_biotype:protein_coding transcript_biotype:protein_coding description:Short-chain dehydrogenase TIC 32 chloroplastic
Sequence

GAGATTTTCATTTGCAGCGAAGGAATGCCGGTGTTGAGCTGAGACTACGTACCTGCGCAG
CGCAGGTGCGTCGAGCGGCATCGGGCTGGAGACGGCGCGTGTCCTGGCGTTGCGCGGCGT
GCACGTCGTCATGGCCGTCCGCAACGTCTCCGCCGGGCTCAAGGCCAGGGAGGCCATCGT
GGCTAAGATCCCCGTCGCACGGATTGACGTTCTGGAGCTGGACCTCAGCTCCATAGCTTC
CGTAAGGAGATTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATTCTCATCAA
CAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCTGGAACTGCATTT
CGCGACAAATCACATTGGCCATTTTCTTCTAACGAACCTCTTGCTAGAAAACATGAAGAA
GACATGTAGGGACAGCGGTATCGAGGGACGGATTGTCAATTTGACATCTTCGGCGCATTC
CATAACCTATCGTGAAGGGATATGTTTTGACAAAATTCATGATCCATCTAGTTTGAACGA
CTTTGTTGCTTATGGGCAATCCAAGCTTGCCAATATTCTTCATTCTAATGAACTGTCTCG
AATACTCAAGGAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCAT
GACTAACCTTTTTAGGAACAGGACTATTGTCTCTGCTTTACTGAACTCCATTGGAAGAAT
CATATGTAGAACAGTTGAGCAGGGTGCTGCAACGACATGCTATGTTGCAATGCATCCTCA
AGTGAGGGGGATAAGTGGAAAGTACTTCACCAATTGTGATGTAGCCAACCCGAGCTCACA
AGCTTCAGATGCTGAGTTGGCCAAGAAGCTATGGCAATTTAGCTTGCAAATTGTGTCTTC
TTGATCTAGTGCTTATCTGAACAAGCGGTGCACAAATTGATGTGCTAAATTGCAGATGCT
TAGGCTCTCTTCAGAACAAATGGAAAACCATATGAATTTTTTAGATCAAAGGCATTCACC
CGGATTTATTAGAAAACCATAAGTATTTTGGATGACTACAATCCTGTAGGAAAATGTATG
CCCTTTTGGAAAAAATGATTGCTTCCTATGAGATTCCTTGTATTCCTATAATGATGCATG
AATTCATATTCCAAAGAAAATTTGGAGGCAAACAAAAATAAGGTTGGACCTTATAGAAAC
T