Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d029734_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:84452971:84455490:-1 gene:Zm00001d029734 gene_biotype:protein_coding transcript_biotype:protein_coding description:fringe-related protein
Sequence

ATGAGGGGAGGAGGAGCCGGAGAGAAGCTCCACCACAAGGAGGCCAATGCCGCGCACGGC
GCCGGCGCCGGCGCCGCGGGGAAGGGGGCCAAGGCTTGTTTCGTCAACGGCCTCCTCCTC
TACGTCGTCCTGCCGGTGCTGGTCTTGTACTTCGTCATCATCGCCGCCTCGCAGTTCTAC
AACCCTCGGTGCTCGCCGGAGGGCAAAGCCATGGCGACGCATTTCGTTGTGGCTAACAAG
CCCAACGCGTCGTTGAACGGATCGACTCCTCCACCAGCGACTCTGGCGTCGTCCAAGACG
AGGCCGACGGCAGAAGAAGCGCCCACCGGGCTGCGCCATATCGTGTTCGGCATCGGCGCG
TCGGCGTCGCTGTGGGAGAGCCGGAAGGAGTACATCAAGCTGTGGTGGCGGCCGGGGCGG
ATGCGCGGGTTCGTGTGGATGGACAAGCCCGTGGGGGAGTTCTACTCCAAGAGCTCCCGC
ACGGGGCTCCCGGCGATCATGGTGAGCTCGGACACGTCCAAGTTCCCCTACACCCACGGC
GCGGGCAGCCGGTCGGCGCTCCGGATCTCGCGCATCGTGTCCGAGACGTTCCGGCTGGGG
CTCCCCGGCGTGCGGTGGTTCGTGATGGGCGACGACGACACGGTGTTCCTGCCGGAGAAC
CTGGTGCACGTGCTGTCCCAGTACGACCACCGGCAGCCGTACTACATCGGGTCGCCGTCG
GAGAGCCACATCCAGAACCTGATCTTCTCGTACGGCATGGCGTTCGGCGGCGGCGGGTTC
GCCATCAGCCGCGCGCTGGCGGAGGAGCTGGCGAAGATGCAGGACGGGTGCCTGCACCGG
TACCCGGCGCTGTACGGCAGCGACGACCGCATCCACGCGTGCATGTCGGAGCTGGGCGTG
CCGCTGACGCGCCACCCGGGGTTCCACCAGTGCGACCTGTGGGGCGACGTGCTGGGCCTG
CTGGGCGCGCACCCCGTGGCGCCGCTGGTGACGCTGCACCACCTGGACTTCCTGGAGCCG
GTGTTCCCGGCGACGCCGTCGCGGGCCGGGGCGCTGCGCAGGCTGTTCGACGGGCCCGTG
CGGCTGGACTCGGCGGCGGTGGCGCAGCAGTCGGTGTGCTACGACCACGCGCGGCAGTGG
ACGGTGTCCGTGTCGTGGGGGTTCGCGGTGATGGTGGTGCGCGGGGTGCTGTCGCCGCGG
GAGATGGAGACGCCGATGCGCAGCTTCCTCAACTGGTACAAGCGCGCCGACTACACGGCC
TACTCGTTCAACACGCGGCCCGTGGCGCGGCAGCCGTGCCAGAAGCCGCACGTGTACTAC
ATGCGCGGGAGCCGGATGGACCGGCGCCGGAACCTGACCGTGACGGAGTACGAGCGGCAC
CGGGCGAAGCACCCCGGCTGCCGGTGGCGCATCGCCGACCCCGCCGCGCTGCTCGACAGC
ATCGTCGTGCTCAAGAAGCCCGACCCCGACCTCTGGAAGAGGTCGCCTAGGAGGAACTGC
TGCAGGGTGGTGTCGTCGCCGAAGCAGGGGAAGAACCGGTCGATGACCATCGACGTAGGT
GTTTGCAGTGAAGGCGAGTTCGCCAAGGTTTAA

Peptide Sequence

PEP ID

Zm00001d029734_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:84452971:84455490:-1 gene:Zm00001d029734 transcript:Zm00001d029734_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:fringe-related protein
Sequence

MRGGGAGEKLHHKEANAAHGAGAGAAGKGAKACFVNGLLLYVVLPVLVLYFVIIAASQFY
NPRCSPEGKAMATHFVVANKPNASLNGSTPPPATLASSKTRPTAEEAPTGLRHIVFGIGA
SASLWESRKEYIKLWWRPGRMRGFVWMDKPVGEFYSKSSRTGLPAIMVSSDTSKFPYTHG
AGSRSALRISRIVSETFRLGLPGVRWFVMGDDDTVFLPENLVHVLSQYDHRQPYYIGSPS
ESHIQNLIFSYGMAFGGGGFAISRALAEELAKMQDGCLHRYPALYGSDDRIHACMSELGV
PLTRHPGFHQCDLWGDVLGLLGAHPVAPLVTLHHLDFLEPVFPATPSRAGALRRLFDGPV
RLDSAAVAQQSVCYDHARQWTVSVSWGFAVMVVRGVLSPREMETPMRSFLNWYKRADYTA
YSFNTRPVARQPCQKPHVYYMRGSRMDRRRNLTVTEYERHRAKHPGCRWRIADPAALLDS
IVVLKKPDPDLWKRSPRRNCCRVVSSPKQGKNRSMTIDVGVCSEGEFAKV

Transcript Sequence

Transcript ID

Zm00001d029734_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:84452971:84455490:-1 gene:Zm00001d029734 gene_biotype:protein_coding transcript_biotype:protein_coding description:fringe-related protein
Sequence

CTGAATTACCATGCCCTTTTTTAGAAACTCGTCACCGTCCACCATTGCGATTTGCTAGCC
TCGGCGCGTCCAGACCGCGACGGCATTGGCATGAGGGGAGGAGGAGCCGGAGAGAAGCTC
CACCACAAGGAGGCCAATGCCGCGCACGGCGCCGGCGCCGGCGCCGCGGGGAAGGGGGCC
AAGGCTTGTTTCGTCAACGGCCTCCTCCTCTACGTCGTCCTGCCGGTGCTGGTCTTGTAC
TTCGTCATCATCGCCGCCTCGCAGTTCTACAACCCTCGGTGCTCGCCGGAGGGCAAAGCC
ATGGCGACGCATTTCGTTGTGGCTAACAAGCCCAACGCGTCGTTGAACGGATCGACTCCT
CCACCAGCGACTCTGGCGTCGTCCAAGACGAGGCCGACGGCAGAAGAAGCGCCCACCGGG
CTGCGCCATATCGTGTTCGGCATCGGCGCGTCGGCGTCGCTGTGGGAGAGCCGGAAGGAG
TACATCAAGCTGTGGTGGCGGCCGGGGCGGATGCGCGGGTTCGTGTGGATGGACAAGCCC
GTGGGGGAGTTCTACTCCAAGAGCTCCCGCACGGGGCTCCCGGCGATCATGGTGAGCTCG
GACACGTCCAAGTTCCCCTACACCCACGGCGCGGGCAGCCGGTCGGCGCTCCGGATCTCG
CGCATCGTGTCCGAGACGTTCCGGCTGGGGCTCCCCGGCGTGCGGTGGTTCGTGATGGGC
GACGACGACACGGTGTTCCTGCCGGAGAACCTGGTGCACGTGCTGTCCCAGTACGACCAC
CGGCAGCCGTACTACATCGGGTCGCCGTCGGAGAGCCACATCCAGAACCTGATCTTCTCG
TACGGCATGGCGTTCGGCGGCGGCGGGTTCGCCATCAGCCGCGCGCTGGCGGAGGAGCTG
GCGAAGATGCAGGACGGGTGCCTGCACCGGTACCCGGCGCTGTACGGCAGCGACGACCGC
ATCCACGCGTGCATGTCGGAGCTGGGCGTGCCGCTGACGCGCCACCCGGGGTTCCACCAG
TGCGACCTGTGGGGCGACGTGCTGGGCCTGCTGGGCGCGCACCCCGTGGCGCCGCTGGTG
ACGCTGCACCACCTGGACTTCCTGGAGCCGGTGTTCCCGGCGACGCCGTCGCGGGCCGGG
GCGCTGCGCAGGCTGTTCGACGGGCCCGTGCGGCTGGACTCGGCGGCGGTGGCGCAGCAG
TCGGTGTGCTACGACCACGCGCGGCAGTGGACGGTGTCCGTGTCGTGGGGGTTCGCGGTG
ATGGTGGTGCGCGGGGTGCTGTCGCCGCGGGAGATGGAGACGCCGATGCGCAGCTTCCTC
AACTGGTACAAGCGCGCCGACTACACGGCCTACTCGTTCAACACGCGGCCCGTGGCGCGG
CAGCCGTGCCAGAAGCCGCACGTGTACTACATGCGCGGGAGCCGGATGGACCGGCGCCGG
AACCTGACCGTGACGGAGTACGAGCGGCACCGGGCGAAGCACCCCGGCTGCCGGTGGCGC
ATCGCCGACCCCGCCGCGCTGCTCGACAGCATCGTCGTGCTCAAGAAGCCCGACCCCGAC
CTCTGGAAGAGGTCGCCTAGGAGGAACTGCTGCAGGGTGGTGTCGTCGCCGAAGCAGGGG
AAGAACCGGTCGATGACCATCGACGTAGGTGTTTGCAGTGAAGGCGAGTTCGCCAAGGTT
TAACTAATCCATAGGGGGACGGATTGTTTGATTGATTAGGAGAGGGAAAGAGGAATTGAC
GGCGGCAGAAGAGGTCCCGGAACAAACAGCAGGGAGAGCTAAAATAGGCTATTAGTCACT
AGTCACAGCGTATCCAGCAGCAGGTCGATCGTGTCTGAAACGCTCTCTGTCTCCGTGTAC
GTGTCGACGCATCTGGCGAGTGCGCCGTTTTGAGTTGACTGCAATCTGTAGTAACTTGGT
GCGTGGTTTAGTCTTAGTGTGCCGGATTGCTGGGATGGTTTGTGTTTAAGTAGCAACCAG
CTTGTGGAATGAAAACTCTATACGAAGCAGTTATATGGCGAATTCGATTTCATGTGCTGA
TGCAATGTGTTCGGTAACTCAATGGCGGCATCTTCAGTTTGGTGATTCGGTGGAGGCTCG
GGTCAAATTTAGTTCTAAATCCTCTTGGGATCTCTATCTTTCCCAGGCTGATCAATCTCA
AGGAGTATTATTTAAATAAGATATTTAGTTATTTATAGAATATTTAGTTATTATAGAATA
TTTTTTGTAAAATGGATTTGCCCCCTTCCCTCCAAACTATTCCTTAGAGATACTTTAGGA
GCCAGAAAACCGGAGTATGTTGAAGGGGCTAACATCCCCTTCTTATTTAAAGTTAAATAA
AAAAGATTTTAGTCTC