Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d029598_T013
CDS Infomation

cds chromosome:B73_RefGen_v4:1:78391087:78405511:-1 gene:Zm00001d029598 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription initiation factor TFIID subunit 4b
Sequence

ATGGATCCCATCATGAAGCTACTCGAGGACGACGAGGATGAGAGTCTGCACTCGGGTGCC
GACGTCGAGGCCTTCACGGCGGCGCTGAACCGCGAGGTGGAGGCCAGCGCGAGCGCCAGC
GCCAGCACCAGCACCAGCGTTCCCGCCGGCTCCTCGTCCCAGCCCACGGATCACGGTGCT
GGACTTTTACCTCAGGAACACAAGTCACTATTAAACCATGATCCTGGTCAGTGGCAAGAT
CCTGTAAAGAATGAAATTGTAAACCAGGAGAGTCAGCAACAGGAACAGACACATGCATTT
AGAAATGATCACCCGTCAAGACCTGAAATGGTTTCTCAAGGTTCTAATAACTGCCCCCTT
CCCACTAATACACCAAAAGAATGTGATTTACTGAAGGCAAAACAAGAACCTGGAAGTACA
TCTCAACAAGGTATTGTTGCTCAGCATCAGCCTATGCAGCAAATGAAGAGTGAACAAACA
CCAATTGTCAGTCAGCAGCAGTCGATGCAGCAAATGAAGAATCAACAAACACCAGTCACA
AACCAAACAAATAGTGCAACTACAACAGCAAAAGCTCCAGTTGTTACATTTCACATGTTA
ATTCCAATTTTGAGTCGCTACCTAGACAAAGCCAGGGACATAGAAGTGCAGTCCATTTTC
GCCAAGTTGCGGAAAAATGAAGTCAGCAAGGAATACTTCTTAAAAACTGTAAGGAATATT
GTTGGTGATAAATTGCTTAAGCAAGCTGCTTCACAATATCAAATGCAGGCACAACGAAGC
CCTCAGACAAACCCAAGCAACTATTCTTTATCAGGTCAAGTTTCTGGTCAGCAGACTGCT
CCCAGTGGTTCTGTGACAGGAGATGAACAGAAGGGATATCCAGGGGCTCACACCATCCCT
ATGAGACAAGCTATTGCCAGCACTCGACCACCTCAATTTCGGCCTTCCTCGTCTGGCCAA
ATGCGGAGTAATACGGGTTATCCACCTTCACAAACCAATTTGCATAAGGCTAATGAAATG
GGAAACATGTCAGATGGGAAAGGGGTCCATATGTTACAAACTCGTCCACCCAATAACTCC
ATACCAGTACAAACAATGCAGCATCATGTGCAGCGACCACAAACATCTTCACCAGTGTTT
GGGGCAAATAGTATTCATGCACGTCCATTTCCGCGGCCACTTGGAGGTCCAGCTGCACCA
TTTAGACCACAAATGGCAGATTCCAATCCAAAAGCACAATTGATTCAGGGAGCTGTGACC
ACAGTATCTGGGAGTGTGCCAACACGATCCATAGTGTCTGGAAATGCGCCAGTCAATCAA
GCCTTGGGATCTTCAAAAGTCAGTGCTGGCATGGAAAGCCAGTCACAACAATTGAGTGCG
CCTAAGCCTTTAGCTGCAACAAGCTTAAGTCAGACTCAATCTCATGGCATTCAAGAAGAG
CCTAAAATTCAGATCCAATCTTCTGTGCAAGCACCTCCTGCAGCAGCTTCTAAAACACCT
CAGAGGAAGGCATCTTCTGGACAGAAGAAGCCTTTGGAAGTCTTAGGCTCATCCCCTCCA
CCATCTAGCAAAAAGCAGAAGGTATCTGGGGGTTTCCATGAACAAAGCATTGACCAGCTT
AATGATGTCACTGCAGTTAGCGGTGTTAATCTGAGGGAAGAAGAGGAACACCTTTTCTCT
GCTCCAAAGGAAGAGGGTCGAGTTTCAGAAGTTGCTCGGAAAGTTGTTCAACTAGAAGAA
GAAAAGCTCATTCTGCAGAAGGGACCTCTGACCCAAAAATTAGCGGGAATCATGAGTAAA
TGTAATTTGAAGGTCATTGGCACTGATGTGGAACGCTGTCTGTCCATGTGTGTTGAGGAG
AGGTTACGGGGGTTTATAAGAAGTATAATAAGGTTCTCTAAACAGAGGGTTGAGGTTGAA
AAGTCAAGACATCATTTTTATCCATTATCCTCAGATGTTCGCAGTCATATTATGAGAGTG
AATCGAGAAGCAAGAGAACAGTGGGAGAAAAAGCAGGCTGAAGATGCTGAGAGAATTAGG
AAACAAAATGATGGAGATGGCAATGCAAATGTTGATCTTGAAAAAGACAGAATCGAGACC
CGTGGTTTGTCAAAGCATGCAAAGACTTACAAGGAGGACGATGATAAGATGCGAACTACA
GCTGCAAATGTTGCTGCACGAGTTGCAGCGGGGGGAGATGACATGCTGTCAAAGTGGCAA
TTACTAGCTGAACGGAATAAGCAGAGAAGTGAGGGAGGTGATGGTTCTTCTGGCTCTGTA
CCAGGTAACATGTTGCAACACAGGCCATCACTGAAATCTGGGAAAGACTTAAGGGAAGAA
CATGAAGTTGAAAAGAGAGGATACTCCACAATGCTTGGATCTGGTGGTGTTAGAAGGTCA
CCGCTAACAAAAGTGGCGCGGAGTATTTCTATGAAGGATGTGGTAGCGGCACTCGAGCGA
GAGCCTCAGATGTCAAAATCCTCATTACTTTTCCGCCTATATGGAAGGCCATTGACAGAA
CCATCTGCAAAGTAA

Peptide Sequence

PEP ID

Zm00001d029598_P013
PEP Infomation

pep chromosome:B73_RefGen_v4:1:78391087:78405511:-1 gene:Zm00001d029598 transcript:Zm00001d029598_T013 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription initiation factor TFIID subunit 4b
Sequence

MDPIMKLLEDDEDESLHSGADVEAFTAALNREVEASASASASTSTSVPAGSSSQPTDHGA
GLLPQEHKSLLNHDPGQWQDPVKNEIVNQESQQQEQTHAFRNDHPSRPEMVSQGSNNCPL
PTNTPKECDLLKAKQEPGSTSQQGIVAQHQPMQQMKSEQTPIVSQQQSMQQMKNQQTPVT
NQTNSATTTAKAPVVTFHMLIPILSRYLDKARDIEVQSIFAKLRKNEVSKEYFLKTVRNI
VGDKLLKQAASQYQMQAQRSPQTNPSNYSLSGQVSGQQTAPSGSVTGDEQKGYPGAHTIP
MRQAIASTRPPQFRPSSSGQMRSNTGYPPSQTNLHKANEMGNMSDGKGVHMLQTRPPNNS
IPVQTMQHHVQRPQTSSPVFGANSIHARPFPRPLGGPAAPFRPQMADSNPKAQLIQGAVT
TVSGSVPTRSIVSGNAPVNQALGSSKVSAGMESQSQQLSAPKPLAATSLSQTQSHGIQEE
PKIQIQSSVQAPPAAASKTPQRKASSGQKKPLEVLGSSPPPSSKKQKVSGGFHEQSIDQL
NDVTAVSGVNLREEEEHLFSAPKEEGRVSEVARKVVQLEEEKLILQKGPLTQKLAGIMSK
CNLKVIGTDVERCLSMCVEERLRGFIRSIIRFSKQRVEVEKSRHHFYPLSSDVRSHIMRV
NREAREQWEKKQAEDAERIRKQNDGDGNANVDLEKDRIETRGLSKHAKTYKEDDDKMRTT
AANVAARVAAGGDDMLSKWQLLAERNKQRSEGGDGSSGSVPGNMLQHRPSLKSGKDLREE
HEVEKRGYSTMLGSGGVRRSPLTKVARSISMKDVVAALEREPQMSKSSLLFRLYGRPLTE
PSAK

Transcript Sequence

Transcript ID

Zm00001d029598_T013
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:78391087:78405511:-1 gene:Zm00001d029598 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription initiation factor TFIID subunit 4b
Sequence

GGAGGCGCCATGGGAAAAAGTAGCCGGCCTTCTTCCTCCGGCTCCCTTCCTTCCTGCCCG
CACAAGGGATTTCGTTTTGTTTCGTTTCATTTCATTTCGTTTCCTCCCGTTCGTCGAAGC
CCCGGCGGAGAGGCGAGGTGAGCTTTCTCGGAGAGGGGACCTCGCGCCACCAGCCGCCCG
AGCTTCCCGCGCCATGGATCCCATCATGAAGCTACTCGAGGACGACGAGGATGAGAGTCT
GCACTCGGGTGCCGACGTCGAGGCCTTCACGGCGGCGCTGAACCGCGAGGTGGAGGCCAG
CGCGAGCGCCAGCGCCAGCACCAGCACCAGCGTTCCCGCCGGCTCCTCGTCCCAGCCCAC
GGATCACGGTGCTGGACTTTTACCTCAGGAACACAAGTCACTATTAAACCATGATCCTGG
TCAGTGGCAAGATCCTGTAAAGAATGAAATTGTAAACCAGGAGAGTCAGCAACAGGAACA
GACACATGCATTTAGAAATGATCACCCGTCAAGACCTGAAATGGTTTCTCAAGGTTCTAA
TAACTGCCCCCTTCCCACTAATACACCAAAAGAATGTGATTTACTGAAGGCAAAACAAGA
ACCTGGAAGTACATCTCAACAAGGTATTGTTGCTCAGCATCAGCCTATGCAGCAAATGAA
GAGTGAACAAACACCAATTGTCAGTCAGCAGCAGTCGATGCAGCAAATGAAGAATCAACA
AACACCAGTCACAAACCAAACAAATAGTGCAACTACAACAGCAAAAGCTCCAGTTGTTAC
ATTTCACATGTTAATTCCAATTTTGAGTCGCTACCTAGACAAAGCCAGGGACATAGAAGT
GCAGTCCATTTTCGCCAAGTTGCGGAAAAATGAAGTCAGCAAGGAATACTTCTTAAAAAC
TGTAAGGAATATTGTTGGTGATAAATTGCTTAAGCAAGCTGCTTCACAATATCAAATGCA
GGCACAACGAAGCCCTCAGACAAACCCAAGCAACTATTCTTTATCAGGTCAAGTTTCTGG
TCAGCAGACTGCTCCCAGTGGTTCTGTGACAGGAGATGAACAGAAGGGATATCCAGGGGC
TCACACCATCCCTATGAGACAAGCTATTGCCAGCACTCGACCACCTCAATTTCGGCCTTC
CTCGTCTGGCCAAATGCGGAGTAATACGGGTTATCCACCTTCACAAACCAATTTGCATAA
GGCTAATGAAATGGGAAACATGTCAGATGGGAAAGGGGTCCATATGTTACAAACTCGTCC
ACCCAATAACTCCATACCAGTACAAACAATGCAGCATCATGTGCAGCGACCACAAACATC
TTCACCAGTGTTTGGGGCAAATAGTATTCATGCACGTCCATTTCCGCGGCCACTTGGAGG
TCCAGCTGCACCATTTAGACCACAAATGGCAGATTCCAATCCAAAAGCACAATTGATTCA
GGGAGCTGTGACCACAGTATCTGGGAGTGTGCCAACACGATCCATAGTGTCTGGAAATGC
GCCAGTCAATCAAGCCTTGGGATCTTCAAAAGTCAGTGCTGGCATGGAAAGCCAGTCACA
ACAATTGAGTGCGCCTAAGCCTTTAGCTGCAACAAGCTTAAGTCAGACTCAATCTCATGG
CATTCAAGAAGAGCCTAAAATTCAGATCCAATCTTCTGTGCAAGCACCTCCTGCAGCAGC
TTCTAAAACACCTCAGAGGAAGGCATCTTCTGGACAGAAGAAGCCTTTGGAAGTCTTAGG
CTCATCCCCTCCACCATCTAGCAAAAAGCAGAAGGTATCTGGGGGTTTCCATGAACAAAG
CATTGACCAGCTTAATGATGTCACTGCAGTTAGCGGTGTTAATCTGAGGGAAGAAGAGGA
ACACCTTTTCTCTGCTCCAAAGGAAGAGGGTCGAGTTTCAGAAGTTGCTCGGAAAGTTGT
TCAACTAGAAGAAGAAAAGCTCATTCTGCAGAAGGGACCTCTGACCCAAAAATTAGCGGG
AATCATGAGTAAATGTAATTTGAAGGTCATTGGCACTGATGTGGAACGCTGTCTGTCCAT
GTGTGTTGAGGAGAGGTTACGGGGGTTTATAAGAAGTATAATAAGGTTCTCTAAACAGAG
GGTTGAGGTTGAAAAGTCAAGACATCATTTTTATCCATTATCCTCAGATGTTCGCAGTCA
TATTATGAGAGTGAATCGAGAAGCAAGAGAACAGTGGGAGAAAAAGCAGGCTGAAGATGC
TGAGAGAATTAGGAAACAAAATGATGGAGATGGCAATGCAAATGTTGATCTTGAAAAAGA
CAGAATCGAGACCCGTGGTTTGTCAAAGCATGCAAAGACTTACAAGGAGGACGATGATAA
GATGCGAACTACAGCTGCAAATGTTGCTGCACGAGTTGCAGCGGGGGGAGATGACATGCT
GTCAAAGTGGCAATTACTAGCTGAACGGAATAAGCAGAGAAGTGAGGGAGGTGATGGTTC
TTCTGGCTCTGTACCAGGTAACATGTTGCAACACAGGCCATCACTGAAATCTGGGAAAGA
CTTAAGGGAAGAACATGAAGTTGAAAAGAGAGGATACTCCACAATGCTTGGATCTGGTGG
TGTTAGAAGGTCACCGCTAACAAAAGTGGCGCGGAGTATTTCTATGAAGGATGTGGTAGC
GGCACTCGAGCGAGAGCCTCAGATGTCAAAATCCTCATTACTTTTCCGCCTATATGGAAG
GCCATTGACAGAACCATCTGCAAAGTAATTTGGAGGATAATCATTGCAGTTCATATTACA
GAGGGGCAACTTTTGGTCAATATATGAGGAGGCCCAATCACCAAGCGATGGGGCTGATTG
GTCGACGATCAATTTTGCGGGGATTTAGCGATTACTTGGAAGCCAGCGTTTCCCTGGAGC
CATTTTTGTTTTTTCAAGGGAACAGTCTGCAGATGTTTCTTTTTTTTCAATGTTTTTTTC
TCTATATAATCATGTGTTGATCACAATGCCCAGCCAGCTTCAGCTGGTATGAACATCGTG
ATCGTTTTTGTATAGCAGATGGAGTAGGATGTTCCTTGAGATGCTTATGACTTGCTAAGT
GTCCTATTCTTTAATCGTGCGATTTTGTTGTACAGAAAACATGAAATGTATGTATTGGAG
GCTCAAATTTATTC