Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d029571_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:1:76848049:76858595:1 gene:Zm00001d029571 gene_biotype:protein_coding transcript_biotype:protein_coding description:zinc finger (C3HC4-type RING finger) family protein
Sequence

ATGACATCGCCTGGCGGCGTCTTCTCCGCCGCGCTCGTCGCCGAGGACTTCCCTTGGGTG
GACATGGAGGAGGAGATGGGGATGGCCCCGGACATGTACCGCGAGGTGTTCGACCTCGCG
CAGCGCGGGACACGAGCCTTTCGCGACCGCCTCTTCGACGAGGCAATATCCTGTTACACT
AAAGCTCAAAATTTGAGACCAGATCCAATTATCCTTGGCAATCGAAGTTTGACTTTCTGC
CGGTTAAGTCAACTGTTGAGGGAGAGATCAGCAGCTGACTCTGAATATCAGCCCTTGAAT
GGCCTTGATCCTACAACTCATGCAGAGTTAGCTCTGAAGGATGCAGAGAAGATATTATCT
ATCAACAGTAATTCTCCTAGACCATATATTCTCAAGGCATATGCGCTATTTCTGATGGAG
CATTACCATGAGGCACGTGAGACCCTTCTTGCTGGTCTTCAAGTTGATCCCCTCAGTCAT
GTCTTGCAAACCTGTCTGAATGATCTGGATAGGAATACAAATATTGCAGCTGGGGCAAGG
CGTGCAAGGTTAGCTAGGATTGATGATTTTGAGTGCACATTATGCTTTAAGCTATTGTAT
GAACCTGTCACTACACCATGTGGCCATTCATTTTGTCGCTCTTGTCTACATCAGTCAATG
GATCATGGTAATAAGTGCCCCATGTGTCGGACAGTATTATTTATCGGTCCAAGAACATGC
CCTATAAGTGTAACATTAAGCAACATAATTCAGAGAAATTTCCCAGAAGAATATGCTGAG
AGGAGGTCAGAACATGAGACTATGACATATGCTGGTGTTGATTTGATGCCTCTCTTTGTC
ATGGATGTTGTACTTCCATCCCAAAAGATGGCACTGAACATATTTGAACCTCGCTACAGA
CTGATGGTAAAGTTATTACAAAATTATATACACTTTTATCAGACACGTTTGTTGATAATA
TTCTTGGATCCTACGGACAAAGCGCCTATTGGCATCATCAAAAGAGCCATCGAACTGAAA
GATTGTATCCTCATTCTTCTCATTGAACAATTTATCAAAATACTCTCGCTATCTATGTTT
GATCTCATCTTTCTTCACCAAGAGGTACGGAGAATAATGGAAGGGAACCATCGGATGGGA
ATGGTTGCTATTGATTCGGCAACGGGTACTGTAGCAGATTGTGGCTGTGAGGTGGAAATT
TCAGAGTGTGAACCACTTCCAGATGGGCGCTTTTATTTAGAGGTGGAAGGCACACGTCGG
TTTCGTATCGTGCGATCATGGGATCAAGATGGATATAGAGTTGCTGAAGTTGAATGGTTG
AAAGATATACCTCTGCCAGAAGGTTCACAAGGGAGAAGAGAAGTAAAATCTTCATACCTT
TCTCATGCCTTTCTTTAA

Peptide Sequence

PEP ID

Zm00001d029571_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:1:76848049:76858595:1 gene:Zm00001d029571 transcript:Zm00001d029571_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:zinc finger (C3HC4-type RING finger) family protein
Sequence

MTSPGGVFSAALVAEDFPWVDMEEEMGMAPDMYREVFDLAQRGTRAFRDRLFDEAISCYT
KAQNLRPDPIILGNRSLTFCRLSQLLRERSAADSEYQPLNGLDPTTHAELALKDAEKILS
INSNSPRPYILKAYALFLMEHYHEARETLLAGLQVDPLSHVLQTCLNDLDRNTNIAAGAR
RARLARIDDFECTLCFKLLYEPVTTPCGHSFCRSCLHQSMDHGNKCPMCRTVLFIGPRTC
PISVTLSNIIQRNFPEEYAERRSEHETMTYAGVDLMPLFVMDVVLPSQKMALNIFEPRYR
LMVKLLQNYIHFYQTRLLIIFLDPTDKAPIGIIKRAIELKDCILILLIEQFIKILSLSMF
DLIFLHQEVRRIMEGNHRMGMVAIDSATGTVADCGCEVEISECEPLPDGRFYLEVEGTRR
FRIVRSWDQDGYRVAEVEWLKDIPLPEGSQGRREVKSSYLSHAFL

Transcript Sequence

Transcript ID

Zm00001d029571_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:76848049:76858595:1 gene:Zm00001d029571 gene_biotype:protein_coding transcript_biotype:protein_coding description:zinc finger (C3HC4-type RING finger) family protein
Sequence

CTCATCCTAGACTAGACTAGTCGTCGACTCGTCGTCTCGGAATAGGGTAGGCGAGGCGAC
CCGAATCCGCGTGGGGACACGTTTGCGCGGCTGCAGCCGCGCAATAACTACTGGGCACCG
GCGCACGAACGCCGCGTGCTCCCCGACCACCAGCTCCAATTCCCTCCCTCCAAAGCCCCC
CCCCCCAATCCCTTCACACTGTTCTGCCCAACACCCAATTGAAGCCGTCCCAATCCCAAC
CCTACTCCCTTGCCTCCCCCTAATGACATCGCCTGGCGGCGTCTTCTCCGCCGCGCTCGT
CGCCGAGGACTTCCCTTGGGTGGACATGGAGGAGGAGATGGGGATGGCCCCGGACATGTA
CCGCGAGGTGTTCGACCTCGCGCAGCGCGGGACACGAGCCTTTCGCGACCGCCTCTTCGA
CGAGGCAATATCCTGTTACACTAAAGCTCAAAATTTGAGACCAGATCCAATTATCCTTGG
CAATCGAAGTTTGACTTTCTGCCGGTTAAGTCAACTGTTGAGGGAGAGATCAGCAGCTGA
CTCTGAATATCAGCCCTTGAATGGCCTTGATCCTACAACTCATGCAGAGTTAGCTCTGAA
GGATGCAGAGAAGATATTATCTATCAACAGTAATTCTCCTAGACCATATATTCTCAAGGC
ATATGCGCTATTTCTGATGGAGCATTACCATGAGGCACGTGAGACCCTTCTTGCTGGTCT
TCAAGTTGATCCCCTCAGTCATGTCTTGCAAACCTGTCTGAATGATCTGGATAGGAATAC
AAATATTGCAGCTGGGGCAAGGCGTGCAAGGTTAGCTAGGATTGATGATTTTGAGTGCAC
ATTATGCTTTAAGCTATTGTATGAACCTGTCACTACACCATGTGGCCATTCATTTTGTCG
CTCTTGTCTACATCAGTCAATGGATCATGGTAATAAGTGCCCCATGTGTCGGACAGTATT
ATTTATCGGTCCAAGAACATGCCCTATAAGTGTAACATTAAGCAACATAATTCAGAGAAA
TTTCCCAGAAGAATATGCTGAGAGGAGGTCAGAACATGAGACTATGACATATGCTGGTGT
TGATTTGATGCCTCTCTTTGTCATGGATGTTGTACTTCCATCCCAAAAGATGGCACTGAA
CATATTTGAACCTCGCTACAGACTGATGGTAAAGTTATTACAAAATTATATACACTTTTA
TCAGACACGTTTGTTGATAATATTCTTGGATCCTACGGACAAAGCGCCTATTGGCATCAT
CAAAAGAGCCATCGAACTGAAAGATTGTATCCTCATTCTTCTCATTGAACAATTTATCAA
AATACTCTCGCTATCTATGTTTGATCTCATCTTTCTTCACCAAGAGGTACGGAGAATAAT
GGAAGGGAACCATCGGATGGGAATGGTTGCTATTGATTCGGCAACGGGTACTGTAGCAGA
TTGTGGCTGTGAGGTGGAAATTTCAGAGTGTGAACCACTTCCAGATGGGCGCTTTTATTT
AGAGGTGGAAGGCACACGTCGGTTTCGTATCGTGCGATCATGGGATCAAGATGGATATAG
AGTTGCTGAAGTTGAATGGTTGAAAGATATACCTCTGCCAGAAGGTTCACAAGGGAGAAG
AGAAGTAAAATCTTCATACCTTTCTCATGCCTTTCTTTAACTCAATAATTGTGTCCAAAT
GCAACCAATGTTTTTATCAGTATATCCTGTTATTTTTCCCTAACAAATACATCTCACATT
GGCTACATACTTTCAAAACCACATTGAGATTCAGTTAGACTACTGTCAAATTGAAAACCT
AACGTGTTAGTGTAACTTCCGAAACTGGGTGAGATGTGTTAGAGTACCTATTAGGGTTTC
GGTACTCCCCATGTATATTTACTGTTTTGCCCCCATTGTAACAGGCTCGGCCCATCTAAC
TCAGGCTATATATCCATCTCCCAACCCTTTGTTAGGGTTAGGGTTTTCATCAGTCAACAT
GGTATCAAAGCCAATTTAGTTTTTCCCTCCCTCCCGGCCACCCACCAACGCTCCTCTCGC
TCCCCACCGGGTTTTTTCCACCGACAACCCCGTGTGGACGGAGGCTGCCCCATCCCCGCT
GGCCACTGCACCTGCGCCTGCCACTCTCGTCGCCGCCAG