Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d029243_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:63574227:63576200:1 gene:Zm00001d029243 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cytochrome P450 84A1
Sequence

ATGGAGCTACCAGCACCGTCCTCCGCATCCTTCTTCCTCGTCGCCGTAGTGGCTGGCGCC
ACTCTCTTCCTCGTAACCGTTCTCCGGCTCCGCGCGCGCTCGACGCGCAAGTACAGGCTC
CCACCAGGCCCGCGGCCGTGGCCGGTGATCGGCAACCTGAACCTGATCGGCCCGCTGCCT
CACCACTCCGTCCACGAGCTCTCCAAGAGGTACGGCCCGCTCATGTCCCTGCGGTTCGGC
TCCTTTCCCGTCGTCGTCGCGTCGTCGATCGACACGGCGAGGCTCATCCTCAAGACCCAC
GACCTGGCCTTCATCGACCGTCCTCAGACGGCGGCCGGCAGGTACACCACCTACAACTGC
GCTGGCCTCTTCTACCAGCCCTACGGCGCGTACTGGCGTCAGGCGCGCAGGCTTTGCCAG
GCCGAGCTCTTCAGCGCGAGGCGGCTCATGTCGCTCGAGCACGTCCGCAGCGACGAGGTG
CGCGCCATGCTGAGCGACCTGCGTGCGGCGGCGTCGGCGCCGGCCGGCGGCCACGACGCG
GTGACGCTCAGGGAGCACCTCTACATGGTGAACCTCAGCGTCGTCTCGCGCATGCTGCTG
GGCAAGAAGTACGTCGTCGAGGGGTCTAGCTCGCCGGCGACGCCCGAGGAGTTCAGGTGG
CTGATCGACGAGCACTTCTTTCTCAACGGCGTGCTCAACGTCGCGGACATGATCCCGTGG
CTCAGCCCCCTGGACCCGCAAGGGTACGTCAAGAGGATGAAGAGGTCGGCCAAGATGCTG
GACCGGTTCCTGGAGCACGTGGTGGACGAGCACAACGAGCGGCGGCGCCGAGAAGGAGAG
GATTTCGTCGCCATGGACATGATGGACGTGCTCTTGGAGCTCGCTGACGACCCCAGCCAG
CTCGAGGTCCCCATCACGCGGGATAATGTGAAGGGGTTCACTCTAGACCTGATGGGCGGC
GGCACCGACACCTCGGCGGTGACTGTGGAGTGGGCCATGTCAGAGCTCCTGAGGAACCCA
GAGGTCCTCGCCAAGGCCACCGAGGAGCTGGACCGTGTCGTCGGCCGCAACCGTCTTGTG
GCAGAGGGGGACATCCCAAGCCTCCCGTACCTCGACGCCGTCGTGAAGGAGACCTTGCGC
CTGCACCCAGTCGCGCCGCTCCTGACTCCGCGGCTGTGTCGGGAGGACGTGTCCGTGGGC
GGCTACGACATCCCGGCGGGCGCGCGCGTCTTCGTCAACGCCTGGGCCATCGGCCGTGAC
CCGGCGGTGTGGGAAGCTCCCCTGGAGTTCCGGCCGGAGCGGTTCGCCGGAAGCGGCGTG
GACGTCAAAGGGCAGCACTTCGAGCTGCTGCCGTTCGGGTCCGGCCGCCGCATGTGCCCC
GGCATGGGCCTCGCCCTCAGGATGGTGCCTACGATCCTGGGCAACCTGCTGCACGCCTTC
GCTTGGCGGCTCCCCGACGGCGTGGCGGCCGAGGAGCTGGGCATGGAAGAAACGTTCGGG
CTCACCGTGCCGCGCTTGGTTCCGCTCCAGGCCGTCGCTGAGCCCAAGCTTCCTGCTCGC
CTGTATGCTGTCCTGTGA

Peptide Sequence

PEP ID

Zm00001d029243_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:63574227:63576200:1 gene:Zm00001d029243 transcript:Zm00001d029243_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cytochrome P450 84A1
Sequence

MELPAPSSASFFLVAVVAGATLFLVTVLRLRARSTRKYRLPPGPRPWPVIGNLNLIGPLP
HHSVHELSKRYGPLMSLRFGSFPVVVASSIDTARLILKTHDLAFIDRPQTAAGRYTTYNC
AGLFYQPYGAYWRQARRLCQAELFSARRLMSLEHVRSDEVRAMLSDLRAAASAPAGGHDA
VTLREHLYMVNLSVVSRMLLGKKYVVEGSSSPATPEEFRWLIDEHFFLNGVLNVADMIPW
LSPLDPQGYVKRMKRSAKMLDRFLEHVVDEHNERRRREGEDFVAMDMMDVLLELADDPSQ
LEVPITRDNVKGFTLDLMGGGTDTSAVTVEWAMSELLRNPEVLAKATEELDRVVGRNRLV
AEGDIPSLPYLDAVVKETLRLHPVAPLLTPRLCREDVSVGGYDIPAGARVFVNAWAIGRD
PAVWEAPLEFRPERFAGSGVDVKGQHFELLPFGSGRRMCPGMGLALRMVPTILGNLLHAF
AWRLPDGVAAEELGMEETFGLTVPRLVPLQAVAEPKLPARLYAVL

Transcript Sequence

Transcript ID

Zm00001d029243_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:63574227:63576200:1 gene:Zm00001d029243 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cytochrome P450 84A1
Sequence

AAAAAAGGGCTCGTCGCACACCCCTACTGGTACGTCCCAACTCCCAAGTCCCCATGGAGC
TACCAGCACCGTCCTCCGCATCCTTCTTCCTCGTCGCCGTAGTGGCTGGCGCCACTCTCT
TCCTCGTAACCGTTCTCCGGCTCCGCGCGCGCTCGACGCGCAAGTACAGGCTCCCACCAG
GCCCGCGGCCGTGGCCGGTGATCGGCAACCTGAACCTGATCGGCCCGCTGCCTCACCACT
CCGTCCACGAGCTCTCCAAGAGGTACGGCCCGCTCATGTCCCTGCGGTTCGGCTCCTTTC
CCGTCGTCGTCGCGTCGTCGATCGACACGGCGAGGCTCATCCTCAAGACCCACGACCTGG
CCTTCATCGACCGTCCTCAGACGGCGGCCGGCAGGTACACCACCTACAACTGCGCTGGCC
TCTTCTACCAGCCCTACGGCGCGTACTGGCGTCAGGCGCGCAGGCTTTGCCAGGCCGAGC
TCTTCAGCGCGAGGCGGCTCATGTCGCTCGAGCACGTCCGCAGCGACGAGGTGCGCGCCA
TGCTGAGCGACCTGCGTGCGGCGGCGTCGGCGCCGGCCGGCGGCCACGACGCGGTGACGC
TCAGGGAGCACCTCTACATGGTGAACCTCAGCGTCGTCTCGCGCATGCTGCTGGGCAAGA
AGTACGTCGTCGAGGGGTCTAGCTCGCCGGCGACGCCCGAGGAGTTCAGGTGGCTGATCG
ACGAGCACTTCTTTCTCAACGGCGTGCTCAACGTCGCGGACATGATCCCGTGGCTCAGCC
CCCTGGACCCGCAAGGGTACGTCAAGAGGATGAAGAGGTCGGCCAAGATGCTGGACCGGT
TCCTGGAGCACGTGGTGGACGAGCACAACGAGCGGCGGCGCCGAGAAGGAGAGGATTTCG
TCGCCATGGACATGATGGACGTGCTCTTGGAGCTCGCTGACGACCCCAGCCAGCTCGAGG
TCCCCATCACGCGGGATAATGTGAAGGGGTTCACTCTAGACCTGATGGGCGGCGGCACCG
ACACCTCGGCGGTGACTGTGGAGTGGGCCATGTCAGAGCTCCTGAGGAACCCAGAGGTCC
TCGCCAAGGCCACCGAGGAGCTGGACCGTGTCGTCGGCCGCAACCGTCTTGTGGCAGAGG
GGGACATCCCAAGCCTCCCGTACCTCGACGCCGTCGTGAAGGAGACCTTGCGCCTGCACC
CAGTCGCGCCGCTCCTGACTCCGCGGCTGTGTCGGGAGGACGTGTCCGTGGGCGGCTACG
ACATCCCGGCGGGCGCGCGCGTCTTCGTCAACGCCTGGGCCATCGGCCGTGACCCGGCGG
TGTGGGAAGCTCCCCTGGAGTTCCGGCCGGAGCGGTTCGCCGGAAGCGGCGTGGACGTCA
AAGGGCAGCACTTCGAGCTGCTGCCGTTCGGGTCCGGCCGCCGCATGTGCCCCGGCATGG
GCCTCGCCCTCAGGATGGTGCCTACGATCCTGGGCAACCTGCTGCACGCCTTCGCTTGGC
GGCTCCCCGACGGCGTGGCGGCCGAGGAGCTGGGCATGGAAGAAACGTTCGGGCTCACCG
TGCCGCGCTTGGTTCCGCTCCAGGCCGTCGCTGAGCCCAAGCTTCCTGCTCGCCTGTATG
CTGTCCTGTGATGCATGCAAGCCTATCTTGCTCTGCCTAATATTTTTCTCTTAGTAATTA
AGTGGTTTAGTCGTTTAGAACATCGTATCCTGGGTCTTTATATCATCTGAATAAAGCATT
GCACGTGAAAGCTAGCAGAGATATCACAAGACTATCACCGAGATTCGAAGGCTTGGAATT
TTTGTTTGGAAAATCTCGGTATACTTCAATTGAACTCTCAATCATTAGACCA