Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d029139_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:1:60187028:60190201:-1 gene:Zm00001d029139 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha-humulene/(-)-(E)-beta-caryophyllene synthase
Sequence	ATGGCATCTCACAATGCTAGTGTTAGTGTCCCAGAGATGGCGTCGGGTTTCCATCCGACT GTATGGGGTGACTTCTTCATCGACTACAGTCCACAGCCATCGCAGGCATGCATGCCCTAT ACTACAAAGTCGGAGGAGTGGACAGCAGAGAGGATGAGCCAGCTAAAGGAGAAAATAGCT GGGCTATTCGGAGCCTGCACGACGACAGCCGAGCAACTCAACCTAGTGGACACGCTCCAG CATCTAAGCATAGACCACCATTTCAGCACCCAGATCCTCTCCGTCCTCACTAGCGCCCAC GCCGCGGAAGAACTCAACAGCGGCGGCGCCTGTCTCCACGACGTCGCCCTTCGGTTCCGC CTGCTGCGGCAGCAAGGGTTCTGGGTGTCTCCAGAGGTATTCGACCGGTTCAGAGACGAA AACGGGAGCTTTGACGTCGGCGTGGCAGACGACGACGCGAGGGGGCTGCTGAGCCTATAC AACGCGGCTTACCTTCTCACCCATGGAGAGGCAGAGCTCGAGGAGGCTGCATTGTTCGCC AGGCAGCGTCTTGAGTCCATGTCCATGAGAGGTAGCCTTGAGTACCCGCTGGCCCAGCAG GTGAGCCGAGCGCTCCACCTGCCACTGCCGCGGACGGTCAGAAGAGTCGAGACTCTGCAT TATGTCTCGGAGTACGGAGGAGACCCGACGCATGAGCATGAGCATGACCCCTCCGTTCTG GAGTTCGCCCGGCTGGATTTCGAGCTCTTGCAACGTCTCCACGTGAAGGAGCTCAAGGCT CTTTCTAGGTGGTGGAAAGATCTCTACAACGAAGCTGGAGTGACCTACTCGCGGGACCGC GTGGTGGAGTGCTACCTGTGGTCTTACACGGCGTACTACGAGGAAGAACACGCGAGGGCG AGGATGATCCTCGCTAAGATGATCGCGCTGATAATCTTGACGGACGACACCTACGACGTC CGCGCTACTCTGGAGGAGTGTCGAAGGTTCGATGAAGCTATACAGAGATGGGACGAGAGC GCTGTTTCTCTCCTGCCGGACTACCTGAAGAAGTTCTACCTCAAGCTGATGAACATCTTT GAGGAGTTTGAGGACGAGCTGGAACCACATGAGAAGTGCAGGGTCGCTTTTAGCAGAAAA GCGTTTCAAACATTATCGAGTAATTATCTCCAAGAAGCGGAATGGTTTCATGGCCGTTAC AAGCCAAGATTCGAAGATCAGGTAAAGGTATCCACTGTGTGCTCAGGCGCTCCATTCGCA GCTGTTGGGTTACTAGTTGGCATGGGAGGTGATGTAGCAACCCAGGAGGCACTTGAGTGG GCAATGGGTTGCACGGATGCTGTCAAGGCTTTCGCAGAGGTCACACGCTTCATGAATGAC CTTGCTTCGTATAAGCGTGGAAAGAACAAAAACGACGTGGACAGCTCGGTCGAATGCTAC ATCAGTGAGCATGGCGTCACAGCTGAGGTTGCCTTTGCACAGATAAGCTCCCTGATTGAA GATGCATGGAAAACTATAAACGGAGCACGCTTTGAGAACAGCAAACTACTTCCAGCAGTG CAGCGAGTTGCCGACATAACCGCCAGCATGCCGTTGATGTACGGTGACAACAAGGACGCG TTCACGTTCAGCGACGGTCTAAAGGGGCTCATCGAACGCCTGTTTCTCAACAGGCCATAA

Peptide Sequence

PEP ID	Zm00001d029139_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:1:60187028:60190201:-1 gene:Zm00001d029139 transcript:Zm00001d029139_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha-humulene/(-)-(E)-beta-caryophyllene synthase
Sequence	MASHNASVSVPEMASGFHPTVWGDFFIDYSPQPSQACMPYTTKSEEWTAERMSQLKEKIA GLFGACTTTAEQLNLVDTLQHLSIDHHFSTQILSVLTSAHAAEELNSGGACLHDVALRFR LLRQQGFWVSPEVFDRFRDENGSFDVGVADDDARGLLSLYNAAYLLTHGEAELEEAALFA RQRLESMSMRGSLEYPLAQQVSRALHLPLPRTVRRVETLHYVSEYGGDPTHEHEHDPSVL EFARLDFELLQRLHVKELKALSRWWKDLYNEAGVTYSRDRVVECYLWSYTAYYEEEHARA RMILAKMIALIILTDDTYDVRATLEECRRFDEAIQRWDESAVSLLPDYLKKFYLKLMNIF EEFEDELEPHEKCRVAFSRKAFQTLSSNYLQEAEWFHGRYKPRFEDQVKVSTVCSGAPFA AVGLLVGMGGDVATQEALEWAMGCTDAVKAFAEVTRFMNDLASYKRGKNKNDVDSSVECY ISEHGVTAEVAFAQISSLIEDAWKTINGARFENSKLLPAVQRVADITASMPLMYGDNKDA FTFSDGLKGLIERLFLNRP

Transcript Sequence

Transcript ID	Zm00001d029139_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:60187028:60190201:-1 gene:Zm00001d029139 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha-humulene/(-)-(E)-beta-caryophyllene synthase
Sequence	ATGGCATCTCACAATGCTAGTGTTAGTGTCCCAGAGATGGCGTCGGGTTTCCATCCGACT GTATGGGGTGACTTCTTCATCGACTACAGTCCACAGCCATCGCAGGCATGCATGCCCTAT ACTACAAAGTCGGAGGAGTGGACAGCAGAGAGGATGAGCCAGCTAAAGGAGAAAATAGCT GGGCTATTCGGAGCCTGCACGACGACAGCCGAGCAACTCAACCTAGTGGACACGCTCCAG CATCTAAGCATAGACCACCATTTCAGCACCCAGATCCTCTCCGTCCTCACTAGCGCCCAC GCCGCGGAAGAACTCAACAGCGGCGGCGCCTGTCTCCACGACGTCGCCCTTCGGTTCCGC CTGCTGCGGCAGCAAGGGTTCTGGGTGTCTCCAGAGGTATTCGACCGGTTCAGAGACGAA AACGGGAGCTTTGACGTCGGCGTGGCAGACGACGACGCGAGGGGGCTGCTGAGCCTATAC AACGCGGCTTACCTTCTCACCCATGGAGAGGCAGAGCTCGAGGAGGCTGCATTGTTCGCC AGGCAGCGTCTTGAGTCCATGTCCATGAGAGGTAGCCTTGAGTACCCGCTGGCCCAGCAG GTGAGCCGAGCGCTCCACCTGCCACTGCCGCGGACGGTCAGAAGAGTCGAGACTCTGCAT TATGTCTCGGAGTACGGAGGAGACCCGACGCATGAGCATGAGCATGACCCCTCCGTTCTG GAGTTCGCCCGGCTGGATTTCGAGCTCTTGCAACGTCTCCACGTGAAGGAGCTCAAGGCT CTTTCTAGGTGGTGGAAAGATCTCTACAACGAAGCTGGAGTGACCTACTCGCGGGACCGC GTGGTGGAGTGCTACCTGTGGTCTTACACGGCGTACTACGAGGAAGAACACGCGAGGGCG AGGATGATCCTCGCTAAGATGATCGCGCTGATAATCTTGACGGACGACACCTACGACGTC CGCGCTACTCTGGAGGAGTGTCGAAGGTTCGATGAAGCTATACAGAGATGGGACGAGAGC GCTGTTTCTCTCCTGCCGGACTACCTGAAGAAGTTCTACCTCAAGCTGATGAACATCTTT GAGGAGTTTGAGGACGAGCTGGAACCACATGAGAAGTGCAGGGTCGCTTTTAGCAGAAAA GCGTTTCAAACATTATCGAGTAATTATCTCCAAGAAGCGGAATGGTTTCATGGCCGTTAC AAGCCAAGATTCGAAGATCAGGTAAAGGTATCCACTGTGTGCTCAGGCGCTCCATTCGCA GCTGTTGGGTTACTAGTTGGCATGGGAGGTGATGTAGCAACCCAGGAGGCACTTGAGTGG GCAATGGGTTGCACGGATGCTGTCAAGGCTTTCGCAGAGGTCACACGCTTCATGAATGAC CTTGCTTCGTATAAGCGTGGAAAGAACAAAAACGACGTGGACAGCTCGGTCGAATGCTAC ATCAGTGAGCATGGCGTCACAGCTGAGGTTGCCTTTGCACAGATAAGCTCCCTGATTGAA GATGCATGGAAAACTATAAACGGAGCACGCTTTGAGAACAGCAAACTACTTCCAGCAGTG CAGCGAGTTGCCGACATAACCGCCAGCATGCCGTTGATGTACGGTGACAACAAGGACGCG TTCACGTTCAGCGACGGTCTAAAGGGGCTCATCGAACGCCTGTTTCTCAACAGGCCATAA AACGAGTTTCGTCTTTAGTCTGAATATCGAGAGATGTGCTGAAAAGAGTAGCCCCCCTAG TAAGCTTTGTCTAGTCATCGTTAGTCTGGATACCATGTGATCTCAGATGCTTATACTTCT GGTCCGCATTTGTCAGTTTTGCCGCCTCTGTCAAACCCCTCGCAGCCACCATCTTCAGAA TATCGACACCCTCTCTCACGGCTGAATCGATCTAGGTTGTAGCAAAAGATGCAATCATGA TAAGCTCTGGTTGTTACAGTACATCAAATAAAGATAACTTGTTTGAATTTAAATATTCTT GTGCAAAACTATAGATTGTTGCAATACGATGATAATAAATTCTGATATGATGTTTGTGAC AATTGCATTAGTAGAATGAGCCCATGATCATCACTTGTAAAAACTCGGCAGTATGACTAT TAGATTATTATTTTTTTATTTCCCAACCTCCAACTTCAACTAAATCTTTCCATGACATGG TAGCATTAACTTGAACGGAAAGGAAACTCCAGGCCCGCAGTTTTCAAGAGGCTGGCTCAA GCCCAAGCCCAATTCTCTAAATGTCAATCTCCACCTTGATCTTAACTTTGACACCAAATT CAACGATACTACAAGTCTAAATCGATCTTCTCAACACACAAATCAAACAAGCATCACCAT ATTCCATATACTGT