Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d029040_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:1:55712147:55714961:1 gene:Zm00001d029040 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable inactive receptor kinase

Sequence

ATGGGTGATCGGAATCATGGACGCTCTCTCCCTCTACTGCTCTATCTACATCTTTTGCTG
CCAATACTTCCGTTTGCTATGGCAGATATAGCCTCCGAGAAGCAAGCACTCTTTGCTTTT
GCCTCTGCAGTCTACCATGGCAACAAGCTGAATTGGAGCCAAAATATCCCAGTGTGCTCA
TGGCATGGTGTGACATGCTCACTGGATCGATCATGTATATTGGCCCTTAGGGTGCCAGGT
GCTGGTTTGATTGGTACCATTCCTGCTGATACTCTTGGCAGGCTTGTGTCCCTCCAAGTT
TTAAGCATGAGGTCTAACCGTTTGAGTGGAAGCCTTCCGTACGATGTTGTCTCACTTCCT
TATTTACAAGCCATATTTGTTCAGCACAACGAATTGTCAGGAGACTTGCCTCCATTTCTC
TCTCCAAACCTTAATACCCTTGATCTCTCTTACAACTCCTTTACAGGACAAATCCCATCA
GGTTTGCAGAATCTTACCAAATTGTCTGTCTTGAATTTAGCAGAAAATTCCCTGTCCGGG
CCGATTCCGGATCTCAAACTTCCTAGCCTAAGACAGCTAAATCTGAGCAACAATGAACTG
AATGGTTCGATTCCTCCCTTTTTCCAAATCTTCTCAAATAGTTCCTTCCTAGGGAACTCT
GGATTGTGTGGACCGCCGCTAACTGAATGTTCTTTTCTATCTTCACCAACACCGTCGCAA
GTGCCTTCACCACCAAAATTACCAAATCATGAGAAGAAGGCTGGCAATGGCTTGGTAATC
GTGGCTGTTGCTGGGAGCTTTGTCATATTTCTGCTAGCTGCTGTGATGTTCACTATGTGC
ATTTCAAAGAGGAAGGAGAAGAAAGACGAAGCGGGTTACAACGGTAAGGTTACTGATGGT
GGAAGGGTTGAGAAGCGCAAAGAGGATCTCAGCAGCGGCGTCCAAATGGCGCATAAGAAC
AAGTTAGTTTTCTTGGAGGGATGCAGTTACAACTTTGACTTGGAGGACTTGCTGAGAGCT
TCTGCTGAAGTTCTCGGGAAAGGGAGCTATGGAACTGCCTACAAGGCTATACTCGAGGAT
GGCTCTACTGTGGTAGTCAAGAGGCTAAAGGATGTCGTGGCAGGGAAGAAAGAATTTGAG
CAGCAGATGGAGCTCATAGGGAGGGTAGGTAAACATGCAAACATCGCGCCTATTCGTGCT
TACTACTACTCGAAGGATGAGAAGCTTGTTGTTTATGAGTATATTGGTAGAGGCAGCTTC
TCAGCTCTGTTGCATGGTATCAAGGGCGTGTGTGAGAAGACCCCATTAGATTGGAACACA
AGGATGAAGATTATACTCGGAACAGCACGCGGCCTCGAGCACATCCATTCAGAAGGCGGC
TCCAGGCTCGCACACGGCAACATCAAGTCAACCAACGTTCTGCTCGACGGAGACCACAAC
CCTTACGTCTCAGACTACGGGCTGAGCTCGTTGACGAGCCTTCCGATCACCACTTCCCGA
GCTGTCGCTGGCTACCGAGCTCAGGAGACCTTCGAATCGAGGAAGTTCACCCACAAGTCC
GACGTGTACGGTTTCGGCGTCCTCCTCATGGAGACGCTGACGGGCAAGGCCCCGCTTCAG
TCACAGGGTCAGGACGACGCCGTCGACCTACCGAGGTGGGTGCATTCGGTGGTCCGCGAG
GAGTGGACCGCTGAGGTGTTTGACGTCCAGCTGATGAAGTATCCCAACATAGAAGACGAG
CTGGTCCAGATGCTCCGTATCGCCATGGCGTGCACGGCGTGGTCTCCCGACCGGCGTCCG
ACGATGGCGCAGGTGGTTAGGATGGTGGAGGAGCTCCGGCACTCTGCTTCCGGGAGTCGC
GCTCTCTCCGTTGGCAGTCCCAAGGAATCCAGTCCTCTGTCAGCCTGA

Peptide Sequence

PEP ID

Zm00001d029040_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:1:55712147:55714961:1 gene:Zm00001d029040 transcript:Zm00001d029040_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable inactive receptor kinase

Sequence

MGDRNHGRSLPLLLYLHLLLPILPFAMADIASEKQALFAFASAVYHGNKLNWSQNIPVCS
WHGVTCSLDRSCILALRVPGAGLIGTIPADTLGRLVSLQVLSMRSNRLSGSLPYDVVSLP
YLQAIFVQHNELSGDLPPFLSPNLNTLDLSYNSFTGQIPSGLQNLTKLSVLNLAENSLSG
PIPDLKLPSLRQLNLSNNELNGSIPPFFQIFSNSSFLGNSGLCGPPLTECSFLSSPTPSQ
VPSPPKLPNHEKKAGNGLVIVAVAGSFVIFLLAAVMFTMCISKRKEKKDEAGYNGKVTDG
GRVEKRKEDLSSGVQMAHKNKLVFLEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILED
GSTVVVKRLKDVVAGKKEFEQQMELIGRVGKHANIAPIRAYYYSKDEKLVVYEYIGRGSF
SALLHGIKGVCEKTPLDWNTRMKIILGTARGLEHIHSEGGSRLAHGNIKSTNVLLDGDHN
PYVSDYGLSSLTSLPITTSRAVAGYRAQETFESRKFTHKSDVYGFGVLLMETLTGKAPLQ
SQGQDDAVDLPRWVHSVVREEWTAEVFDVQLMKYPNIEDELVQMLRIAMACTAWSPDRRP
TMAQVVRMVEELRHSASGSRALSVGSPKESSPLSA

Transcript Sequence

Transcript ID

Zm00001d029040_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:55712147:55714961:1 gene:Zm00001d029040 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable inactive receptor kinase

Sequence

AGAAGCATGATTAGTTGAATACTGAGTTACTTTTCATGTTGTACTTTCTGTTTCAAGACA
TCTTGATCGTTTCTGAGATTAAACTGATGATGCTGATGCTCGTTTAGTTATCTTGGTTTG
GAGATATATCAGATATGGGTGATCGGAATCATGGACGCTCTCTCCCTCTACTGCTCTATC
TACATCTTTTGCTGCCAATACTTCCGTTTGCTATGGCAGATATAGCCTCCGAGAAGCAAG
CACTCTTTGCTTTTGCCTCTGCAGTCTACCATGGCAACAAGCTGAATTGGAGCCAAAATA
TCCCAGTGTGCTCATGGCATGGTGTGACATGCTCACTGGATCGATCATGTATATTGGCCC
TTAGGGTGCCAGGTGCTGGTTTGATTGGTACCATTCCTGCTGATACTCTTGGCAGGCTTG
TGTCCCTCCAAGTTTTAAGCATGAGGTCTAACCGTTTGAGTGGAAGCCTTCCGTACGATG
TTGTCTCACTTCCTTATTTACAAGCCATATTTGTTCAGCACAACGAATTGTCAGGAGACT
TGCCTCCATTTCTCTCTCCAAACCTTAATACCCTTGATCTCTCTTACAACTCCTTTACAG
GACAAATCCCATCAGGTTTGCAGAATCTTACCAAATTGTCTGTCTTGAATTTAGCAGAAA
ATTCCCTGTCCGGGCCGATTCCGGATCTCAAACTTCCTAGCCTAAGACAGCTAAATCTGA
GCAACAATGAACTGAATGGTTCGATTCCTCCCTTTTTCCAAATCTTCTCAAATAGTTCCT
TCCTAGGGAACTCTGGATTGTGTGGACCGCCGCTAACTGAATGTTCTTTTCTATCTTCAC
CAACACCGTCGCAAGTGCCTTCACCACCAAAATTACCAAATCATGAGAAGAAGGCTGGCA
ATGGCTTGGTAATCGTGGCTGTTGCTGGGAGCTTTGTCATATTTCTGCTAGCTGCTGTGA
TGTTCACTATGTGCATTTCAAAGAGGAAGGAGAAGAAAGACGAAGCGGGTTACAACGGTA
AGGTTACTGATGGTGGAAGGGTTGAGAAGCGCAAAGAGGATCTCAGCAGCGGCGTCCAAA
TGGCGCATAAGAACAAGTTAGTTTTCTTGGAGGGATGCAGTTACAACTTTGACTTGGAGG
ACTTGCTGAGAGCTTCTGCTGAAGTTCTCGGGAAAGGGAGCTATGGAACTGCCTACAAGG
CTATACTCGAGGATGGCTCTACTGTGGTAGTCAAGAGGCTAAAGGATGTCGTGGCAGGGA
AGAAAGAATTTGAGCAGCAGATGGAGCTCATAGGGAGGGTAGGTAAACATGCAAACATCG
CGCCTATTCGTGCTTACTACTACTCGAAGGATGAGAAGCTTGTTGTTTATGAGTATATTG
GTAGAGGCAGCTTCTCAGCTCTGTTGCATGGTATCAAGGGCGTGTGTGAGAAGACCCCAT
TAGATTGGAACACAAGGATGAAGATTATACTCGGAACAGCACGCGGCCTCGAGCACATCC
ATTCAGAAGGCGGCTCCAGGCTCGCACACGGCAACATCAAGTCAACCAACGTTCTGCTCG
ACGGAGACCACAACCCTTACGTCTCAGACTACGGGCTGAGCTCGTTGACGAGCCTTCCGA
TCACCACTTCCCGAGCTGTCGCTGGCTACCGAGCTCAGGAGACCTTCGAATCGAGGAAGT
TCACCCACAAGTCCGACGTGTACGGTTTCGGCGTCCTCCTCATGGAGACGCTGACGGGCA
AGGCCCCGCTTCAGTCACAGGGTCAGGACGACGCCGTCGACCTACCGAGGTGGGTGCATT
CGGTGGTCCGCGAGGAGTGGACCGCTGAGGTGTTTGACGTCCAGCTGATGAAGTATCCCA
ACATAGAAGACGAGCTGGTCCAGATGCTCCGTATCGCCATGGCGTGCACGGCGTGGTCTC
CCGACCGGCGTCCGACGATGGCGCAGGTGGTTAGGATGGTGGAGGAGCTCCGGCACTCTG
CTTCCGGGAGTCGCGCTCTCTCCGTTGGCAGTCCCAAGGAATCCAGTCCTCTGTCAGCCT
GAATTGTGGTTCTGATTCAGAATTCGTGTATCCATGACATCGATGATCGATGGTATCCTG
CATGTGGTTCACGGTGCACACGTTGTCTGCCTCGTCAGATACTTCGTACTGCTGTAACTT
TGGTTCAATGGAATGCTTAAGAAACAAGGTCGGAATAGGCGAATAGCTATTTTCGTCTTT
CACC