Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d029004_T120
CDS Infomation

cds chromosome:B73_RefGen_v4:1:54471056:54480565:1 gene:Zm00001d029004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Guanine nucleotide exchange factor SPIKE 1
Sequence

ATGGCTTGGTTTTTTCTGGAGCTTATTGTAAAATCAATGGGATTGGAACAAAGTCGTCTC
TTCTACCACAATCTTCCACTAGGTGAAGATGTCCCACCACTGCAATTGAAAGAAGGTGTC
TTCAGGTGCATCATGCAGCTCTTTGATTGCCTTCTAACTGAGGTTCATGAGCGTTGTAAA
AAGGGTTTAAGCTTGGCAAAACGCTTGAACAGCACACTTGCTTTCTTTTGCTATGATCTT
TTATCAATTATTGAGCCTCGCCAAGTTTTTGAGCTGGTTTCGTTGTACATGGACAAGTTT
GCAGGAGTTTGTCAATCAGTCCTTCATGACTGCAAATTGACATTCCTGCAGATAATATGC
GACCATGATCTATTCGTTGAGATGCCTGGGCGGGATCCTTCTGATAGAAACTATCTCTCG
TCAGTTCTCATCCAAGAGATCTTTCTGACCTTAGACCATGATGATTTATCTCAACGAGCG
AAGGCTGCTCGGATTTTGGTTGTCCTTATATGCAAACATGAATTTGATGCACGCTATCAA
AAAAGCGAAGACAAATTGTACATTGCTCAGCTGTATTTTCCTCTTATAGGGCAGATCCTT
GATGAGATGCCTGTTTTCTATAATCTGAATGCCATTGAAAAGCGTGAAGTGCTAGTTGTC
ATTTTGCAAATTGTGAGGAACTTGGATGATGCAACTCTTATCAAAGCATGGCAACAAAGC
ATTGCTAGAACCAGATTGTTCTTCAAGCTTCTTGAAGAATGTATAATCCATTTCGAGCAC
AACAAAACAGGAGACAACATGCTACTTGGTGCTAGTTCTCGGAGCCCAGATGTCGAGCAT
CCTGCATCCCCAAAGTACTCTGAACGATTGTCCCCATCGGTCAACACATATTTGTCGGAG
GCTTCGAGGCATGAAATAAGGCCTCAGGGAACACCAGAAAATGGATACATGTGGAACAGG
GTTAGCCCTCAATTAAGTTCCCCTAATCAGCCCTATTCATTGAGAGAAGCACTTGCTCAA
GCACAATCTTCAAGAATCGGGTCAACCGCCAGGGCATTGAGAGAGTCTCTACATCCAGTG
CTGAGACAAAAAATGGAACTTTGGGAAGAAAATCTCAGTACTGCCGTGAGCCTCGAAGTG
TTGGGAATAACTGAGAAGTTTTCAGTTGCTGCAGGCGCTCGAAGCATCACTACTGATTAC
GCGAAGCTAGATTGTGTAACATCAATCTTAATGGGTCTTTTATCTAGGAACCAATCCTTG
GCTTTTTGGAAGGCTTTCCTTCCTGTGGTCTACAATATATTTAATGTTCATGGTGCAACA
CTAATGGCAAGGGAGAATGACCGCTTCTTGAAGCAAATTGCTTTTCATCTTTTGCGGCTT
GCTGTTTTCCGAAACGATTCGATTAGAAAAAGAGCTGTTGTTGGGCTGCAGATTCTTGTT
AGGAACTCATTCAACTATTTCAAAAACACTACAAGGTTAAGGGTCATGTTGACAATTACT
TTGTCCGAGTTGATGTCCGACGTGCAAGTAACTCAAATGAAATTCGATGGTTCTCTTGAA
GAAAGTGGTGAAGCTCGGCGCCTTAGGAAATCACTGGAGGAAATGGCTGATGTGAGAAGC
AAGGATCTGTTAAAAGATTGTGGCCTCCCTGTTACTGCATTGGAGGCGGCCCCTGAAGGC
TCCTCTGATAATAGGTGGTCTTGGGTAGAGGTGAAACATTTGTCTAAATGTCTAGTCCAG
GCCCTTGATGCTGGTCTGGAACACGCCCTCCTGGGTTCTGTAGTGACTGTAGACAGGTAT
GCAGCTGCCGAGGGTTTCTATAAACTAGCTATGGCCTATGCACCCGTTCCAGATCTTCAC
ATTATGTGGTTGCTTCATCTGTGTGATGCACACCAGGAGATGCAATCATGGGCTGAAGCA
GCACAATGTGCAGTTGCTGTAGCTGGCGTGATCATGCAGGCACTTGTTGGAAGGAATGAT
GCTGTGTGGAGCAAGGAGCATGTTGCTTCGCTGCGCAAGATTTGCCCTATTGTCAACACT
GATGTGAGTGCAGAAGCATCTGCAGCTGAAGTCGAGGGATATGGTGCATCCAAATTAACA
GTGGACTCAGCGGTCAAATATCTTCAACTAGCCAATAAACTTTTCACACAAGCTGAACTC
TACCATTTTTGTGCAAGCATTCAGGAACTCATAATTCCTGTGTATAAAAGCAGAAGGGCT
TATGGACAGCTGGCCAAATGCCACACATCGCTCACAAACATCTATGAGTCAATTCTTGAA
CAGGAGGCTAGCCCTATACCATTCATTGATGCCACATACTACCGAGTTGGTTTCTATGGT
GAGCGTTTTGGCAAGCTCAATAAAAAGGAGTATGTATTTAGAGAACCACGGGATGTACGT
CTTGGTGATATTATGGAGAAGCTTAGTCATATATATGAGGCTAAAATAGATGGAAGTCAC
ACTTTACACATAATTCCAGACTCTAGACAAGTCAACGCTGATGAGTTGCAGCCTGGCTTC
TGCTATTTACAGATCACTGCTGTTGATCCTGTGATGGAGGATGAGGACTTGGGTAGCAGG
AGGGAAAGAATATTTTCTTTATCTACTGGTACTGTTCGTGCACGTGTTTTTGACCGTTTT
CTTTTCGATACACCATTCACAAAAAATGGAAAAACACAAGGTGGTCTAGAAGACCAGTGG
AAGAGGCGCACAGTGCTCCAAACAGAGGGTTCCTTTCCCGCTTTGGTGAACCGTCTGCCA
GTTATCAAATCTGAATCTCTGGAGTTCTCTCCTGTCGAGAATGCGATTGGAATGATCGAA
ACAAGGACAGCTGCATTGAGAAATGAGCTAGAAGAACCACGGAGTTCTGAAGGTGATCAA
CTCCCAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGGTCAAC
AGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCAGCGACTAGGCTCAGA
TCCCAAGAACTGCAGCAGCTCATCGCTGCATTGCTTGAATTCATGGCTGTCTGCAAGCGT
GCAATCCGTGTGCATTTCAGATTGATAGGGGAAGAAGACCAGGAATTCCACACCCAACTT
GTCAATGGGTTCCAGTCACTCACCGCTGAGCTATCTCACTATATCCCTGCTATACTCTCC
GAGCTATGA

Peptide Sequence

PEP ID

Zm00001d029004_P120
PEP Infomation

pep chromosome:B73_RefGen_v4:1:54471056:54480565:1 gene:Zm00001d029004 transcript:Zm00001d029004_T120 gene_biotype:protein_coding transcript_biotype:protein_coding description:Guanine nucleotide exchange factor SPIKE 1
Sequence

MAWFFLELIVKSMGLEQSRLFYHNLPLGEDVPPLQLKEGVFRCIMQLFDCLLTEVHERCK
KGLSLAKRLNSTLAFFCYDLLSIIEPRQVFELVSLYMDKFAGVCQSVLHDCKLTFLQIIC
DHDLFVEMPGRDPSDRNYLSSVLIQEIFLTLDHDDLSQRAKAARILVVLICKHEFDARYQ
KSEDKLYIAQLYFPLIGQILDEMPVFYNLNAIEKREVLVVILQIVRNLDDATLIKAWQQS
IARTRLFFKLLEECIIHFEHNKTGDNMLLGASSRSPDVEHPASPKYSERLSPSVNTYLSE
ASRHEIRPQGTPENGYMWNRVSPQLSSPNQPYSLREALAQAQSSRIGSTARALRESLHPV
LRQKMELWEENLSTAVSLEVLGITEKFSVAAGARSITTDYAKLDCVTSILMGLLSRNQSL
AFWKAFLPVVYNIFNVHGATLMARENDRFLKQIAFHLLRLAVFRNDSIRKRAVVGLQILV
RNSFNYFKNTTRLRVMLTITLSELMSDVQVTQMKFDGSLEESGEARRLRKSLEEMADVRS
KDLLKDCGLPVTALEAAPEGSSDNRWSWVEVKHLSKCLVQALDAGLEHALLGSVVTVDRY
AAAEGFYKLAMAYAPVPDLHIMWLLHLCDAHQEMQSWAEAAQCAVAVAGVIMQALVGRND
AVWSKEHVASLRKICPIVNTDVSAEASAAEVEGYGASKLTVDSAVKYLQLANKLFTQAEL
YHFCASIQELIIPVYKSRRAYGQLAKCHTSLTNIYESILEQEASPIPFIDATYYRVGFYG
ERFGKLNKKEYVFREPRDVRLGDIMEKLSHIYEAKIDGSHTLHIIPDSRQVNADELQPGF
CYLQITAVDPVMEDEDLGSRRERIFSLSTGTVRARVFDRFLFDTPFTKNGKTQGGLEDQW
KRRTVLQTEGSFPALVNRLPVIKSESLEFSPVENAIGMIETRTAALRNELEEPRSSEGDQ
LPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSQELQQLIAALLEFMAVCKR
AIRVHFRLIGEEDQEFHTQLVNGFQSLTAELSHYIPAILSEL

Transcript Sequence

Transcript ID

Zm00001d029004_T120
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:54471056:54480565:1 gene:Zm00001d029004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Guanine nucleotide exchange factor SPIKE 1
Sequence

GCGAAAGGTTATAGAGTTGGTCCTGTGTATGATGATGTGTTGGCAATGGCTTGGTTTTTT
CTGGAGCTTATTGTAAAATCAATGGGATTGGAACAAAGTCGTCTCTTCTACCACAATCTT
CCACTAGGTGAAGATGTCCCACCACTGCAATTGAAAGAAGGTGTCTTCAGGTGCATCATG
CAGCTCTTTGATTGCCTTCTAACTGAGGTTCATGAGCGTTGTAAAAAGGGTTTAAGCTTG
GCAAAACGCTTGAACAGCACACTTGCTTTCTTTTGCTATGATCTTTTATCAATTATTGAG
CCTCGCCAAGTTTTTGAGCTGGTTTCGTTGTACATGGACAAGTTTGCAGGAGTTTGTCAA
TCAGTCCTTCATGACTGCAAATTGACATTCCTGCAGATAATATGCGACCATGATCTATTC
GTTGAGATGCCTGGGCGGGATCCTTCTGATAGAAACTATCTCTCGTCAGTTCTCATCCAA
GAGATCTTTCTGACCTTAGACCATGATGATTTATCTCAACGAGCGAAGGCTGCTCGGATT
TTGGTTGTCCTTATATGCAAACATGAATTTGATGCACGCTATCAAAAAAGCGAAGACAAA
TTGTACATTGCTCAGCTGTATTTTCCTCTTATAGGGCAGATCCTTGATGAGATGCCTGTT
TTCTATAATCTGAATGCCATTGAAAAGCGTGAAGTGCTAGTTGTCATTTTGCAAATTGTG
AGGAACTTGGATGATGCAACTCTTATCAAAGCATGGCAACAAAGCATTGCTAGAACCAGA
TTGTTCTTCAAGCTTCTTGAAGAATGTATAATCCATTTCGAGCACAACAAAACAGGAGAC
AACATGCTACTTGGTGCTAGTTCTCGGAGCCCAGATGTCGAGCATCCTGCATCCCCAAAG
TACTCTGAACGATTGTCCCCATCGGTCAACACATATTTGTCGGAGGCTTCGAGGCATGAA
ATAAGGCCTCAGGGAACACCAGAAAATGGATACATGTGGAACAGGGTTAGCCCTCAATTA
AGTTCCCCTAATCAGCCCTATTCATTGAGAGAAGCACTTGCTCAAGCACAATCTTCAAGA
ATCGGGTCAACCGCCAGGGCATTGAGAGAGTCTCTACATCCAGTGCTGAGACAAAAAATG
GAACTTTGGGAAGAAAATCTCAGTACTGCCGTGAGCCTCGAAGTGTTGGGAATAACTGAG
AAGTTTTCAGTTGCTGCAGGCGCTCGAAGCATCACTACTGATTACGCGAAGCTAGATTGT
GTAACATCAATCTTAATGGGTCTTTTATCTAGGAACCAATCCTTGGCTTTTTGGAAGGCT
TTCCTTCCTGTGGTCTACAATATATTTAATGTTCATGGTGCAACACTAATGGCAAGGGAG
AATGACCGCTTCTTGAAGCAAATTGCTTTTCATCTTTTGCGGCTTGCTGTTTTCCGAAAC
GATTCGATTAGAAAAAGAGCTGTTGTTGGGCTGCAGATTCTTGTTAGGAACTCATTCAAC
TATTTCAAAAACACTACAAGGTTAAGGGTCATGTTGACAATTACTTTGTCCGAGTTGATG
TCCGACGTGCAAGTAACTCAAATGAAATTCGATGGTTCTCTTGAAGAAAGTGGTGAAGCT
CGGCGCCTTAGGAAATCACTGGAGGAAATGGCTGATGTGAGAAGCAAGGATCTGTTAAAA
GATTGTGGCCTCCCTGTTACTGCATTGGAGGCGGCCCCTGAAGGCTCCTCTGATAATAGG
TGGTCTTGGGTAGAGGTGAAACATTTGTCTAAATGTCTAGTCCAGGCCCTTGATGCTGGT
CTGGAACACGCCCTCCTGGGTTCTGTAGTGACTGTAGACAGGTATGCAGCTGCCGAGGGT
TTCTATAAACTAGCTATGGCCTATGCACCCGTTCCAGATCTTCACATTATGTGGTTGCTT
CATCTGTGTGATGCACACCAGGAGATGCAATCATGGGCTGAAGCAGCACAATGTGCAGTT
GCTGTAGCTGGCGTGATCATGCAGGCACTTGTTGGAAGGAATGATGCTGTGTGGAGCAAG
GAGCATGTTGCTTCGCTGCGCAAGATTTGCCCTATTGTCAACACTGATGTGAGTGCAGAA
GCATCTGCAGCTGAAGTCGAGGGATATGGTGCATCCAAATTAACAGTGGACTCAGCGGTC
AAATATCTTCAACTAGCCAATAAACTTTTCACACAAGCTGAACTCTACCATTTTTGTGCA
AGCATTCAGGAACTCATAATTCCTGTGTATAAAAGCAGAAGGGCTTATGGACAGCTGGCC
AAATGCCACACATCGCTCACAAACATCTATGAGTCAATTCTTGAACAGGAGGCTAGCCCT
ATACCATTCATTGATGCCACATACTACCGAGTTGGTTTCTATGGTGAGCGTTTTGGCAAG
CTCAATAAAAAGGAGTATGTATTTAGAGAACCACGGGATGTACGTCTTGGTGATATTATG
GAGAAGCTTAGTCATATATATGAGGCTAAAATAGATGGAAGTCACACTTTACACATAATT
CCAGACTCTAGACAAGTCAACGCTGATGAGTTGCAGCCTGGCTTCTGCTATTTACAGATC
ACTGCTGTTGATCCTGTGATGGAGGATGAGGACTTGGGTAGCAGGAGGGAAAGAATATTT
TCTTTATCTACTGGTACTGTTCGTGCACGTGTTTTTGACCGTTTTCTTTTCGATACACCA
TTCACAAAAAATGGAAAAACACAAGGTGGTCTAGAAGACCAGTGGAAGAGGCGCACAGTG
CTCCAAACAGAGGGTTCCTTTCCCGCTTTGGTGAACCGTCTGCCAGTTATCAAATCTGAA
TCTCTGGAGTTCTCTCCTGTCGAGAATGCGATTGGAATGATCGAAACAAGGACAGCTGCA
TTGAGAAATGAGCTAGAAGAACCACGGAGTTCTGAAGGTGATCAACTCCCAAGGCTTCAG
AGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGGTCAACAGTGGGGTATTAAGT
GTGTGCACTGCATTCTTATCTGGTGAGCCAGCGACTAGGCTCAGATCCCAAGAACTGCAG
CAGCTCATCGCTGCATTGCTTGAATTCATGGCTGTCTGCAAGCGTGCAATCCGTGTGCAT
TTCAGATTGATAGGGGAAGAAGACCAGGAATTCCACACCCAACTTGTCAATGGGTTCCAG
TCACTCACCGCTGAGCTATCTCACTATATCCCTGCTATACTCTCCGAGCTATGATAGAAC
TGTAGCAAGCCAGAAATTAGGTAGCATGTGAATGGTTGTTCATTCATTCAGTTGCAGGTT
CCCACCAAATGTCCATATTTCCATTAGCTTTGGTTGTATAGTTAACCGATTCCTGATTTT
GGAGTGTAAAGTCTGTATAATACCTAGTGTTATCTGTTATGCACCAGTTATATGCTGAGT
TCCTTCTTTTTTGCAGTTTGCTACTATGTCACAACTAGCGGACATTTTGCACTTGTATTG
TGATACATAGTGCATATATATATATATATATATATATAT