Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028915_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:1:51101145:51160381:1 gene:Zm00001d028915 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chloroplast protein HCF243
Sequence

ATGCATGTTTTGCCAGACCTGGATTTTGTAGAGAAGAAGTATAAAGAAAAACCTTTCACT
GTTGTTGGTGTGCACTCTGCCAAATTCGATAATGAAAAGGACCTTGAAGCTATACGTAAT
GCTGTTCTGCGCTACAACATTACTCACCCGGTTGTAAATGATGGTGACATGTACTTGTGG
AGAGAACTGGGGGTGAACTCTTGGCCTACATTTGTTCTTATTGGACCCAACGGAAAGGTT
CTAGCACAGATATCAGGTGAAGGTCATAGAAAGGATCTGGATGAAGTAATTGGTGCAGCA
CTGGAATTTTATGAAGAGAAGAAACTATTACAAAATGACCCCCTTCCCTTGGCATTGGAA
AAAGACAAGGATAGTCGTTTACTAACTTCGCCTCTCAAATTTCCTGGGAAACTTGCTGTT
GATGTGCAAAACAATCGATTATTCATATCAGACAGTAATCATAATCGAATTGTGGTGACC
AACTTGGAAGGGCAGTTCATATACCAAGTTGGGAGTTCTGAGGAAGGATTGCTTGATGGC
CCATTTGATGCTGCCCTATTTAACCGCCCTCAAGGTATTGCTTACAATTCAAAAAGGAAT
ATCTTATACGTTGCAGACACTGAGAACCACGCTCTGCGAGAAATTAATTTTGTGGACGAG
ACTGTGAGAACACTAGCTGGAAATGGGACGAAAGGATCTGATTACAGAGGAGGAGGACAA
GGAACAAACCAGGTCCTAAATTCACCATGGGATGTATGCTACGATCCCGCAGAGGAGGCC
GTGTATATTGCAATGGCTGGGCAACACCAGATCTGGAAGCACAATTTACATGATGGAATA
ACCAAAGTTATTAGCGGTGATGGCTATGAGAGGAATCTGAATGGCTCAAGCGCCACCAGC
ACATCGTTTGCACAGCCTTCTGGGATTTCATTAGCTTTTGAAATGCATGAGTTACTTGTT
GCTGATAGTGAAAGTAGTTCCATTCGAGTTGTTAATCTGAAGACAGGAGGCTCAAGATTG
CTGGCTGGAGGAGATCCAGTATTTCCAGAAAATTTGTTTAGGTTTGGAGATTATGACGGG
ACTGGCTCAGATGTGCTACTTCAACATCCCTTGGGTGTTGTTTATGCCAATGACAATCAA
GTATATATAGCTGATTCCTACAACCATAAGATAAAAAAGTTAGATCCCGTCACAAGAAAA
GTTACAACTATTGCTGGAACGGGGAGTGCAGGATACAGGGATGGTCCAGGCTTGACAGCT
CAACTTTCTGAACCAGCAGGACTTGTTGAAGTTGGAGATGGAAGGCTTCTTGTAGCAGAT
ACAAACAACAACACAATCAGATATATAACTCTTAGTGACAAAGGTGCTGAGGTGAAGACA
CTAGAGTTGATCGGAGTACAACCGCCATCACCAAAACCGAAGGTGTTGAAACGCCTAAGA
CGGCGATTATCGGCAGATACAGATGTTATTAATGTCGATGGTGGTTCTTCAAAGGAAGGA
TTCTTGTCTCTTGCAGTTACAGTACCTGATGGTTACCATTTCTCCAAGGAAGCCCGCAGT
AAATTTGATGTGGAAACAGAGCCGCCTAATGCAGTTGAGATTGAACCAGCGAACGGTTTT
CTAAACTCGGAAGGGCTGGCATCACTGAAGTTCAGAAGGATATCATCATCCTTGTCAATG
GGAAGGATAAACTGCAAGGTTTACTACTGTAAAGAAGATGAAGTTTGTCTCTACCAATCG
ATTGCTTTTGATGTCAAATTCCGTGAAGAGGCGGAACCGAACCCAGCACAAATTACGCTA
TCCTATACTGTTTCGCCAAGAGATAATTCAGGTAGCACACAACTACTGGCTGCTAGAAAG
AATGCCAAGGTGTAG

Peptide Sequence

PEP ID

Zm00001d028915_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:1:51101145:51160381:1 gene:Zm00001d028915 transcript:Zm00001d028915_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chloroplast protein HCF243
Sequence

MHVLPDLDFVEKKYKEKPFTVVGVHSAKFDNEKDLEAIRNAVLRYNITHPVVNDGDMYLW
RELGVNSWPTFVLIGPNGKVLAQISGEGHRKDLDEVIGAALEFYEEKKLLQNDPLPLALE
KDKDSRLLTSPLKFPGKLAVDVQNNRLFISDSNHNRIVVTNLEGQFIYQVGSSEEGLLDG
PFDAALFNRPQGIAYNSKRNILYVADTENHALREINFVDETVRTLAGNGTKGSDYRGGGQ
GTNQVLNSPWDVCYDPAEEAVYIAMAGQHQIWKHNLHDGITKVISGDGYERNLNGSSATS
TSFAQPSGISLAFEMHELLVADSESSSIRVVNLKTGGSRLLAGGDPVFPENLFRFGDYDG
TGSDVLLQHPLGVVYANDNQVYIADSYNHKIKKLDPVTRKVTTIAGTGSAGYRDGPGLTA
QLSEPAGLVEVGDGRLLVADTNNNTIRYITLSDKGAEVKTLELIGVQPPSPKPKVLKRLR
RRLSADTDVINVDGGSSKEGFLSLAVTVPDGYHFSKEARSKFDVETEPPNAVEIEPANGF
LNSEGLASLKFRRISSSLSMGRINCKVYYCKEDEVCLYQSIAFDVKFREEAEPNPAQITL
SYTVSPRDNSGSTQLLAARKNAKV

Transcript Sequence

Transcript ID

Zm00001d028915_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:51101145:51160381:1 gene:Zm00001d028915 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chloroplast protein HCF243
Sequence

GGGGTTCTGCCACATATGTTCCTGAGTTTCCAAGAAAGCTTGACTGGTTGAATACAGCCC
CACTTCAGTTTGGAAGAGATTTGAAAGGAAGAGTGGTGCTGCTGGATTTTTGGACATATT
GCTGCATTAACTGCATGCATGTTTTGCCAGACCTGGATTTTGTAGAGAAGAAGTATAAAG
AAAAACCTTTCACTGTTGTTGGTGTGCACTCTGCCAAATTCGATAATGAAAAGGACCTTG
AAGCTATACGTAATGCTGTTCTGCGCTACAACATTACTCACCCGGTTGTAAATGATGGTG
ACATGTACTTGTGGAGAGAACTGGGGGTGAACTCTTGGCCTACATTTGTTCTTATTGGAC
CCAACGGAAAGGTTCTAGCACAGATATCAGGTGAAGGTCATAGAAAGGATCTGGATGAAG
TAATTGGTGCAGCACTGGAATTTTATGAAGAGAAGAAACTATTACAAAATGACCCCCTTC
CCTTGGCATTGGAAAAAGACAAGGATAGTCGTTTACTAACTTCGCCTCTCAAATTTCCTG
GGAAACTTGCTGTTGATGTGCAAAACAATCGATTATTCATATCAGACAGTAATCATAATC
GAATTGTGGTGACCAACTTGGAAGGGCAGTTCATATACCAAGTTGGGAGTTCTGAGGAAG
GATTGCTTGATGGCCCATTTGATGCTGCCCTATTTAACCGCCCTCAAGGTATTGCTTACA
ATTCAAAAAGGAATATCTTATACGTTGCAGACACTGAGAACCACGCTCTGCGAGAAATTA
ATTTTGTGGACGAGACTGTGAGAACACTAGCTGGAAATGGGACGAAAGGATCTGATTACA
GAGGAGGAGGACAAGGAACAAACCAGGTCCTAAATTCACCATGGGATGTATGCTACGATC
CCGCAGAGGAGGCCGTGTATATTGCAATGGCTGGGCAACACCAGATCTGGAAGCACAATT
TACATGATGGAATAACCAAAGTTATTAGCGGTGATGGCTATGAGAGGAATCTGAATGGCT
CAAGCGCCACCAGCACATCGTTTGCACAGCCTTCTGGGATTTCATTAGCTTTTGAAATGC
ATGAGTTACTTGTTGCTGATAGTGAAAGTAGTTCCATTCGAGTTGTTAATCTGAAGACAG
GAGGCTCAAGATTGCTGGCTGGAGGAGATCCAGTATTTCCAGAAAATTTGTTTAGGTTTG
GAGATTATGACGGGACTGGCTCAGATGTGCTACTTCAACATCCCTTGGGTGTTGTTTATG
CCAATGACAATCAAGTATATATAGCTGATTCCTACAACCATAAGATAAAAAAGTTAGATC
CCGTCACAAGAAAAGTTACAACTATTGCTGGAACGGGGAGTGCAGGATACAGGGATGGTC
CAGGCTTGACAGCTCAACTTTCTGAACCAGCAGGACTTGTTGAAGTTGGAGATGGAAGGC
TTCTTGTAGCAGATACAAACAACAACACAATCAGATATATAACTCTTAGTGACAAAGGTG
CTGAGGTGAAGACACTAGAGTTGATCGGAGTACAACCGCCATCACCAAAACCGAAGGTGT
TGAAACGCCTAAGACGGCGATTATCGGCAGATACAGATGTTATTAATGTCGATGGTGGTT
CTTCAAAGGAAGGATTCTTGTCTCTTGCAGTTACAGTACCTGATGGTTACCATTTCTCCA
AGGAAGCCCGCAGTAAATTTGATGTGGAAACAGAGCCGCCTAATGCAGTTGAGATTGAAC
CAGCGAACGGTTTTCTAAACTCGGAAGGGCTGGCATCACTGAAGTTCAGAAGGATATCAT
CATCCTTGTCAATGGGAAGGATAAACTGCAAGGTTTACTACTGTAAAGAAGATGAAGTTT
GTCTCTACCAATCGATTGCTTTTGATGTCAAATTCCGTGAAGAGGCGGAACCGAACCCAG
CACAAATTACGCTATCCTATACTGTTTCGCCAAGAGATAATTCAGGTAGCACACAACTAC
TGGCTGCTAGAAAGAATGCCAAGGTGTAGTCAGACTCACGGTGATTTTTTTACTTGCATC
ATTGTATTGATTGTCAATTTGGCCCCAGGCCCACAATGGCAAGTGTTTCAAGATTGACTT
CTCCTGTATGTTGTATAGCGACATGTTGCTTGTAACCCAGCTTCATTGTCTCCCCTC