Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d028905_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:1:50443216:50455013:1 gene:Zm00001d028905 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochromeB1 description:Phytochrome B
Sequence	ATGGCGTCGGGCAGCCGCGCCACGCCCACGCGCTCCCCCTCCTCCGCGCGGCCCGAGGCG CCGCGTCACGCGCACCACCACCACCACTCCCAGTCGTCGGGCGGGAGCACGTCCCGCGCG GGCGGGGGAGCCGCGGCCACGGAGTCGGTCTCCAAGGCCGTCGCCCAGTACACCCTAGAC GCGCGCCTACACGCGGTGTTCGAGCAATCGGGCGCGTCGGGCCGCAGCTTCGACTACTCC CAATCGCTGCGCGCGCCGCCCACGCCGTCCTCCGAGCAGCAGATCGCCGCCTACCTCTCC CGCATCCAGCGCGGCGGCCACATCCAGCCCTTCGGCTGCACGCTCGCCGTCGCCGACGAC TCCTCCTTCCGCCTCCTCGCCTTCTCCGAGAACTCCCCCGACCTGCTCGACCTGTCGCCT CACCACTCCGTTCCCTCGCTGGACTCCTCTGCGCCGCCCCACGTTTCCCTGGGTGCCGAC GCGCGCCTCCTCTTCTCCCCCTCGTCCGCGGTCCTCCTAGAGCGCGCCTTCGCCGCGCGC GAGATCTCGCTGCTCAACCCGATATGGATCCACTCCAGGGTCTCCTCCAAGCCGTTCTAC GCCATCCTCCACCGCATCGACGTCGGCGTCGTCATCGACCTCGAGCCCGCCCGCACCGAG GACCCCGCTCTCTCCATCGCCGGTGCAGTCCAGTCCCAGAAACTGGCGGTCCGCGCCATC TCCCGCCTCCAGGCGCTACCCGGCGGGGACGTCAAGCTTCTCTGCGACACAGTCGTGGAG CATGTTCGCGAGCTCACGGGTTATGACCGTGTCATGGTGTACAGGTTCCATGAAGACGAG CACGGGGAAGTTGTCGCCGAGAGCCGGCGCGACAACCTTGAGCCTTACCTCGGATTGCAT TATCCCGCCACAGATATCCCCCAGGCGTCGCGCTTCCTGTTCCGGCAGAACCGCGTGCGA ATGATTGCCGATTGCCATGCCACCCCGGTGAGAGTTATTCAAGATCCTGGGCTGTCGCAG CCTCTGTGTTTGGTAGGCTCCACGCTACGCGCTCCACACGGGTGTCATGCACAGTACATG GCGAACATGGGGTCAATTGCGTCGCTTGTTATGGCAGTCATCATTAGCAGTGGCGGTGAC GATGAGCAAACAGGTCGGGGTGGCATCTCGTCGGCAATGAAGTTGTGGGGGTTAGTGGTG TGCCACCATACATCACCACGGTGTATCCCTTTTCCATTGAGGTATGCTTGCGAGTTTCTC ATGCAGGCATTTGGGTTGCAGCTCAACATGGAGTTGCAGCTTGCGCACCAGCTGTCAGAG AAGCACATTCTGCGAACTCAGACGCTATTGTGTGACATGCTACTACGAGATTCACCAACT GGCATCGTCACGCAGAGCCCCAGCATCATGGACCTTGTGAAGTGCGACGGGGCTGCACTG TATTATCATGGGAAATACTATCCATTGGGTGTCACTCCCACTGAGTCTCAGATTAAGGAT ATCATCGAGTGGTTGACGGTGTTTCATGGGGACTCAACAGGGCTCAGCACAGATAGCCTG GCTGATGCAGGCTACCTTGGTGCTGCTGCACTAGGGGAGGCTGTGTGTGGAATGGCGGTG GCTTATATTACACCGAGTGATTACTTGTTTTGGTTTCGGTCACACACAGCTAAAGAGATC AAATGGGGTGGCGCAAAGCATCACCCTGAGGATAAGGATGATGGTCAGAGGATGCACCCA CGGTCGTCATTCAAGGCATTTCTTGAAGTGGTTAAAAGCAGAAGCCTGCCATGGGAGAAT GCAGAAATGGACGCAATACATTCCTTGCAGCTCATATTGCGTGACTCCTTCAGGGATGCT GCAGAGGGCACCAACAACTCAAAAGCCATTGTCAATGGACAAGTTCAGCTTCGGGAGCTA GAATTGCGGGGGATAAATGAGCTTAGTTCCGTAGCAAGAGAGATGGTTCGGTTGATAGAG ACAGCAACAGTACCCATATTTGCAGTAGATACTGATGGGTGTATAAATGGTTGGAATGCA AAGATTGCTGAGTTGACAGGGCTTTCAGTTGAGGAGGCAATGGGCAAATCTCTGGTAAAT GATCTTATCTTCAAGGAATCTGAGGCGACAGTTGAAAAACTACTCTCACGAGCTTTAAGA GGTGAGGAAGACAAAAATGTGGAGATAAAGTTGAAGACATTTGGGTCAGAGCAATCTAAG GGACCAATATTTGTTGTTGTCAATGCTTGTTCTAGTAGAGATTACACACAAAATATTGTT GGTGTCTGTTTTGTTGGACAAGATGTCACAGGACAAAAGGTGGTCATGGATAAATTTGTT AACATACAAGGGGACTACAAAGCTATTGTACACAATCCTAATCCTCTGATACCACCAATT TTTGCATCAGATGAGAACACTTCTTGTTCAGAATGGAATACAGCCATGGAAAAACTTACA GGATGGTCGAGAGGTGAAGTTGTTGGTAAGTTTCTTATTGGAGAGGTGTTTGGAAATTGT TGTCGACTCAAGGGCCCAGATGCATTGACAAAATTCATGGTTATTATTCACAACGCTATA GGAGGACAGGATTATGAGAAGTTCCCTTTTTCATTTTTTGACAAGAATGGAAAGTATGTG CAGGCCTTATTGACCGCCAATACAAGGAGCAAAATGGATGGTAAATCCATTGGAGCCTTT TGTTTCCTGCAGATTGCAAGCACTGAAATACAGCAAGCCTTTGAGATTCAGAGACAACAA GAAAAGAAGTGTTACGCAAGGATGAAAGAATTGGCCTATATTTGCCAGGAGATAAAGAAT CCTCTTAGTGGCATCCGATTTACCAACTCTCTGTTGCAGATGACTGATTTAAATGATGAC CAGAGGCAGTTCCTTGAAACTAGCTCTGCTTGTGAGAAACAGATGTCCAAGATTGTTAAG GACGCCAGTCTCCAAAGTATCGAGGACGGCTCTTTGGTGCTTGAGCAAAGTGAGTTTTCT CTTGGAGACGTTATGAATGCTGTTGTCAGCCAAGCAATGTTATTGTTGAGAGAGAGGGAT TTACAACTTATTCGGGACATCCCTGATGAAATCAAGGATGCGTCAGCGTATGGTGATCAA TGTAGAATTCAACAAGTTTTGGCTGACTTCTTGCTAAGCATGGTGCGGTCTGCTCCATCC GAGAATGGTTGGGTAGAAATACAAGTCAGACCAAATGTAAAACAGAATTCTGATGGAACA AATACAGAACTTTTCATATTCAGGTTTGCCTGCCCTGGTGAGGGCCTCCCTGCTGACGTC GTCCAGGATATGTTCAGCAATTCCCAATGGTCAACACAAGAAGGCGTAGGACTAAGCACA TGCAGGAAGATCCTCAAATTGATGGGTGGCGAGGTCCAATACATCAGAGAGTCAGAGCGG AGTTTCTTCCTCATCGTCCTCGAGCAGCCCCAACCTCGTCCAGCAGCTGGTAGAGAAATC GTCTGA

Peptide Sequence

PEP ID	Zm00001d028905_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:1:50443216:50455013:1 gene:Zm00001d028905 transcript:Zm00001d028905_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochromeB1 description:Phytochrome B
Sequence	MASGSRATPTRSPSSARPEAPRHAHHHHHSQSSGGSTSRAGGGAAATESVSKAVAQYTLD ARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPFGCTLAVADD SSFRLLAFSENSPDLLDLSPHHSVPSLDSSAPPHVSLGADARLLFSPSSAVLLERAFAAR EISLLNPIWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAI SRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRRDNLEPYLGLH YPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGLSQPLCLVGSTLRAPHGCHAQYM ANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHHTSPRCIPFPLRYACEFL MQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAAL YYHGKYYPLGVTPTESQIKDIIEWLTVFHGDSTGLSTDSLADAGYLGAAALGEAVCGMAV AYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWEN AEMDAIHSLQLILRDSFRDAAEGTNNSKAIVNGQVQLRELELRGINELSSVAREMVRLIE TATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEATVEKLLSRALR GEEDKNVEIKLKTFGSEQSKGPIFVVVNACSSRDYTQNIVGVCFVGQDVTGQKVVMDKFV NIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWSRGEVVGKFLIGEVFGNC CRLKGPDALTKFMVIIHNAIGGQDYEKFPFSFFDKNGKYVQALLTANTRSKMDGKSIGAF CFLQIASTEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSLLQMTDLNDD QRQFLETSSACEKQMSKIVKDASLQSIEDGSLVLEQSEFSLGDVMNAVVSQAMLLLRERD LQLIRDIPDEIKDASAYGDQCRIQQVLADFLLSMVRSAPSENGWVEIQVRPNVKQNSDGT NTELFIFRFACPGEGLPADVVQDMFSNSQWSTQEGVGLSTCRKILKLMGGEVQYIRESER SFFLIVLEQPQPRPAAGREIV

Transcript Sequence

Transcript ID	Zm00001d028905_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:50443216:50455013:1 gene:Zm00001d028905 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phytochromeB1 description:Phytochrome B
Sequence	CACTTCAGCTTTCAAGTTTGGAGTTCGTCGTCGTCCCCAGCGTGACTGCGCGAGTGCTAT CCATTCCAAACCTGAAACCACTGCGGCCCAACCCGGCAACCCCGATCCCCACTTCCCCAG TACCATCCCTATCCCAGCCACGCCATCGTCATCGCCTTGCGCGCAATATCCTTGGCTCCA CGCCCCAGTAAGCGACCAGTGACAGTGAGAGCGGTGAAGCAAACCAAAGCAAAGCTATCG GAAGAACCTCAGTCGAGGGGGCGAGCGAGCCGACGAGACGACTGACGAGCGCACAAGACC GGACGGGGCCGCCTAATCCAGAGAGAGCCCCAGGTCTCCCCCAACCCCGCCATGGCGTCG GGCAGCCGCGCCACGCCCACGCGCTCCCCCTCCTCCGCGCGGCCCGAGGCGCCGCGTCAC GCGCACCACCACCACCACTCCCAGTCGTCGGGCGGGAGCACGTCCCGCGCGGGCGGGGGA GCCGCGGCCACGGAGTCGGTCTCCAAGGCCGTCGCCCAGTACACCCTAGACGCGCGCCTA CACGCGGTGTTCGAGCAATCGGGCGCGTCGGGCCGCAGCTTCGACTACTCCCAATCGCTG CGCGCGCCGCCCACGCCGTCCTCCGAGCAGCAGATCGCCGCCTACCTCTCCCGCATCCAG CGCGGCGGCCACATCCAGCCCTTCGGCTGCACGCTCGCCGTCGCCGACGACTCCTCCTTC CGCCTCCTCGCCTTCTCCGAGAACTCCCCCGACCTGCTCGACCTGTCGCCTCACCACTCC GTTCCCTCGCTGGACTCCTCTGCGCCGCCCCACGTTTCCCTGGGTGCCGACGCGCGCCTC CTCTTCTCCCCCTCGTCCGCGGTCCTCCTAGAGCGCGCCTTCGCCGCGCGCGAGATCTCG CTGCTCAACCCGATATGGATCCACTCCAGGGTCTCCTCCAAGCCGTTCTACGCCATCCTC CACCGCATCGACGTCGGCGTCGTCATCGACCTCGAGCCCGCCCGCACCGAGGACCCCGCT CTCTCCATCGCCGGTGCAGTCCAGTCCCAGAAACTGGCGGTCCGCGCCATCTCCCGCCTC CAGGCGCTACCCGGCGGGGACGTCAAGCTTCTCTGCGACACAGTCGTGGAGCATGTTCGC GAGCTCACGGGTTATGACCGTGTCATGGTGTACAGGTTCCATGAAGACGAGCACGGGGAA GTTGTCGCCGAGAGCCGGCGCGACAACCTTGAGCCTTACCTCGGATTGCATTATCCCGCC ACAGATATCCCCCAGGCGTCGCGCTTCCTGTTCCGGCAGAACCGCGTGCGAATGATTGCC GATTGCCATGCCACCCCGGTGAGAGTTATTCAAGATCCTGGGCTGTCGCAGCCTCTGTGT TTGGTAGGCTCCACGCTACGCGCTCCACACGGGTGTCATGCACAGTACATGGCGAACATG GGGTCAATTGCGTCGCTTGTTATGGCAGTCATCATTAGCAGTGGCGGTGACGATGAGCAA ACAGGTCGGGGTGGCATCTCGTCGGCAATGAAGTTGTGGGGGTTAGTGGTGTGCCACCAT ACATCACCACGGTGTATCCCTTTTCCATTGAGGTATGCTTGCGAGTTTCTCATGCAGGCA TTTGGGTTGCAGCTCAACATGGAGTTGCAGCTTGCGCACCAGCTGTCAGAGAAGCACATT CTGCGAACTCAGACGCTATTGTGTGACATGCTACTACGAGATTCACCAACTGGCATCGTC ACGCAGAGCCCCAGCATCATGGACCTTGTGAAGTGCGACGGGGCTGCACTGTATTATCAT GGGAAATACTATCCATTGGGTGTCACTCCCACTGAGTCTCAGATTAAGGATATCATCGAG TGGTTGACGGTGTTTCATGGGGACTCAACAGGGCTCAGCACAGATAGCCTGGCTGATGCA GGCTACCTTGGTGCTGCTGCACTAGGGGAGGCTGTGTGTGGAATGGCGGTGGCTTATATT ACACCGAGTGATTACTTGTTTTGGTTTCGGTCACACACAGCTAAAGAGATCAAATGGGGT GGCGCAAAGCATCACCCTGAGGATAAGGATGATGGTCAGAGGATGCACCCACGGTCGTCA TTCAAGGCATTTCTTGAAGTGGTTAAAAGCAGAAGCCTGCCATGGGAGAATGCAGAAATG GACGCAATACATTCCTTGCAGCTCATATTGCGTGACTCCTTCAGGGATGCTGCAGAGGGC ACCAACAACTCAAAAGCCATTGTCAATGGACAAGTTCAGCTTCGGGAGCTAGAATTGCGG GGGATAAATGAGCTTAGTTCCGTAGCAAGAGAGATGGTTCGGTTGATAGAGACAGCAACA GTACCCATATTTGCAGTAGATACTGATGGGTGTATAAATGGTTGGAATGCAAAGATTGCT GAGTTGACAGGGCTTTCAGTTGAGGAGGCAATGGGCAAATCTCTGGTAAATGATCTTATC TTCAAGGAATCTGAGGCGACAGTTGAAAAACTACTCTCACGAGCTTTAAGAGGTGAGGAA GACAAAAATGTGGAGATAAAGTTGAAGACATTTGGGTCAGAGCAATCTAAGGGACCAATA TTTGTTGTTGTCAATGCTTGTTCTAGTAGAGATTACACACAAAATATTGTTGGTGTCTGT TTTGTTGGACAAGATGTCACAGGACAAAAGGTGGTCATGGATAAATTTGTTAACATACAA GGGGACTACAAAGCTATTGTACACAATCCTAATCCTCTGATACCACCAATTTTTGCATCA GATGAGAACACTTCTTGTTCAGAATGGAATACAGCCATGGAAAAACTTACAGGATGGTCG AGAGGTGAAGTTGTTGGTAAGTTTCTTATTGGAGAGGTGTTTGGAAATTGTTGTCGACTC AAGGGCCCAGATGCATTGACAAAATTCATGGTTATTATTCACAACGCTATAGGAGGACAG GATTATGAGAAGTTCCCTTTTTCATTTTTTGACAAGAATGGAAAGTATGTGCAGGCCTTA TTGACCGCCAATACAAGGAGCAAAATGGATGGTAAATCCATTGGAGCCTTTTGTTTCCTG CAGATTGCAAGCACTGAAATACAGCAAGCCTTTGAGATTCAGAGACAACAAGAAAAGAAG TGTTACGCAAGGATGAAAGAATTGGCCTATATTTGCCAGGAGATAAAGAATCCTCTTAGT GGCATCCGATTTACCAACTCTCTGTTGCAGATGACTGATTTAAATGATGACCAGAGGCAG TTCCTTGAAACTAGCTCTGCTTGTGAGAAACAGATGTCCAAGATTGTTAAGGACGCCAGT CTCCAAAGTATCGAGGACGGCTCTTTGGTGCTTGAGCAAAGTGAGTTTTCTCTTGGAGAC GTTATGAATGCTGTTGTCAGCCAAGCAATGTTATTGTTGAGAGAGAGGGATTTACAACTT ATTCGGGACATCCCTGATGAAATCAAGGATGCGTCAGCGTATGGTGATCAATGTAGAATT CAACAAGTTTTGGCTGACTTCTTGCTAAGCATGGTGCGGTCTGCTCCATCCGAGAATGGT TGGGTAGAAATACAAGTCAGACCAAATGTAAAACAGAATTCTGATGGAACAAATACAGAA CTTTTCATATTCAGGTTTGCCTGCCCTGGTGAGGGCCTCCCTGCTGACGTCGTCCAGGAT ATGTTCAGCAATTCCCAATGGTCAACACAAGAAGGCGTAGGACTAAGCACATGCAGGAAG ATCCTCAAATTGATGGGTGGCGAGGTCCAATACATCAGAGAGTCAGAGCGGAGTTTCTTC CTCATCGTCCTCGAGCAGCCCCAACCTCGTCCAGCAGCTGGTAGAGAAATCGTCTGATAT GTTAAGATCCGTGCTGACCCCACCTAACTTTCTCGGCCGATTACATAACTTAGCCCCCTG ATAAGAGGGTGCCTAATTTACGAGAAGCCTGGAAACAAATCAAAGCTGCCATGGCAATTC AATGACTGAAGTGTTGTTGATGAGGCTGTTTTCAGTGCACCGCTATCCATGGCCATGCTG TGGTTTCAAGACCAGAGTTGGCGGATAGTTACGTACACAGGCGGCAAATGTGTCTCTTAG CCGCTGTTTAAGTGCACCGCTGTAAGTTTGGGTGTCCATGTCCATGCTGTGGTTTCAAGA TCAGAGTCCATGGCGGATAGTTATGTACACAAGCGACAAACGTGGTTCTTAGCTTAGGTT CATGACCAGTTCCACGTAGTACATATAGCTTATATGTATATATACAATCTATTTTTTACT ATGCATAAGGAGTTGTTTCAGCTTACACGGTTGTATGTTATAGTCCTTTCTAGGTCTACT ACATCCTAATCTAGATCTGGTTCCTCTGGAATGTTGGCACCACCGCTCTGTATTTTGCGG CGAAGGTTTGAGTTTGGCCTACCTCGGTTTATTTCATTCTCAGACCTTAATGTAAAAGCT TTGACAGTTGACACTGGGTGTGTCCTTTGTAGAGAAAGAAAACCTTTTCTTT