Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028827_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:1:47792603:47800509:1 gene:Zm00001d028827 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exonuclease DPD1 chloroplastic/mitochondrial
Sequence

ATGTCTTTGTCTTCTATTTGCTGTGCGAAGTTCCATCTACTAAGGAACTCTATAGGAGAC
ACTTGCAGTGTCAGATGGCTTAAATACCATAGCAGATTGATATATGAAACTTTCCTCTCA
AGCAGAATACATCAAAGTAGGCCTCCTAGTACAACAGTGCTAGCAAGAAGCACAAGAAAA
GGAAGTAAGCAGTCATTTAGCAATGGCCGCCATTTGCACAGTAAATCGGTTGAATCATCA
ATTGAAGTGTTCAAGCAGTCAGAGCTTGAGCAGCTTAAATCACTTCATTGCTACAATGTT
GAGGAAGAGTTTTCTGAAGTCAAGACCGAATGGCCTGCAACTATCCTTGTTTTTGATATT
GAAACTACTGGCTTCTCACGTCGTGATGACAGAATTATTGAGTTTGCTGTCCGTGATCTT
ATGGGGGGAAAGAATAGCACTTTTCAGACACTCATAAATCCTGAGAAAGATGTGAAAAAT
ACATATGTTCATGGTATTAACAACAGTATGCTCTGCAGGCCTGATGTTCCAAGATTTGGA
GAGATTATTCCCATTCTGCTACAATATGTGTGGAGTCGTCAAATGGACGGTAAACCAGTT
CTCTGGGTTGCTCATAATGGGCGTTCCTTTGACGTACCCTTTCTCATGTTTGAGTTTCGA
CGGTGTAAAGTAGAAATGCCTGGTGATTGGCTCTTTGTGGATACTCTTCCTATCGCAAAA
CAATTGGTCGATTCTAATGGGTCAAAACTCAGTTCTGTGTCATTGAAGTTCCTGAGGGAA
CGCTACAAAATCCCACTCACAGGGAGCGCGCATCGTGCCATGCAGGATGTGACAACCCTC
TCTTACGTGCTTCAGAAATTGACCTTTGAGCTGAAACTAACTGTTCCTCAGCTGCTCGAG
AAGTCTTTCCGAGCATCGGATCTTCCAGCTAATCGTCCTGCAAAGTGA

Peptide Sequence

PEP ID

Zm00001d028827_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:1:47792603:47800509:1 gene:Zm00001d028827 transcript:Zm00001d028827_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exonuclease DPD1 chloroplastic/mitochondrial
Sequence

MSLSSICCAKFHLLRNSIGDTCSVRWLKYHSRLIYETFLSSRIHQSRPPSTTVLARSTRK
GSKQSFSNGRHLHSKSVESSIEVFKQSELEQLKSLHCYNVEEEFSEVKTEWPATILVFDI
ETTGFSRRDDRIIEFAVRDLMGGKNSTFQTLINPEKDVKNTYVHGINNSMLCRPDVPRFG
EIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGDWLFVDTLPIAK
QLVDSNGSKLSSVSLKFLRERYKIPLTGSAHRAMQDVTTLSYVLQKLTFELKLTVPQLLE
KSFRASDLPANRPAK

Transcript Sequence

Transcript ID

Zm00001d028827_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:47792603:47800509:1 gene:Zm00001d028827 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exonuclease DPD1 chloroplastic/mitochondrial
Sequence

TCTCCTCCACGCCTCCCTCGCTCGCTCGCCCCCTCGTCCGGTCGCATCCCCGCAAGGAAT
GTCCCTTCCGTAGCGTCCCTTGCTTCTTCCCCACCCCATCCTGTATTAGTGCGTTCTCTG
CCGCTTTATTTTCCGGTTTCTTTGGGCTCTTTCGCCGCCTTGGATCTTGGTTGCCTCATC
CGGTTCATAGGTACCTTCTTTAACCTTTGCTGGGACTCCATTGATGCACTCTTTGGTTGT
TTTTCGGTGGAGCATTTCGTCGAACACAGGGGCGGAGGGCCCAGTATGGTCCAGAAATCA
AAGTAAAAAAAAGCCCTAGTGTCTTCGCATCGCGCTCCCGCACACAGACCGACCAGCCGC
AGCCCGTGGCGCACCTGCCTGCGCCCGCCGCCTCCGTCATCCACTCAACCTCGCCCCTCG
GCCACTGCCGCGCGGCGCCCGCCCGCCTGCCGCACCGGCCGAATCATCCGACGGCCCTTA
AGCTGAGGCGGTGTGGCCTAAGTAGCAGCGCGGCGGTCGCCCCGTGTCTCGTCCACTTCG
GCCCCGACAGGCTGTCCACGGTGGCGCGAACTGCCCCTCGCCGGTTCGGCCCCGCCCGCC
CGTAGCAGCTCACCAGAGAACTAGCCTCTCGTCGGCCTTCCCCAGGTCTGCGCGTGGCGC
GGCGCCGCAGCAAAGCTCCACGCGTGCGTGTCCGCCACCCGCCGTCTCGCCCGGGCCGCC
GTCGTTGCTCGTCGGTGAACGACGTCTCACTGGATTAGCATTGAAGGGTTATCCAATATT
CAGTGAAAACTAGCTACTGAAGAATAGGAGTAGCAATACCTTTGATGCCCCATAACCCCA
TTCATTAGTTTCTGCAATGTCTTTGTCTTCTATTTGCTGTGCGAAGTTCCATCTACTAAG
GAACTCTATAGGAGACACTTGCAGTGTCAGATGGCTTAAATACCATAGCAGATTGATATA
TGAAACTTTCCTCTCAAGCAGAATACATCAAAGTAGGCCTCCTAGTACAACAGTGCTAGC
AAGAAGCACAAGAAAAGGAAGTAAGCAGTCATTTAGCAATGGCCGCCATTTGCACAGTAA
ATCGGTTGAATCATCAATTGAAGTGTTCAAGCAGTCAGAGCTTGAGCAGCTTAAATCACT
TCATTGCTACAATGTTGAGGAAGAGTTTTCTGAAGTCAAGACCGAATGGCCTGCAACTAT
CCTTGTTTTTGATATTGAAACTACTGGCTTCTCACGTCGTGATGACAGAATTATTGAGTT
TGCTGTCCGTGATCTTATGGGGGGAAAGAATAGCACTTTTCAGACACTCATAAATCCTGA
GAAAGATGTGAAAAATACATATGTTCATGGTATTAACAACAGTATGCTCTGCAGGCCTGA
TGTTCCAAGATTTGGAGAGATTATTCCCATTCTGCTACAATATGTGTGGAGTCGTCAAAT
GGACGGTAAACCAGTTCTCTGGGTTGCTCATAATGGGCGTTCCTTTGACGTACCCTTTCT
CATGTTTGAGTTTCGACGGTGTAAAGTAGAAATGCCTGGTGATTGGCTCTTTGTGGATAC
TCTTCCTATCGCAAAACAATTGGTCGATTCTAATGGGTCAAAACTCAGTTCTGTGTCATT
GAAGTTCCTGAGGGAACGCTACAAAATCCCACTCACAGGGAGCGCGCATCGTGCCATGCA
GGATGTGACAACCCTCTCTTACGTGCTTCAGAAATTGACCTTTGAGCTGAAACTAACTGT
TCCTCAGCTGCTCGAGAAGTCTTTCCGAGCATCGGATCTTCCAGCTAATCGTCCTGCAAA
GTGACTGTATCTGCCTCACCTGAATATCGCCTGAAGCACTAAATTATTATCACCGCCGTT
TTCGAATATTTGTCGTCTGCAAGTTTATTTTTGAACTAAAACACGACAAAAAAAGAGGGA
GTACATTGTTGTTGTATTATTACAGAGATGTTATTTGGAGATCCCAGCTCTGATTTCTTC
TATGTTCTTTCTAACAACCTAATAAAGCCAGCCTGATTGCCACTGATACATCAGTAGCAC
AGTAATCCGTATTACTGATACTCTGACATTGTAGGCTTGTATACATTACTAAATCATCAA
TTCAACATATATTTACTTGACTGCGAACTTATGCGTAGGGATGGCAATGGGTACGAGTAT
GGGTAAATAGTCGCAGATTTATCTATTGGATATGAGTATGGTAGAATTAGGTAGGTTATG
GATATAATAAAGTATGATTATGGATATAATAAAGTATCCGCGAATTTTTTTCGCGGTCCA
TACCCGT