Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d028818_T038
CDS Infomation	cds chromosome:B73_RefGen_v4:1:47578968:47589476:1 gene:Zm00001d028818 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:defective kernel1 description:Calpain-type cysteine protease DEK1
Sequence	ATGAATCCACCATTTGTTGGGGCTGGCGTTTCTGCTACTACTCTTGTAATTGCTTTCAGT TTTGCTGTTTCTCGACCATGCCTGACTCTTAAGATGATGGAGGATGCAGTTCATTTTCTC AGCAAGGATACAGTTGTGCAAGCGATGTCACGGTCTGCTAATAAAACTAGAAATGCTATA TCTGGGACTTACTCAGCACCTCAGAGGTCCGCAAGTTCTGCTGCTCTTTTGGTTGGAGAT CCTGCTCTTACATTGGACAGGGCTGGGAACTTTGTGCTTCCTAGGGCTGATGTTATGAAA CTGAGAGATCGTTTGAGAAATGAAGAAATTGCTGCAGGATCTTTCTTATGTGGAGTAAAA GATTGTTTACTAATTTGCCCCCAGTCCCTGTCAAACATAGATTATCGGAGGAATATGTGT GCCCATGCACGTATTTTGGCTTTGGAAGAAGCAATTGATACAGAATGGGTGTATATGTGG GACAAATTTGGTGGTTATTTACTTCTGTTGCTTGGATTGACTGCCAAAGCTGAACAAATA CAGGATGAAGTTCGTCTAAGACTCTTTTTGGATAGCATAGGCCTTTCCGATTTGAGTGCC AAAGAAATTAAGAAATGGATGCCTGAAGATCGGAGGCAATTTGAGCTTATTCAAGAAAGC TACATAAGGGAAAAAGAAATGGAAGAGGAGGCTTTGATGCAAAGACGAGAGGAAGAAGGG AAGGGAAGAGAAAGGAGGAGGGCATTGCTAGAGAGAGAGGAGCGAAAATGGAAGGAGCTC GAAATATCATTGCTTTCTTCCATTCCAAATACTGGAAGCAGGGATGCTGCAGCTATGGCA GCAGCTGTCAGAGCTGTTGGAGGTGATTCTGCCCTGGAAGATTCTTTTGCAAGAGATAGG GTCTCTTCAATAGCCAATCACATACGAAAGGCACAATTGGCTCGGCGAGCAGAACAGACT GGTATTCCAGGCACTATATGCATACTCGATGATGAACCGAGGAGTACTGGTCGTCATTGT GGAGAACTTGACTTGTGCCTCTGTCAAAGTCAAAAGGTTACTTTGTCTATTGCTGTCATG GTTCAGCCTGTATCTGGCCCAGTGTGTCTTTTTGGAAGTGAATTCCAAAAGGTTTGTTGG GAAATCTTAGTGGCAGGATCAGAACAGGGTATGGAAGCTGGACAAGTTGGTCTTCGATTA GTAACTAAGGGTGAAAGGATGACTACTGTTGCTAAAGAGTGGAATATTGGTGCGTCTAGT ATTGCAGATGGCAGGTGGCATCTTGTCACTGTAACTTTAGATGCCGACCTAGGTGAAGCA ACTTCTTTCATTGATGGAGTTTATGATGGATATCAGAATGGGTTGCCGTTGCCAACAGAT AACGGTATTTGGGAACCTGGAACTGATATTTGGGTTGGTGCTAGGCCACCCATGGACTTA GATGCCTTTGGTAGGTCAGATAGCGAAGGTTCTGACTCAAAGATGCAGATCATGGATGCT TTTCTATGGGGAAGATGTCTCAGTGAAGATGAGGTTACTGTTTTACATACTGCCATGTCT CCTGCTGAGTATGGATTTTTTGACCTTGCACCCGGCGATGCTTGGCATGGAAGTTATTCT GCAAGGGTGGATGACTGGGAAAGCGAAGAAGCTTATGAGCTTTATGATCAAGGGGATGTC GAATGGGATGGACAGTACTCAAGTGGTAGGAAACGTCCGGTACATGATGCTGTAGCTATT GACCTTGACTCCTTTGCTAGGAGACCAAGAAAACCAAGGTTTGAGACACGTGATGAAGTC AACCAGCGTATGCTTTCTGTTGAAAGGGCTGTCAGGGATGCTCTTATCGCGAAAGGAGAG AGAAACTTCACTGATCAAGAGTTCCCTCCAGAGGATCGTTCTTTATTTGTAGATCCGATG AATCCACCTCTGAAACTGCAGGTTGTTTCTGAGTGGATGAGGCCTTCTGACATAGCAAAG GATATATCTATCAGTTGTCAGCCTTGCTTGTTTTCGGGTTCTGTGAATTCCTCAGATGTG TGTCAGGGTCGGTTGGGAGACTGTTGGTTCCTAAGTGCAGTCGCAGTTTTAACTGAGATG TCTCGGATATCAGAAGTTATAATCACTCCCGAGTACAATGATGAAGGGATTTATACAGTC AGATTCTGTATTCAGGGTGAGTGGGTGGCCGTGGTTGTTGATGATTGGATTCCTTGCGAG TCTCCGGGGAAACCAGCATTTGCTACTAGTAGAAAGCAAAACGAGCTTTGGGTATCCATT CTTGAGAAGGCTTATGCAAAACTTCATGGCTCTTATGAGGCATTGGAAGGTGGGCTTGTT CAAGATGCTCTAGTCGATCTCACAGGAGGAGCTGGTGAAGAGATTGATATGCGAAGTCCT CAAGCCCAACTTGATCTTGCTAGTGGAAGATTGTGGTCGCAGTTGTTGCATTTCAAACAA GAAGGTTTTCTTCTTGGTGCTGGAAGTCCTTCTGGATCTGATGCTCACATCTCATCAAGT GGCATTGTTCAGGGACATGCGTACTCAATTTTGCAGGTAAGAGAAGTTGATGGCCACAAA CTCATCCAAATCAGAAATCCATGGGCAAATGAAGTTGAATGGAATGGACCATGGTCAGAC TCGTCACCAGAGTGGACGGAACGGATGAAGCATAAGCTCATGCATGTTCCACAGTCGAAG AATGGGGTATTCTGGATGTCTTGGCAAGATTTTCAGATTCACTTTCGGTCAATATATGTT TGTCGTGTTTATCCACCTGAGATGCGTTACTCTGTCCATGGGCAATGGCGTGGCTACAAT GCAGGTGGTTGCCAAGATTATGACTCGTGGCACCAAAATCCACAGTATCGACTTAGAGTA ACAGGACGTGATGCACTATACCCTGTTCACGTTTTTATTACCCTTACTCAGGGTGTTGGT TTCTCTAGAAAGACGAATGGTTTTCGGAACTACCAATCTAGCCATGATTCTTCAATGTTT TACATTGGAATGAGGATACTCAAGACACAGGGCTGCCGTGCTGCTTACAATATCTACATG CATGAAAGCGCTGGTGGAACAGATTACGTTAACTCGAGGGAGATATCATGCGAACTGGTC TTGGATCCTTATCCCAAAGGGTACACAATTGTGCCAACTACCATCCACCCTGGGGAGGAA GCACCTTTTGTTTTGTCAGTTTTTTCAAAAGCATCAATCAGACTAGAGGCTGTTTAG

Peptide Sequence

PEP ID	Zm00001d028818_P038
PEP Infomation	pep chromosome:B73_RefGen_v4:1:47578968:47589476:1 gene:Zm00001d028818 transcript:Zm00001d028818_T038 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:defective kernel1 description:Calpain-type cysteine protease DEK1
Sequence	MNPPFVGAGVSATTLVIAFSFAVSRPCLTLKMMEDAVHFLSKDTVVQAMSRSANKTRNAI SGTYSAPQRSASSAALLVGDPALTLDRAGNFVLPRADVMKLRDRLRNEEIAAGSFLCGVK DCLLICPQSLSNIDYRRNMCAHARILALEEAIDTEWVYMWDKFGGYLLLLLGLTAKAEQI QDEVRLRLFLDSIGLSDLSAKEIKKWMPEDRRQFELIQESYIREKEMEEEALMQRREEEG KGRERRRALLEREERKWKELEISLLSSIPNTGSRDAAAMAAAVRAVGGDSALEDSFARDR VSSIANHIRKAQLARRAEQTGIPGTICILDDEPRSTGRHCGELDLCLCQSQKVTLSIAVM VQPVSGPVCLFGSEFQKVCWEILVAGSEQGMEAGQVGLRLVTKGERMTTVAKEWNIGASS IADGRWHLVTVTLDADLGEATSFIDGVYDGYQNGLPLPTDNGIWEPGTDIWVGARPPMDL DAFGRSDSEGSDSKMQIMDAFLWGRCLSEDEVTVLHTAMSPAEYGFFDLAPGDAWHGSYS ARVDDWESEEAYELYDQGDVEWDGQYSSGRKRPVHDAVAIDLDSFARRPRKPRFETRDEV NQRMLSVERAVRDALIAKGERNFTDQEFPPEDRSLFVDPMNPPLKLQVVSEWMRPSDIAK DISISCQPCLFSGSVNSSDVCQGRLGDCWFLSAVAVLTEMSRISEVIITPEYNDEGIYTV RFCIQGEWVAVVVDDWIPCESPGKPAFATSRKQNELWVSILEKAYAKLHGSYEALEGGLV QDALVDLTGGAGEEIDMRSPQAQLDLASGRLWSQLLHFKQEGFLLGAGSPSGSDAHISSS GIVQGHAYSILQVREVDGHKLIQIRNPWANEVEWNGPWSDSSPEWTERMKHKLMHVPQSK NGVFWMSWQDFQIHFRSIYVCRVYPPEMRYSVHGQWRGYNAGGCQDYDSWHQNPQYRLRV TGRDALYPVHVFITLTQGVGFSRKTNGFRNYQSSHDSSMFYIGMRILKTQGCRAAYNIYM HESAGGTDYVNSREISCELVLDPYPKGYTIVPTTIHPGEEAPFVLSVFSKASIRLEAV

Transcript Sequence

Transcript ID	Zm00001d028818_T038
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:47578968:47589476:1 gene:Zm00001d028818 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:defective kernel1 description:Calpain-type cysteine protease DEK1
Sequence	GGAAAGCCTTTTGTTGGAGCATCTATAGGTTATTTCTCATTTATATTTCTTCTCACTGGA AGGGCTTTGACTGTCCTTCTATCACCGCCAATCGTAGTGTATTCGCCAAGAGTATTGCCT GTATACGTTTATGATGCTCATGCAGACTCTGCTAAAAATGTTAGCTATGCCTTTCTTATT CTGTATGGGATTGCATTAGCAACTGAAGTTTGGGGTGTTATTGCTAGTCTAATAATGAAT CCACCATTTGTTGGGGCTGGCGTTTCTGCTACTACTCTTGTAATTGCTTTCAGTTTTGCT GTTTCTCGACCATGCCTGACTCTTAAGATGATGGAGGATGCAGTTCATTTTCTCAGCAAG GATACAGTTGTGCAAGCGATGTCACGGTCTGCTAATAAAACTAGAAATGCTATATCTGGG ACTTACTCAGCACCTCAGAGGTCCGCAAGTTCTGCTGCTCTTTTGGTTGGAGATCCTGCT CTTACATTGGACAGGGCTGGGAACTTTGTGCTTCCTAGGGCTGATGTTATGAAACTGAGA GATCGTTTGAGAAATGAAGAAATTGCTGCAGGATCTTTCTTATGTGGAGTAAAAGATTGT TTACTAATTTGCCCCCAGTCCCTGTCAAACATAGATTATCGGAGGAATATGTGTGCCCAT GCACGTATTTTGGCTTTGGAAGAAGCAATTGATACAGAATGGGTGTATATGTGGGACAAA TTTGGTGGTTATTTACTTCTGTTGCTTGGATTGACTGCCAAAGCTGAACAAATACAGGAT GAAGTTCGTCTAAGACTCTTTTTGGATAGCATAGGCCTTTCCGATTTGAGTGCCAAAGAA ATTAAGAAATGGATGCCTGAAGATCGGAGGCAATTTGAGCTTATTCAAGAAAGCTACATA AGGGAAAAAGAAATGGAAGAGGAGGCTTTGATGCAAAGACGAGAGGAAGAAGGGAAGGGA AGAGAAAGGAGGAGGGCATTGCTAGAGAGAGAGGAGCGAAAATGGAAGGAGCTCGAAATA TCATTGCTTTCTTCCATTCCAAATACTGGAAGCAGGGATGCTGCAGCTATGGCAGCAGCT GTCAGAGCTGTTGGAGGTGATTCTGCCCTGGAAGATTCTTTTGCAAGAGATAGGGTCTCT TCAATAGCCAATCACATACGAAAGGCACAATTGGCTCGGCGAGCAGAACAGACTGGTATT CCAGGCACTATATGCATACTCGATGATGAACCGAGGAGTACTGGTCGTCATTGTGGAGAA CTTGACTTGTGCCTCTGTCAAAGTCAAAAGGTTACTTTGTCTATTGCTGTCATGGTTCAG CCTGTATCTGGCCCAGTGTGTCTTTTTGGAAGTGAATTCCAAAAGGTTTGTTGGGAAATC TTAGTGGCAGGATCAGAACAGGGTATGGAAGCTGGACAAGTTGGTCTTCGATTAGTAACT AAGGGTGAAAGGATGACTACTGTTGCTAAAGAGTGGAATATTGGTGCGTCTAGTATTGCA GATGGCAGGTGGCATCTTGTCACTGTAACTTTAGATGCCGACCTAGGTGAAGCAACTTCT TTCATTGATGGAGTTTATGATGGATATCAGAATGGGTTGCCGTTGCCAACAGATAACGGT ATTTGGGAACCTGGAACTGATATTTGGGTTGGTGCTAGGCCACCCATGGACTTAGATGCC TTTGGTAGGTCAGATAGCGAAGGTTCTGACTCAAAGATGCAGATCATGGATGCTTTTCTA TGGGGAAGATGTCTCAGTGAAGATGAGGTTACTGTTTTACATACTGCCATGTCTCCTGCT GAGTATGGATTTTTTGACCTTGCACCCGGCGATGCTTGGCATGGAAGTTATTCTGCAAGG GTGGATGACTGGGAAAGCGAAGAAGCTTATGAGCTTTATGATCAAGGGGATGTCGAATGG GATGGACAGTACTCAAGTGGTAGGAAACGTCCGGTACATGATGCTGTAGCTATTGACCTT GACTCCTTTGCTAGGAGACCAAGAAAACCAAGGTTTGAGACACGTGATGAAGTCAACCAG CGTATGCTTTCTGTTGAAAGGGCTGTCAGGGATGCTCTTATCGCGAAAGGAGAGAGAAAC TTCACTGATCAAGAGTTCCCTCCAGAGGATCGTTCTTTATTTGTAGATCCGATGAATCCA CCTCTGAAACTGCAGGTTGTTTCTGAGTGGATGAGGCCTTCTGACATAGCAAAGGATATA TCTATCAGTTGTCAGCCTTGCTTGTTTTCGGGTTCTGTGAATTCCTCAGATGTGTGTCAG GGTCGGTTGGGAGACTGTTGGTTCCTAAGTGCAGTCGCAGTTTTAACTGAGATGTCTCGG ATATCAGAAGTTATAATCACTCCCGAGTACAATGATGAAGGGATTTATACAGTCAGATTC TGTATTCAGGGTGAGTGGGTGGCCGTGGTTGTTGATGATTGGATTCCTTGCGAGTCTCCG GGGAAACCAGCATTTGCTACTAGTAGAAAGCAAAACGAGCTTTGGGTATCCATTCTTGAG AAGGCTTATGCAAAACTTCATGGCTCTTATGAGGCATTGGAAGGTGGGCTTGTTCAAGAT GCTCTAGTCGATCTCACAGGAGGAGCTGGTGAAGAGATTGATATGCGAAGTCCTCAAGCC CAACTTGATCTTGCTAGTGGAAGATTGTGGTCGCAGTTGTTGCATTTCAAACAAGAAGGT TTTCTTCTTGGTGCTGGAAGTCCTTCTGGATCTGATGCTCACATCTCATCAAGTGGCATT GTTCAGGGACATGCGTACTCAATTTTGCAGGTAAGAGAAGTTGATGGCCACAAACTCATC CAAATCAGAAATCCATGGGCAAATGAAGTTGAATGGAATGGACCATGGTCAGACTCGTCA CCAGAGTGGACGGAACGGATGAAGCATAAGCTCATGCATGTTCCACAGTCGAAGAATGGG GTATTCTGGATGTCTTGGCAAGATTTTCAGATTCACTTTCGGTCAATATATGTTTGTCGT GTTTATCCACCTGAGATGCGTTACTCTGTCCATGGGCAATGGCGTGGCTACAATGCAGGT GGTTGCCAAGATTATGACTCGTGGCACCAAAATCCACAGTATCGACTTAGAGTAACAGGA CGTGATGCACTATACCCTGTTCACGTTTTTATTACCCTTACTCAGGGTGTTGGTTTCTCT AGAAAGACGAATGGTTTTCGGAACTACCAATCTAGCCATGATTCTTCAATGTTTTACATT GGAATGAGGATACTCAAGACACAGGGCTGCCGTGCTGCTTACAATATCTACATGCATGAA AGCGCTGGTGGAACAGATTACGTTAACTCGAGGGAGATATCATGCGAACTGGTCTTGGAT CCTTATCCCAAAGGGTACACAATTGTGCCAACTACCATCCACCCTGGGGAGGAAGCACCT TTTGTTTTGTCAGTTTTTTCAAAAGCATCAATCAGACTAGAGGCTGTTTAGTTCAAGATT GAGATCCCATGTGTTTGATGGTAGCTGCGTCTGCTGGGCACCCGTGCACGCAGGATCCAG CTGTGGGTTCTCGGGAACTAGATAATGGGTATAGGAATTGCCTCCTGGACAACTTCAATC AATCTTGCTGCATGCAAGTACCTAAGTTCGGTTGCTTGTTGCAGATCTGACAAACGGCAA TGCTTCTTGTGCTGAAGGGAAAGGAGAGAAGGCATGATCCATGGTTCTTTGGTAGCTGCG CAAAGTGCAGGGTGAGAGGCTTGGTTCAATGTTTGTAGATAGCCGTGGTAACTGACCTGG TAGCCCATCCTATGTATAGGTGTCCCGTTTACCCTGTAAATGCTATAGAGTTAGGTTAGG TAGCCTGTCGTTCCTGTTAACGCATAGGGCTCTTATGCAGCTGTGAAATGTCTTGTTAGC AAGCTGCAGTTTTGCTGATTTGAGCGTGGAGTAGTCGGCCATAGCTGTTCCCATTGGTTT GCCCTGTATGTAATCGGAATCTGATGTCATTCAATGAACCTATTTTTTGGGTGC