Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028750_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:1:45286347:45290076:-1 gene:Zm00001d028750 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:asparagine synthetase3 description: asparagine synthetase3
Sequence

ATGTGTGGCATCTTAGCCGTGCTCGGTTGCTCCGACTGGTCTCAGGCAAAGAGGGCTCGC
ATCCTCGCCTGCTCCAGAAGGTTGAAGCACAGGGGCCCCGACTGGTCGGGCCTCTACCAG
CACGAGGGCAACTTCCTGGCGCAGCAGCGGCTCGCCGTCGTCTCCCCGCTGTCCGGCGAC
CAGCCGCTGTTCAACGAGGACCGCACCGTCGTGGTGGTGGCCAATGGAGAGATCTACAAC
CACAAGAACGTCCGGAAGCAGTTCACCGGCACACACAACTTCAGCACGGGCAGTGACTGC
GAGGTCATCATCCCCCTGTACGAGAAGTACGGCGAGAACTTCGTGGACATGCTGGACGGG
GTGTTCGCGTTCGTGCTCTACGACACCCGCGACAGGACCTACGTGGCGGCGCGCGACGCC
ATCGGCGTCAACCCGCTCTACATCGGCTGGGGCAGTGACGGTTCCGTCTGGATCGCGTCC
GGCGGCGGGTTCCGGCGGTGGTACACCCCGCACTGGTTCCAGGAGCAGGTGCCCCGGATG
CCGTACCAGCCGCTCGTCCTCAGAGAGGCCTTCGAGAAGGCGGTCATCAAGAGGCTCATG
ACTGACGTCCCGTTCGGGGTCCTCCTCTCCGGCGGCCTCGACTCCTCGCTCGTCGCCTCC
GTCACCAAGCGCCACCTCGTCGAGACCGAGGCCGCCGAGAAGTTCGGCACCGAGCTCCAC
TCCTTTGTCGTCGGCCTCGAGGGCTCTCCTGACCTGAAGGCCGCACGAGAGGTCGCTGAC
TACCTTGGAACCATCCATCACGAGTTCCACTTCACCGTACAGGACGGCATCGACGCGATC
GAGGAGGTGATCTACCACGACGAGACGTACGACGTGACGACGATCCGGGCCAGCACGCCC
ATGTTCCTGATGGCTCGCAAGATCAAGTCGCTGGGCGTGAAGATGGTGCTGTCCGGGGAG
GGCTCCGACGAGCTCCTGGGCGGCTACCTCTACTTCCACTTCGCCCCCAACAAGGAGGAG
TTCCACAGGGAGACCTGCCGCAAGGTGAAGGCCCTGCACCAGTACGACTGCCTGCGCGCC
AACAAGGCCACGTCGGCGTGGGGCCTGGAGGTCCGCGTGCCGTTCCTCGACAAGGAGTTC
ATCAACGTCGCGATGGGCATGGACCCCGAATGGAAAATGTACGACAAGAACCTGGGCCGC
ATCGAGAAGTGGGTCATGAGGAAGGCGTTCGACGACGACGAGCACCCTTACCTGCCCAAG
CATATTCTCTACAGGCAGAAAGAACAGTTCAGTGACGGCGTTGGCTACAACTGGATCGAT
GGCCTCAAATCCTTCACTGAACAGCAGGTGACGGATGAGATGATGAACAACGCCGCCCAG
ATGTTCCCCTACAACACGCCCGTCAACAAGGAGGCCTACTACTACCGGATGATATTCGAG
AGGCTCTTCCCTCAGGACTCGGCGAGGGAGACGGTGCCGTGGGGCCCGAGCATCGCCTGC
AGCACGCCCGCGGCCATCGAGTGGGTGGAGCAGTGGAAGGCCTCCAACGACCCCTCCGGC
CGCTTCATCTCCTCCCACGACTCCGCCGCCACCGACCACACCGGCGGTAAGCCGGCGGTG
GCCAACGGCGGCGGCCACGGCGCCGCGAACGGCACGGTCAACGGCAAGGACGTCGCAGTC
GCGATCGCGGTCTGA

Peptide Sequence

PEP ID

Zm00001d028750_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:1:45286347:45290076:-1 gene:Zm00001d028750 transcript:Zm00001d028750_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:asparagine synthetase3 description: asparagine synthetase3
Sequence

MCGILAVLGCSDWSQAKRARILACSRRLKHRGPDWSGLYQHEGNFLAQQRLAVVSPLSGD
QPLFNEDRTVVVVANGEIYNHKNVRKQFTGTHNFSTGSDCEVIIPLYEKYGENFVDMLDG
VFAFVLYDTRDRTYVAARDAIGVNPLYIGWGSDGSVWIASGGGFRRWYTPHWFQEQVPRM
PYQPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASVTKRHLVETEAAEKFGTELH
SFVVGLEGSPDLKAAREVADYLGTIHHEFHFTVQDGIDAIEEVIYHDETYDVTTIRASTP
MFLMARKIKSLGVKMVLSGEGSDELLGGYLYFHFAPNKEEFHRETCRKVKALHQYDCLRA
NKATSAWGLEVRVPFLDKEFINVAMGMDPEWKMYDKNLGRIEKWVMRKAFDDDEHPYLPK
HILYRQKEQFSDGVGYNWIDGLKSFTEQQVTDEMMNNAAQMFPYNTPVNKEAYYYRMIFE
RLFPQDSARETVPWGPSIACSTPAAIEWVEQWKASNDPSGRFISSHDSAATDHTGGKPAV
ANGGGHGAANGTVNGKDVAVAIAV

Transcript Sequence

Transcript ID

Zm00001d028750_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:45286347:45290076:-1 gene:Zm00001d028750 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:asparagine synthetase3 description: asparagine synthetase3
Sequence

ATCCCAGCACGTCTCGTCTCCCTCCCAAAAAAAAAAAAAAAACTGCTCGGTTGCTGCTCC
TGCTCCGCCGCGCCGGCATCATGTGTGGCATCTTAGCCGTGCTCGGTTGCTCCGACTGGT
CTCAGGCAAAGAGGGCTCGCATCCTCGCCTGCTCCAGAAGGTTGAAGCACAGGGGCCCCG
ACTGGTCGGGCCTCTACCAGCACGAGGGCAACTTCCTGGCGCAGCAGCGGCTCGCCGTCG
TCTCCCCGCTGTCCGGCGACCAGCCGCTGTTCAACGAGGACCGCACCGTCGTGGTGGTGG
CCAATGGAGAGATCTACAACCACAAGAACGTCCGGAAGCAGTTCACCGGCACACACAACT
TCAGCACGGGCAGTGACTGCGAGGTCATCATCCCCCTGTACGAGAAGTACGGCGAGAACT
TCGTGGACATGCTGGACGGGGTGTTCGCGTTCGTGCTCTACGACACCCGCGACAGGACCT
ACGTGGCGGCGCGCGACGCCATCGGCGTCAACCCGCTCTACATCGGCTGGGGCAGTGACG
GTTCCGTCTGGATCGCGTCCGGCGGCGGGTTCCGGCGGTGGTACACCCCGCACTGGTTCC
AGGAGCAGGTGCCCCGGATGCCGTACCAGCCGCTCGTCCTCAGAGAGGCCTTCGAGAAGG
CGGTCATCAAGAGGCTCATGACTGACGTCCCGTTCGGGGTCCTCCTCTCCGGCGGCCTCG
ACTCCTCGCTCGTCGCCTCCGTCACCAAGCGCCACCTCGTCGAGACCGAGGCCGCCGAGA
AGTTCGGCACCGAGCTCCACTCCTTTGTCGTCGGCCTCGAGGGCTCTCCTGACCTGAAGG
CCGCACGAGAGGTCGCTGACTACCTTGGAACCATCCATCACGAGTTCCACTTCACCGTAC
AGGACGGCATCGACGCGATCGAGGAGGTGATCTACCACGACGAGACGTACGACGTGACGA
CGATCCGGGCCAGCACGCCCATGTTCCTGATGGCTCGCAAGATCAAGTCGCTGGGCGTGA
AGATGGTGCTGTCCGGGGAGGGCTCCGACGAGCTCCTGGGCGGCTACCTCTACTTCCACT
TCGCCCCCAACAAGGAGGAGTTCCACAGGGAGACCTGCCGCAAGGTGAAGGCCCTGCACC
AGTACGACTGCCTGCGCGCCAACAAGGCCACGTCGGCGTGGGGCCTGGAGGTCCGCGTGC
CGTTCCTCGACAAGGAGTTCATCAACGTCGCGATGGGCATGGACCCCGAATGGAAAATGT
ACGACAAGAACCTGGGCCGCATCGAGAAGTGGGTCATGAGGAAGGCGTTCGACGACGACG
AGCACCCTTACCTGCCCAAGCATATTCTCTACAGGCAGAAAGAACAGTTCAGTGACGGCG
TTGGCTACAACTGGATCGATGGCCTCAAATCCTTCACTGAACAGCAGGTGACGGATGAGA
TGATGAACAACGCCGCCCAGATGTTCCCCTACAACACGCCCGTCAACAAGGAGGCCTACT
ACTACCGGATGATATTCGAGAGGCTCTTCCCTCAGGACTCGGCGAGGGAGACGGTGCCGT
GGGGCCCGAGCATCGCCTGCAGCACGCCCGCGGCCATCGAGTGGGTGGAGCAGTGGAAGG
CCTCCAACGACCCCTCCGGCCGCTTCATCTCCTCCCACGACTCCGCCGCCACCGACCACA
CCGGCGGTAAGCCGGCGGTGGCCAACGGCGGCGGCCACGGCGCCGCGAACGGCACGGTCA
ACGGCAAGGACGTCGCAGTCGCGATCGCGGTCTGACGAGAGTACGTGCTCGCGCACCTCC
CTGCTAGCTTCTACCGGGCTGCAGCCTGCAGCATGCACTGTGCGAGCACAGCCGATCAGC
GCCAATAAACTGGAGGATAAGAACGACTGGTAGGTGTGTGTGTGTGTCGTGCGTGCCCAC
CGGCCATATCCCGGTGCGGCAGCACGTGCTATTGTTACGTGTTGTACTGCCGCCAGCGTA
CGTGTCTGTGTGTCTCGATCATATCTGTACGTTTTTAGATTTAGAAGAAAAAAAAAAGGC
ATGTCCGTGTCTGTATGTCTGGATCATATCTGTACGTTCTTAGATTTAGAAGAAAGAAGA
AAAACATTATATAC