Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028699_T054
CDS Infomation

cds chromosome:B73_RefGen_v4:1:43568973:43581588:1 gene:Zm00001d028699 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ypt/Rab-GAP domain of gyp1p superfamily protein
Sequence

ATGGATAACTGGACCATGGTTTCTTTCAATTTTCATCAATATGCTTCCATGGGAAAGTGG
TCAGTACTTCGCATTTGGGATGTCATCCTTTTTGAAGGAAATCGCATAATGTTGTTCAGG
ACGACACTTGCTTTGCTGGATTTATATGGGCCTGCACTAGTGACCACAAAAGATGCCGGA
GATGCAATTACACTACTGCAGTCTCTTGCTGGATCTACATTTGACAGCAGCCAGCTTGTA
TTGACAGCTTGTATGGGTTTTCAATCAGTTAGAGAAATGGGATTGCAAGAGTTAAGGAAA
AAGTACAGGCCTGAAATTTTAACTGCAATGGAGGAAAGATCGAAAGACCGTGGCTCCTGG
AAAGATAAGAAGGGGTTAGCAACCAAACTTTATAGCTTTAAACATGATCCTTCATATGTG
TGCTCACCAGTTAAGTCCAAGGAAGGGCTAGATGGTTCAAAGGTGAATGGAGAGACTGGG
CCAGCAAATCTTGAGACCTACCTTAGTACTAGTTCTATACTGGATAATGATTTGGATCAG
GGTGTTGATCTTCAAGATCAGGTGTCATGGCTAAAGGTTGAACTATGCAAGCTGCTCGAG
GAGAAAAGATCAGCTGATCTCAGGAGTGAGGAATTGGAAACTGCTTTGATGGAGATGGTC
GAGCATGACAACAGACGTATGTTGAGTGCAAAGGTTGAGAAGCTTGAAACAGAGGCATAT
GAACTGCGCAAAGCTTTTTCAGACAAGCAAGAGCAAGAGCAAGTAATGCTTCAGATCTTG
TTAAGAATGGAGCAAGAACAGAAAGTGGCAGAAGATGCCCGCATAGCCGCTGAGCGAGAT
GCTGCTGAACAAAAACACGCTGCTCACTTGCTCCAGGAGAAGTATGAAGCAGCAATGACA
GCACTTTCACAAATGGAGAAGAGAGCTGTAATGGCAGAAACAATGCTGGAAGCTACAAAG
CAATACCAGGTTGGGCAGGTTAAAGCCAACCAATCTTTCACTTCAAGTTCACCTCGTGCA
GACCATGTTCCTGCGAAGATAAATCAAGAACCAAACCAAACTGCACCTATCAGGAGAATC
GGCCTGCTTTCTAGGGGACTTGGATGGCTTGACAAGGGCAAGGGAAGGCAGAATTCCAAT
GAAACATCTGGAGCCTAA

Peptide Sequence

PEP ID

Zm00001d028699_P054
PEP Infomation

pep chromosome:B73_RefGen_v4:1:43568973:43581588:1 gene:Zm00001d028699 transcript:Zm00001d028699_T054 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ypt/Rab-GAP domain of gyp1p superfamily protein
Sequence

MDNWTMVSFNFHQYASMGKWSVLRIWDVILFEGNRIMLFRTTLALLDLYGPALVTTKDAG
DAITLLQSLAGSTFDSSQLVLTACMGFQSVREMGLQELRKKYRPEILTAMEERSKDRGSW
KDKKGLATKLYSFKHDPSYVCSPVKSKEGLDGSKVNGETGPANLETYLSTSSILDNDLDQ
GVDLQDQVSWLKVELCKLLEEKRSADLRSEELETALMEMVEHDNRRMLSAKVEKLETEAY
ELRKAFSDKQEQEQVMLQILLRMEQEQKVAEDARIAAERDAAEQKHAAHLLQEKYEAAMT
ALSQMEKRAVMAETMLEATKQYQVGQVKANQSFTSSSPRADHVPAKINQEPNQTAPIRRI
GLLSRGLGWLDKGKGRQNSNETSGA

Transcript Sequence

Transcript ID

Zm00001d028699_T054
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:43568973:43581588:1 gene:Zm00001d028699 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ypt/Rab-GAP domain of gyp1p superfamily protein
Sequence

GGATCTTGTGGACCCAGTGGTCAACGAACAGGGAAGTGCACCCAGAAAAGTTACCCAGCC
TGAGAAATGGAAAGGACAGATAGAGAAGGTTGTTTTCTGCAACAGTTCGAATTTAGAGGA
AGCATGCCATGGTTGACAACCTCTAGTGTTTCTATACACTTGATTTCTGTTTCCATTACA
GGATTTGCCACGAACATTTCCAGGACACCCTGCATTAGATGAGGATGGGAGGAATGCTTT
GAGGCGGTTGTTAACCGCATATGCAAGGCATAATCCATCAGTTGGGTACTGCCAGGCCAT
GAACTTTTTTGCTGGGCTATTTTTGTTATTCATGCCTGAAGAAAATGCATTTTGGGCCTT
AGTAGGGGTTATTGATGATTATTTTGATGGATACTACACTGAAGAAATGATTGAATCTCA
GGTTGACCAACTCGTCCTTGAGGAGGTTGTACGAGAAAGGTTCCCTAAATTGGCCAAACA
TATGGAATTCTTGGGAGTTCAAGTGGGATGGATAACTGGACCATGGTTTCTTTCAATTTT
CATCAATATGCTTCCATGGGAAAGTGGTCAGTACTTCGCATTTGGGATGTCATCCTTTTT
GAAGGAAATCGCATAATGTTGTTCAGGACGACACTTGCTTTGCTGGATTTATATGGGCCT
GCACTAGTGACCACAAAAGATGCCGGAGATGCAATTACACTACTGCAGTCTCTTGCTGGA
TCTACATTTGACAGCAGCCAGCTTGTATTGACAGCTTGTATGGGTTTTCAATCAGTTAGA
GAAATGGGATTGCAAGAGTTAAGGAAAAAGTACAGGCCTGAAATTTTAACTGCAATGGAG
GAAAGATCGAAAGACCGTGGCTCCTGGAAAGATAAGAAGGGGTTAGCAACCAAACTTTAT
AGCTTTAAACATGATCCTTCATATGTGTGCTCACCAGTTAAGTCCAAGGAAGGGCTAGAT
GGTTCAAAGGTGAATGGAGAGACTGGGCCAGCAAATCTTGAGACCTACCTTAGTACTAGT
TCTATACTGGATAATGATTTGGATCAGGGTGTTGATCTTCAAGATCAGGTGTCATGGCTA
AAGGTTGAACTATGCAAGCTGCTCGAGGAGAAAAGATCAGCTGATCTCAGGAGTGAGGAA
TTGGAAACTGCTTTGATGGAGATGGTCGAGCATGACAACAGACGTATGTTGAGTGCAAAG
GTTGAGAAGCTTGAAACAGAGGCATATGAACTGCGCAAAGCTTTTTCAGACAAGCAAGAG
CAAGAGCAAGTAATGCTTCAGATCTTGTTAAGAATGGAGCAAGAACAGAAAGTGGCAGAA
GATGCCCGCATAGCCGCTGAGCGAGATGCTGCTGAACAAAAACACGCTGCTCACTTGCTC
CAGGAGAAGTATGAAGCAGCAATGACAGCACTTTCACAAATGGAGAAGAGAGCTGTAATG
GCAGAAACAATGCTGGAAGCTACAAAGCAATACCAGGTTGGGCAGGTTAAAGCCAACCAA
TCTTTCACTTCAAGTTCACCTCGTGCAGACCATGTTCCTGCGAAGATAAATCAAGAACCA
AACCAAACTGCACCTATCAGGAGAATCGGCCTGCTTTCTAGGGGACTTGGATGGCTTGAC
AAGGGCAAGGGAAGGCAGAATTCCAATGAAACATCTGGAGCCTAAACTCATCTAAAGTCC
AGGATGAAGTCATAGCTCCCAACAAGATCTGGATTGTTCATTAACGCTTGGATTGCTTGA
TCACCGTAAGAGTGTTGAAATCAGCATCGATACATGTTTTCTCGGGAAGATTCAGCTGGT
ATATTCCATGAAGTTTTGCAGGAAGTGTATCTTGTATCATATTGAGTTCAATTGTCAGAT
AAAGTTTTGTTGGTAGGTCAGAAAGGCTTCTGCAAGTCATCGGTGTAAATTTTCTTTTAT
TAGTTCCATTAAGATTGTCAATAGTTAGTGTTCCAAATAGGAGAAAGAAAAGAACGACTT
ACTACACACAAGAAAAATTTCTGTTAGATTAGTTACAGTATCATGGAGTTGTTCTGGAGA
AGAGCATGTTTTTTTTATCTCTTCAGAAATGTCAAAACCACCGAAGAGATTCTCTCTCTG
TATTTTTGTCTGATACGTGTGGCTCATACATTCTTCAGTCACAGTT