Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028687_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:43083284:43088852:-1 gene:Zm00001d028687 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calcium pump2 description: calcium pump2
Sequence

ATGGGTAAGGGCGGGCAGGACGAAGGCAAGCGGCGGGCCGGATCCGCCGCCTCCGATCCG
GACCCCGCCGCGCCGGTCTTCCCGGCGTGGGCGCGCACCCCAAGCGAGTGCCTCGCGGAG
CTAGGCGTCTCGGCGGACCGCGGGCTCAGCTCCGAGGAGGCGGCGGCGCGGCTGCAGCGG
TACGGGCCCAACGAACTCGAGCGGCACGCCCCGCCGTCGGTCTGGAAGCTCGTTCTCGAG
CAGTTTGATGACACGCTCGTGCGCATCCTGCTCCTGGCGGCCGTCGTCTCCTTCGTGCTC
GCGCTTTACGACGGCGCAGAAGGCGGCGAGGTGGGCGTCACCGCCTTCGTCGAGCCGCTC
GTCATCTTCCTTATCCTCATCGTCAACGCCGTCGTCGGCGTCTGGCAAGAGAGCAACGCC
GAGAAGGCGCTCGAGGCGCTCAAGGAGATCCAGTCGGAGCACGCAACCGTCAAGCGTCAT
GGGCGGTGGTCGCATGGCCTCCCCGCGCGCGACCTCGTCCCCGGGGACATCGTTGAGCTC
CGGGTCGGGGACAAGGTTCCCGCGGACATGCGCGTGCTCCAGCTCATCAGCTCGACCCTC
CGCGTCGAGCAGGGATCTCTCACCGGCGAGACCGCTTCTGTTAACAAGACCAGCCACAAG
ATCGAGTTGGAGGACACTGACATCCAGGGAAAGGAGTGCATGGTTTTTGCCGGCACCACT
GTTGTCAATGGCAGTGCTGTCTGTGTTGTGACGGGCACTGGCATGGCGACTGAAATTGGC
AAGATCCACGCCCAGATCCAGGAGGCATCTCAGGAGGAGGACGACACGCCACTTAAGAAG
AAGCTCAATGAGTTTGGTGAGGCGCTAACTGCCATAATTGGGGTGATCTGTGCCTTGGTC
TGGCTCATCAACTTGAAGTATTTCCTTTCCTGGGAGTATGTTGACGGGTGGCCTAGGAAT
TTCAAATTCTCATTTGAGAAGTGCACATATTACTTTGAGATTGCAGTGGCACTGGCCGTT
GCAGCAATTCCAGAGGGCTTGCCTGCTGTGATCACCACATGCTTGGCACTCGGCACAAGG
AAGATGGCACAGAAGAATGCCCTTGTGAGGAAGCTGCCGAGTGTGGAAACATTGGGTTGT
ACAACTGTGATTTGCTCTGATAAGACCGGAACTTTGACCACAAACCAGATGTCAGCAGTG
AAGCTTGTGGCAATTGGGAGGTGGCCTGATACTCTTAGGAGCTTTAAGGTTGATGGAACC
ACTTATGATCCAACTGATGGGAAGATACATGATTGGCCAAGCTTGAGCATGGATGAAAAT
CTCCAGATGATCGCAAAGATTGCTGCAGTTTGCAATGATGCAAGCATTGCCCACGCTGAG
CATCAGTATGTTGCTACTGGGATGCCCACAGAAGCTGCTCTGAAGGTTTTGGTTGAGAAA
ATGGGGCTTCCTGGTGGCTATACTCCATCTCTGGATTCATCTGATTTGCTAAGGTGCTGT
CAGTGGTGGAACAATGCTGCCAAGAGAGTAGCAACTCTGGAATTTGATCGCACCAGAAAG
TCAATGGGAGTTATTGTGAAAGTGGACTCTGGGAAGAACGTGCTGCTTGTCAAGGGTGCA
GTAGAGAATCTGCTAGAGAGATGTACCCACATTCAGTTGCTCGATGGATCTGTTGTGCTA
TTGGATGATGGTGCCAAGGCACTCATATTATCTACACTCCGTGAGATGTCTGCCAGTGCT
TTGCGCTGTTTGGGTTTTGCCTACAAGGATGAATTGTCAGAATTTGCAACATATGATGGT
GAAGATCATGCAGCTCACAAGTATCTGCTCGATCCATCATACTACTCTTCCATAGAGAGT
AATATGATCTTTTGTGGTTTTGTGGGTCTAAGGGATCCTCCCAGAGAAGAAGTCCACACA
GCAATTGAAGATTGCAGAGCTGCTGGAATACGTGTTATGGTGATAACAGGAGATAACAAA
GAAACAGCCGAGGCCATCTGCCATGAGATTGGGGTTTTTGGCCCTCATGAAGACATCAGT
TCAAAAAGCTTCACAGGGAAGGAATTCATGGCACTTTCTGATAAAAAGAAGCTCTTAAGA
CAACAGTGCGGCCTTCTCTTCTCCAGGGCAGAACCAAAACATAAGCAGGAGATAGTTAGA
CTGCTCAAAGAAGATGGTGAAGTGGTTGCAATGACTGGCGATGGGGTGAATGATGCACCA
GCTCTTAAACTGGCCGATATTGGAGTTGCAATGGGCATTACAGGGACTGAGGTTGCTAAA
GAAGCTTCAGATATGGTACTTGCAGATGATAACTTCAGTACTATAGTCGCAGCAGTTGGT
GAAGGGAGGTCTATTTACAACAACATGAAGGCTTTTATTAGATATATGATCTCCTCAAAC
ATCGGAGAAGTCGCGTCCATATTCTTGACATCGGCTTTGGGTATTCCAGAAGGTCTCATC
CCAGTGCAACTTCTATGGGTCAATCTTGTTACGGATGGCCCTCCAGCGACAGCTTTAGGG
TTCAACCCACCTGATAAAGACATCATGAAGAAACCTCCTCGGAGAAGTGATGACTCGTTG
ATCACGCCTTGGATCCTGTTTCGCTATATGGTTATTGGCCTTTATGTTGGGGTTGCCACA
GTGGGAATCTTCATCATCTGGTACACGCATGGCAGTTTCCTGGGAATTGACCTGGCTAGT
GATGGCCATACCCTTGTGTCGTACTCCCAGCTCTCAAACTGGGGGCAGTGCTCCTCATGG
GAGGGCTTCAAGGTGTCGCCATTCACTGCAGGAGCGAGGACATTCAGCTTTGATGCAAAT
CCATGCGATTACTTCCAGGGTGGCAAGATTAAAGCAACGACCCTCTCTTTGTCTGTCTTG
GTGGCAATTGAGATGTTCAACTCACTGAATGCCCTGTCAGAGGATGGCAGCCTCCTGAGC
ATGCCGCCATGGGTTAATCCATGGCTTCTTCTGGCCATGTCCGTTTCTTTTGGGCTGCAT
TTCTTGATCCTCTACGTGCCTTTCCTGGCTCAAGTGTTTGGGATTGTGCCCCTCAGTTTG
AACGAATGGCTCTTGGTGATAGCAGTGGCCTTACCAGTGGTGCTGATCGATGAGGTTCTC
AAATTTGTGGGGCGGTGCCTGACAGCTCGTGCCCGAAAACAATCAGGGAAGAGGAAGGCA
GAGTAG

Peptide Sequence

PEP ID

Zm00001d028687_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:43083284:43088852:-1 gene:Zm00001d028687 transcript:Zm00001d028687_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calcium pump2 description: calcium pump2
Sequence

MGKGGQDEGKRRAGSAASDPDPAAPVFPAWARTPSECLAELGVSADRGLSSEEAAARLQR
YGPNELERHAPPSVWKLVLEQFDDTLVRILLLAAVVSFVLALYDGAEGGEVGVTAFVEPL
VIFLILIVNAVVGVWQESNAEKALEALKEIQSEHATVKRHGRWSHGLPARDLVPGDIVEL
RVGDKVPADMRVLQLISSTLRVEQGSLTGETASVNKTSHKIELEDTDIQGKECMVFAGTT
VVNGSAVCVVTGTGMATEIGKIHAQIQEASQEEDDTPLKKKLNEFGEALTAIIGVICALV
WLINLKYFLSWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTR
KMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMSAVKLVAIGRWPDTLRSFKVDGT
TYDPTDGKIHDWPSLSMDENLQMIAKIAAVCNDASIAHAEHQYVATGMPTEAALKVLVEK
MGLPGGYTPSLDSSDLLRCCQWWNNAAKRVATLEFDRTRKSMGVIVKVDSGKNVLLVKGA
VENLLERCTHIQLLDGSVVLLDDGAKALILSTLREMSASALRCLGFAYKDELSEFATYDG
EDHAAHKYLLDPSYYSSIESNMIFCGFVGLRDPPREEVHTAIEDCRAAGIRVMVITGDNK
ETAEAICHEIGVFGPHEDISSKSFTGKEFMALSDKKKLLRQQCGLLFSRAEPKHKQEIVR
LLKEDGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDNFSTIVAAVG
EGRSIYNNMKAFIRYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALG
FNPPDKDIMKKPPRRSDDSLITPWILFRYMVIGLYVGVATVGIFIIWYTHGSFLGIDLAS
DGHTLVSYSQLSNWGQCSSWEGFKVSPFTAGARTFSFDANPCDYFQGGKIKATTLSLSVL
VAIEMFNSLNALSEDGSLLSMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSL
NEWLLVIAVALPVVLIDEVLKFVGRCLTARARKQSGKRKAE

Transcript Sequence

Transcript ID

Zm00001d028687_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:43083284:43088852:-1 gene:Zm00001d028687 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calcium pump2 description: calcium pump2
Sequence

ATGTATATATAGAGAAAAAAGGGGTAGGAGAGGAAAAGCTTCTCCCCCTCTCCATCTTGC
TTGTGCGCTGCAATCGCCATCGCCTCCTTGCCCATTCTCCGCGCCGCCGCCTCCTCCTCC
GCTCCCCTCCTTCTTCTAGGGTTTCTACTCCATGCGATCTCGCGGCCTTGGTGGCGCGGG
ACAGTAGGGACGCCCCCTCTCCATCGAATCTAGAGAGTCAGCGACCCAATGGGTAAGGGC
GGGCAGGACGAAGGCAAGCGGCGGGCCGGATCCGCCGCCTCCGATCCGGACCCCGCCGCG
CCGGTCTTCCCGGCGTGGGCGCGCACCCCAAGCGAGTGCCTCGCGGAGCTAGGCGTCTCG
GCGGACCGCGGGCTCAGCTCCGAGGAGGCGGCGGCGCGGCTGCAGCGGTACGGGCCCAAC
GAACTCGAGCGGCACGCCCCGCCGTCGGTCTGGAAGCTCGTTCTCGAGCAGTTTGATGAC
ACGCTCGTGCGCATCCTGCTCCTGGCGGCCGTCGTCTCCTTCGTGCTCGCGCTTTACGAC
GGCGCAGAAGGCGGCGAGGTGGGCGTCACCGCCTTCGTCGAGCCGCTCGTCATCTTCCTT
ATCCTCATCGTCAACGCCGTCGTCGGCGTCTGGCAAGAGAGCAACGCCGAGAAGGCGCTC
GAGGCGCTCAAGGAGATCCAGTCGGAGCACGCAACCGTCAAGCGTCATGGGCGGTGGTCG
CATGGCCTCCCCGCGCGCGACCTCGTCCCCGGGGACATCGTTGAGCTCCGGGTCGGGGAC
AAGGTTCCCGCGGACATGCGCGTGCTCCAGCTCATCAGCTCGACCCTCCGCGTCGAGCAG
GGATCTCTCACCGGCGAGACCGCTTCTGTTAACAAGACCAGCCACAAGATCGAGTTGGAG
GACACTGACATCCAGGGAAAGGAGTGCATGGTTTTTGCCGGCACCACTGTTGTCAATGGC
AGTGCTGTCTGTGTTGTGACGGGCACTGGCATGGCGACTGAAATTGGCAAGATCCACGCC
CAGATCCAGGAGGCATCTCAGGAGGAGGACGACACGCCACTTAAGAAGAAGCTCAATGAG
TTTGGTGAGGCGCTAACTGCCATAATTGGGGTGATCTGTGCCTTGGTCTGGCTCATCAAC
TTGAAGTATTTCCTTTCCTGGGAGTATGTTGACGGGTGGCCTAGGAATTTCAAATTCTCA
TTTGAGAAGTGCACATATTACTTTGAGATTGCAGTGGCACTGGCCGTTGCAGCAATTCCA
GAGGGCTTGCCTGCTGTGATCACCACATGCTTGGCACTCGGCACAAGGAAGATGGCACAG
AAGAATGCCCTTGTGAGGAAGCTGCCGAGTGTGGAAACATTGGGTTGTACAACTGTGATT
TGCTCTGATAAGACCGGAACTTTGACCACAAACCAGATGTCAGCAGTGAAGCTTGTGGCA
ATTGGGAGGTGGCCTGATACTCTTAGGAGCTTTAAGGTTGATGGAACCACTTATGATCCA
ACTGATGGGAAGATACATGATTGGCCAAGCTTGAGCATGGATGAAAATCTCCAGATGATC
GCAAAGATTGCTGCAGTTTGCAATGATGCAAGCATTGCCCACGCTGAGCATCAGTATGTT
GCTACTGGGATGCCCACAGAAGCTGCTCTGAAGGTTTTGGTTGAGAAAATGGGGCTTCCT
GGTGGCTATACTCCATCTCTGGATTCATCTGATTTGCTAAGGTGCTGTCAGTGGTGGAAC
AATGCTGCCAAGAGAGTAGCAACTCTGGAATTTGATCGCACCAGAAAGTCAATGGGAGTT
ATTGTGAAAGTGGACTCTGGGAAGAACGTGCTGCTTGTCAAGGGTGCAGTAGAGAATCTG
CTAGAGAGATGTACCCACATTCAGTTGCTCGATGGATCTGTTGTGCTATTGGATGATGGT
GCCAAGGCACTCATATTATCTACACTCCGTGAGATGTCTGCCAGTGCTTTGCGCTGTTTG
GGTTTTGCCTACAAGGATGAATTGTCAGAATTTGCAACATATGATGGTGAAGATCATGCA
GCTCACAAGTATCTGCTCGATCCATCATACTACTCTTCCATAGAGAGTAATATGATCTTT
TGTGGTTTTGTGGGTCTAAGGGATCCTCCCAGAGAAGAAGTCCACACAGCAATTGAAGAT
TGCAGAGCTGCTGGAATACGTGTTATGGTGATAACAGGAGATAACAAAGAAACAGCCGAG
GCCATCTGCCATGAGATTGGGGTTTTTGGCCCTCATGAAGACATCAGTTCAAAAAGCTTC
ACAGGGAAGGAATTCATGGCACTTTCTGATAAAAAGAAGCTCTTAAGACAACAGTGCGGC
CTTCTCTTCTCCAGGGCAGAACCAAAACATAAGCAGGAGATAGTTAGACTGCTCAAAGAA
GATGGTGAAGTGGTTGCAATGACTGGCGATGGGGTGAATGATGCACCAGCTCTTAAACTG
GCCGATATTGGAGTTGCAATGGGCATTACAGGGACTGAGGTTGCTAAAGAAGCTTCAGAT
ATGGTACTTGCAGATGATAACTTCAGTACTATAGTCGCAGCAGTTGGTGAAGGGAGGTCT
ATTTACAACAACATGAAGGCTTTTATTAGATATATGATCTCCTCAAACATCGGAGAAGTC
GCGTCCATATTCTTGACATCGGCTTTGGGTATTCCAGAAGGTCTCATCCCAGTGCAACTT
CTATGGGTCAATCTTGTTACGGATGGCCCTCCAGCGACAGCTTTAGGGTTCAACCCACCT
GATAAAGACATCATGAAGAAACCTCCTCGGAGAAGTGATGACTCGTTGATCACGCCTTGG
ATCCTGTTTCGCTATATGGTTATTGGCCTTTATGTTGGGGTTGCCACAGTGGGAATCTTC
ATCATCTGGTACACGCATGGCAGTTTCCTGGGAATTGACCTGGCTAGTGATGGCCATACC
CTTGTGTCGTACTCCCAGCTCTCAAACTGGGGGCAGTGCTCCTCATGGGAGGGCTTCAAG
GTGTCGCCATTCACTGCAGGAGCGAGGACATTCAGCTTTGATGCAAATCCATGCGATTAC
TTCCAGGGTGGCAAGATTAAAGCAACGACCCTCTCTTTGTCTGTCTTGGTGGCAATTGAG
ATGTTCAACTCACTGAATGCCCTGTCAGAGGATGGCAGCCTCCTGAGCATGCCGCCATGG
GTTAATCCATGGCTTCTTCTGGCCATGTCCGTTTCTTTTGGGCTGCATTTCTTGATCCTC
TACGTGCCTTTCCTGGCTCAAGTGTTTGGGATTGTGCCCCTCAGTTTGAACGAATGGCTC
TTGGTGATAGCAGTGGCCTTACCAGTGGTGCTGATCGATGAGGTTCTCAAATTTGTGGGG
CGGTGCCTGACAGCTCGTGCCCGAAAACAATCAGGGAAGAGGAAGGCAGAGTAGATGCTA
GTGATCATCGGTATTAGAATCTGTAGCGCCACGGGAATCGATATTGGATGTGACACCCCA
TTGTTTTTGAGTTGCTAAGGTCTTTCGATCCTTTCTGAGTCTTTTTAGACTGGGAATATG
ACAGTCCAGGACAGGCAAGGATATTCTATAGGACTCATAATCAGATCGCATTGAACACAC
TGCATTCTTTTCGTTGTAACAAATGCTGGTGCTGTGAACATGCTGGAGATACAGCAATGG
CTATCTGACGCTTTTTAGCTATGATGGTGCGCTATATATGCTACTACTGTTCTGTTGCGA
ATCTTCTGACATGTTGCTCACTGCTCAGTAATATATTTGTTAGAGTCGTATGTTCAGTTA
TGTTTGCTTGTGAGA