Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028549_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:1:38968864:38972965:1 gene:Zm00001d028549 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cysteine proteinases superfamily protein
Sequence

ATGGCGGCAGCGGCGCGGCCATCCAACGGTTGGTGCCTGTACTCTCCGCCCTTCAAGGCT
TCACTTCCCTCTCCTCATGAGGGGTGGGTGGTCGGCAGCGTTGAACAAGGTGGAGCATTA
CGGGGTTCAGAGGGTTACCGGCGATGGCCGGTGCATGTTTCGAGCGCTGGTAAGTTGCAG
CATAATCTCCTACTTGTGCAGGTTTCTTCACCGGATTTTCTTAAGTCTTTACAGGCAGCT
TGTAGTCCGATTTTTGCATCTTTGATTTGGAGAGTTTTAGAAGGGCTTGGTGCAGTTGTG
AAAGTCATCAGGTCATGGGTTTCAAGCAGCCTCTCCATTTTTATGGAGGAAGATGATTTA
CGGATGGCAGTGAAAGAAATTATATGTGACAGCGAGACTGGGCGGCAGGAGTACGAAGAA
GCAGTTATAGCAATTACTGTGGAGCAATCATTGAAACGCTACTGCCAAAGGATAAGGAGG
CCTGATTTCTGGGGTGGAGAGTCAGAATTCCTGGTTTTGTCTAGACTGTGTCGGCAGCCA
ATAATTATTTATATTCCAGAGCGTGAGTACCATGGTCGGGGTAATGGTTTCATTCCTATA
GCTGAATATGGTTTGGAATTCACCAAAAATACAAAGCAGTGGAAGAAAAAGACACCAGTA
AGACTATTATACAGTGGAAGGAACCATTATGATTTGCTTGTGTGA

Peptide Sequence

PEP ID

Zm00001d028549_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:1:38968864:38972965:1 gene:Zm00001d028549 transcript:Zm00001d028549_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cysteine proteinases superfamily protein
Sequence

MAAAARPSNGWCLYSPPFKASLPSPHEGWVVGSVEQGGALRGSEGYRRWPVHVSSAGKLQ
HNLLLVQVSSPDFLKSLQAACSPIFASLIWRVLEGLGAVVKVIRSWVSSSLSIFMEEDDL
RMAVKEIICDSETGRQEYEEAVIAITVEQSLKRYCQRIRRPDFWGGESEFLVLSRLCRQP
IIIYIPEREYHGRGNGFIPIAEYGLEFTKNTKQWKKKTPVRLLYSGRNHYDLLV

Transcript Sequence

Transcript ID

Zm00001d028549_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:38968864:38972965:1 gene:Zm00001d028549 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cysteine proteinases superfamily protein
Sequence

ATGGCGGCAGCGGCGCGGCCATCCAACGGTTGGTGCCTGTACTCTCCGCCCTTCAAGGCT
TCACTTCCCTCTCCTCATGAGGGGTGGGTGGTCGGCAGCGTTGAACAAGGTGGAGCATTA
CGGGGTTCAGAGGGTTACCGGCGATGGCCGGTGCATGTTTCGAGCGCTGGTAAGTTGCAG
CATAATCTCCTACTTGTGCAGGTTTCTTCACCGGATTTTCTTAAGTCTTTACAGGCAGCT
TGTAGTCCGATTTTTGCATCTTTGATTTGGAGAGTTTTAGAAGGGCTTGGTGCAGTTGTG
AAAGTCATCAGGTCATGGGTTTCAAGCAGCCTCTCCATTTTTATGGAGGAAGATGATTTA
CGGATGGCAGTGAAAGAAATTATATGTGACAGCGAGACTGGGCGGCAGGAGTACGAAGAA
GCAGTTATAGCAATTACTGTGGAGCAATCATTGAAACGCTACTGCCAAAGGATAAGGAGG
CCTGATTTCTGGGGTGGAGAGTCAGAATTCCTGGTTTTGTCTAGACTGTGTCGGCAGCCA
ATAATTATTTATATTCCAGAGCGTGAGTACCATGGTCGGGGTAATGGTTTCATTCCTATA
GCTGAATATGGTTTGGAATTCACCAAAAATACAAAGCAGTGGAAGAAAAAGACACCAGTA
AGACTATTATACAGTGGAAGGAACCATTATGATTTGCTTGTGTGACATAGTTGCAGAGCA
ATGTATTTTTCTAGTGCCCGTCGTCATACCATGGTTGTATTATTTTTTGTTTTTATACCT
GTGCTTGTGCCCCTTTTTTGAGCCACCAATGGAATTGATTCAGTTATCCAAATATCAGTT
TCGAAATATATATATTTCTCGTTTGCAT