Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028546_T040
CDS Infomation

cds chromosome:B73_RefGen_v4:1:38906094:38914441:1 gene:Zm00001d028546 gene_biotype:protein_coding transcript_biotype:protein_coding description:SH3 domain-containing protein
Sequence

ATGAGAAGATTGGAGAGCTCATTCCGTAGCTTCTCTCGTCCGGTTCTTCATGCTGCTGCA
AGAGTAGTTCAGGAAATGGGCAAAAGTAGAGCAGCTGCTTTTGCTTTAGGTGCATATGAT
GAGGGTGCCAGTCTTGATGTTGGATCTCTTGATTCTGATTTTGAGAATCCAATGGCTGAA
GGTACCCGAAAGCAAAATCCGCTATCCAATGGTCATGGTGGAACGGACACAATAGCAGGA
TTATTAGCATCACTGATGGAAGTTGTGCGGACAACAGTAGCATGCGAGTGTGTATATGTT
CGAGCAATGGTCATCAAAGCTTTGATATGGATGCAAAATCCACATGAATCTTTTGAAGAG
CTAAAATCTATCATTGCATGCGAGTTGTCTGACCCAGCCTGGCCTTCCTCGCTCCTGAAT
GATGTCCTACTAACCTTACATGCTAGGTTCAAGGCAACCCCTGATATGGCTGTGACTCTG
CTTGAGATTGCAAGAATTTTTGCCACTAAAGTTCCTGGAAAGATTGATGCTGATGTTCTA
CAGTTGTTATGGAAGACATGCCTTGTAGGAGCAGGACCAGATGGGAAACATACAGCCTTG
GAAGCTGTAACTATAGTTCTTGATCTGCCACCACCTCAGCCTGGTTCAATGTCTGGACTC
ACTTCTGTTGATATGGTATCTGCCTCTGATCCAAAATCTGCAATGGCACTCCAAAGATTA
GTTCAAGCTGCTGTTTGGTTTCTAGGAGAAAATGCTAATTATGCTGCATCTGAGTATGCC
TGGGAGTCTGCAACACCACCCGGTACTGCATTAATGATGCTAGATGCTGATAAAATGGTT
GCTGCTGCAAGTTCCCGTAATCCTACACTTGCTAGCGCTCTGACAAGGCTTCAAAGGTGT
GCATTTAGTGGAAGCTGGGAGATCCGCATTGCTGCTGTACAAGCCCTAACTACCATTGCA
ATAAGGTCTGGTGAACCTTATAGACTGCAGATATATGAATTTCTTCATGCTTTGGCTCTT
GGAGGTGTGCAGTCAAACTTTTCAGAATTGCAGCTAAGTAATGGGGAAAATCAAGGTGCC
AGTGGTACTGGTCTTGGATCTTTAATAAGCCCAATGCTTAAGGTCCTAGATGAAATGTAT
AGAGGCCAAGATGATCTTGCCAGAGATATTCGCCAGCATGATAACAGCAAACAGGAATGG
AGTGATGAGGAACTCAAGAAACTTTATGAAACCCATGAGAGGCTTCTTGATTTTGTTTCC
TTATTCTGTTTTGTTCCAAGGGCTAAATACTTGCCCCTTGGTCCTACCAGTGCCAAGCTA
ATTGAGATCTACCGCAACCGTCATAACATAAGTGCTTCTGGTGGTCTAAGTGATCCTGCT
GTTGCCACTGGAATATCTGATCTCATGTATGAGTCCAAAGAAGTACATAAAGAGACCAAT
ACTGTCCAGTCTGGTATTGATCCCGATCTGGCAATGGCCTGGGCAGCAGGTTTGGAAGAC
GATGTTTGGGCAAACAACGCTCCAGCTGTGGATAAAGTAAAGGACTTCCTTGCCGGTGCT
GGAACTGATGCTCCTGATGTGGATGATGAGGAATACATGAACTCGAGGCCATCAGTCGGA
TATGATGATATGTGGGCTAAGACAATTCTTGAAACTTACGATGCAGAGGAAGATGATGGT
AGGTACTCTGGTGGATCCTCTCCTGAATCAACTGGTTCTGTTGAAACCTCCATATCGTCC
CATTTTGGAGGCATGAACTATCCATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCC
TCACAACAAACGATACGTGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAG
GAATCATTTGAAAACCCCCTTGGAGGGGGTGGAGGACGAAGTTTCGGATCCCACGAGGAT
GAAGATAAGAGTTCTGGTAACCCTCAGTCTGGGAAAGCTTTGTATGACTTCACAGCAGGC
GGTGATGATGAGCTGAGTTTAAACTCTGGAGAAGAAGTGGAGATTGAATACGAGGTCGAT
GGTTGGTATTATGTGAAGAAAAGGAGGCCTGGAAGGGATGGAAAGATGGCAGGTCTGGTT
CCTGTTCTGTATGTGAGTTCATGA

Peptide Sequence

PEP ID

Zm00001d028546_P040
PEP Infomation

pep chromosome:B73_RefGen_v4:1:38906094:38914441:1 gene:Zm00001d028546 transcript:Zm00001d028546_T040 gene_biotype:protein_coding transcript_biotype:protein_coding description:SH3 domain-containing protein
Sequence

MRRLESSFRSFSRPVLHAAARVVQEMGKSRAAAFALGAYDEGASLDVGSLDSDFENPMAE
GTRKQNPLSNGHGGTDTIAGLLASLMEVVRTTVACECVYVRAMVIKALIWMQNPHESFEE
LKSIIACELSDPAWPSSLLNDVLLTLHARFKATPDMAVTLLEIARIFATKVPGKIDADVL
QLLWKTCLVGAGPDGKHTALEAVTIVLDLPPPQPGSMSGLTSVDMVSASDPKSAMALQRL
VQAAVWFLGENANYAASEYAWESATPPGTALMMLDADKMVAAASSRNPTLASALTRLQRC
AFSGSWEIRIAAVQALTTIAIRSGEPYRLQIYEFLHALALGGVQSNFSELQLSNGENQGA
SGTGLGSLISPMLKVLDEMYRGQDDLARDIRQHDNSKQEWSDEELKKLYETHERLLDFVS
LFCFVPRAKYLPLGPTSAKLIEIYRNRHNISASGGLSDPAVATGISDLMYESKEVHKETN
TVQSGIDPDLAMAWAAGLEDDVWANNAPAVDKVKDFLAGAGTDAPDVDDEEYMNSRPSVG
YDDMWAKTILETYDAEEDDGRYSGGSSPESTGSVETSISSHFGGMNYPSLFSSKPSSHGA
SQQTIREEPPSYSTSVLQRKESFENPLGGGGGRSFGSHEDEDKSSGNPQSGKALYDFTAG
GDDELSLNSGEEVEIEYEVDGWYYVKKRRPGRDGKMAGLVPVLYVSS

Transcript Sequence

Transcript ID

Zm00001d028546_T040
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:38906094:38914441:1 gene:Zm00001d028546 gene_biotype:protein_coding transcript_biotype:protein_coding description:SH3 domain-containing protein
Sequence

ATGTCTGCAAATGTATGAACATGCTGTTTCATATTCATTTTCTTCTCATTGGACTTGATA
TGACTGCAGGATTGAATTTTCCGACCCAGTTGCAGTCAGACATGCATTGTCAATAATATC
TGAAATTGCTGCGAAAGATCCATACTCTGTCGCAATGGCATTGGGCAAAAGTGCACAACC
CGGTGGTATGCTTCCTTTTTCTTCAGCATCTTTTGTTAGTCTTCTTTAATCATTTGAATA
CAAACATGTTCCAAAGTGATTTCAGCTAATAGTTTATAACTTTCTATTGCCCATGATAAA
TGTTTCAAACAATACAGTTATCAGTAAAAAGCAAGTAAAGCGAGGTTATTAAATAGCTAG
CTTTAGATTGGCTATTTTTAGCTATATTTTGACGCCTCGACACTATGCCACTTGTTTGCT
ACAAACTCTATTTAAAATGCTGGGCAAAACAATTCTAGTTTTCATTTGATTTGAGTTACA
AGAATCAAGATTTTTGTGCAAAATACAGATATACCAATGAATTTGGTATTGTGGAGAAGT
GAATATCTTAATTGCTCTTTGTAAAGAAAAAGCTAGACCAACCTAGGAGGAACTAGGCGG
CTGTATATTGTAAGGCCAGTCTCAGTGGGGGTTTCATGTCCCTGTTTTTAAGACTCACAA
GTCACAAGTGTTGGAAACAGTGCAAACAATGAAACTTTTATCATCTTTCTCTCTTCATTT
ATGCTATGCCACCATTGCCATGTCATCTTATTCAATGCCCATGAAATTCTCACGAAAGTC
CCATTGAGCCTGGCCTAAGAAGAAAACAAACAGCCAGATGAGGACTCGGACTTATGTGGT
TTAGGCATATATCTACATCCTCAATCAATGGAGCTAGGCTCAGTTCATACTGCCCTTCAT
AACTATCCCTTTAAATATGTTTACTCATTGTCATTGGCCTACCCGATTATAAGTAACATG
CAGGGGACAATATATCTTCTTGTCAGTGTCTCAAGTATTACATCATCATTAACAACAACA
ACAAAACCTTTTAGTCCCAAGCAAGTCAGGGTAGTCTAGTGTTTCAAGTATTACATGCTC
TAAATAATATCAGGAAAATATCGTATAACTTTGTGTAATATCTGGTTACAGTGGCCAATT
CTACTACCAATTTCTCCCAGCTCTATCTAAAAGCCATTACTTCTTAGATTGTATATAATT
GATTCCTTCCTCTTTTGTCAAATCCAGTTATGTTAAAATTTCTTATTTTCACTTCGATGT
ACTTATTTGTGTACAATATCATATATCATTGTTCCAAACTGAAACAGGAGCTCTTCAGGA
CATTCTTCATTTGCATGATGTCCTTGCCAGGGTTTACCTTGCAAAGTTGTGTCATTCGAT
ATCTAGAGCACGTGTATTGGACCAGAGGCCTGACATAAAGTCACAGTACAGTTCCCTCCT
TTATCAACTTCTTCTGGATCCCAGTGACAGGGTCTGCTTTGAGGCCATAAATTGTGTGTT
GGGAAAAGTCGACAACACAGAAAGCACGGAGGACAGAGCTGGTGGATGGATTCAGTTAAC
TAGAGAAATTCTCAAATTGCCAGAGGCCCCTTCTGTAGCATCAAAGGGTGTTCTGGCAAA
ATCTAGTGAAAAATCTTCAAAAGCAAGGCGCCCTCAGCCTCTCATCAAACTTGTAATGAG
AAGATTGGAGAGCTCATTCCGTAGCTTCTCTCGTCCGGTTCTTCATGCTGCTGCAAGAGT
AGTTCAGGAAATGGGCAAAAGTAGAGCAGCTGCTTTTGCTTTAGGTGCATATGATGAGGG
TGCCAGTCTTGATGTTGGATCTCTTGATTCTGATTTTGAGAATCCAATGGCTGAAGGTAC
CCGAAAGCAAAATCCGCTATCCAATGGTCATGGTGGAACGGACACAATAGCAGGATTATT
AGCATCACTGATGGAAGTTGTGCGGACAACAGTAGCATGCGAGTGTGTATATGTTCGAGC
AATGGTCATCAAAGCTTTGATATGGATGCAAAATCCACATGAATCTTTTGAAGAGCTAAA
ATCTATCATTGCATGCGAGTTGTCTGACCCAGCCTGGCCTTCCTCGCTCCTGAATGATGT
CCTACTAACCTTACATGCTAGGTTCAAGGCAACCCCTGATATGGCTGTGACTCTGCTTGA
GATTGCAAGAATTTTTGCCACTAAAGTTCCTGGAAAGATTGATGCTGATGTTCTACAGTT
GTTATGGAAGACATGCCTTGTAGGAGCAGGACCAGATGGGAAACATACAGCCTTGGAAGC
TGTAACTATAGTTCTTGATCTGCCACCACCTCAGCCTGGTTCAATGTCTGGACTCACTTC
TGTTGATATGGTATCTGCCTCTGATCCAAAATCTGCAATGGCACTCCAAAGATTAGTTCA
AGCTGCTGTTTGGTTTCTAGGAGAAAATGCTAATTATGCTGCATCTGAGTATGCCTGGGA
GTCTGCAACACCACCCGGTACTGCATTAATGATGCTAGATGCTGATAAAATGGTTGCTGC
TGCAAGTTCCCGTAATCCTACACTTGCTAGCGCTCTGACAAGGCTTCAAAGGTGTGCATT
TAGTGGAAGCTGGGAGATCCGCATTGCTGCTGTACAAGCCCTAACTACCATTGCAATAAG
GTCTGGTGAACCTTATAGACTGCAGATATATGAATTTCTTCATGCTTTGGCTCTTGGAGG
TGTGCAGTCAAACTTTTCAGAATTGCAGCTAAGTAATGGGGAAAATCAAGGTGCCAGTGG
TACTGGTCTTGGATCTTTAATAAGCCCAATGCTTAAGGTCCTAGATGAAATGTATAGAGG
CCAAGATGATCTTGCCAGAGATATTCGCCAGCATGATAACAGCAAACAGGAATGGAGTGA
TGAGGAACTCAAGAAACTTTATGAAACCCATGAGAGGCTTCTTGATTTTGTTTCCTTATT
CTGTTTTGTTCCAAGGGCTAAATACTTGCCCCTTGGTCCTACCAGTGCCAAGCTAATTGA
GATCTACCGCAACCGTCATAACATAAGTGCTTCTGGTGGTCTAAGTGATCCTGCTGTTGC
CACTGGAATATCTGATCTCATGTATGAGTCCAAAGAAGTACATAAAGAGACCAATACTGT
CCAGTCTGGTATTGATCCCGATCTGGCAATGGCCTGGGCAGCAGGTTTGGAAGACGATGT
TTGGGCAAACAACGCTCCAGCTGTGGATAAAGTAAAGGACTTCCTTGCCGGTGCTGGAAC
TGATGCTCCTGATGTGGATGATGAGGAATACATGAACTCGAGGCCATCAGTCGGATATGA
TGATATGTGGGCTAAGACAATTCTTGAAACTTACGATGCAGAGGAAGATGATGGTAGGTA
CTCTGGTGGATCCTCTCCTGAATCAACTGGTTCTGTTGAAACCTCCATATCGTCCCATTT
TGGAGGCATGAACTATCCATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACA
ACAAACGATACGTGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAATC
ATTTGAAAACCCCCTTGGAGGGGGTGGAGGACGAAGTTTCGGATCCCACGAGGATGAAGA
TAAGAGTTCTGGTAACCCTCAGTCTGGGAAAGCTTTGTATGACTTCACAGCAGGCGGTGA
TGATGAGCTGAGTTTAAACTCTGGAGAAGAAGTGGAGATTGAATACGAGGTCGATGGTTG
GTATTATGTGAAGAAAAGGAGGCCTGGAAGGGATGGAAAGATGGCAGGTCTGGTTCCTGT
TCTGTATGTGAGTTCATGATAACAGCCGTGTGTATCGTTTCCCACACTTGTGGAAGCTGT
TTGGAGTTCATGGGCTTAACAAAAAGGCACACTGGAATGCTCCCGAGAGATCTTCGCATA
AACTCGTGCCCGTCGTATAGGCACGTGGCCTTGTGGAAGCAGGTCATATCCAGTCATCTT
GGGGTTCGTATGATGCTGCAGTGCTGTTCCTGGGAAAGATTTACGTGTTGATTTGTCTGG
ACCCACACCACTAGTCATTCAATTGATTGTTTTTTGTTGCTAAGGTGGAGACTCTTCAGA
GGTTAAACCGTTCATCTGTG