Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028511_T057
CDS Infomation

cds chromosome:B73_RefGen_v4:1:37580754:37592690:-1 gene:Zm00001d028511 gene_biotype:protein_coding transcript_biotype:protein_coding description:ARM repeat superfamily protein
Sequence

ATGTTTCGGGATTTTGTTCCCAGTATCTTGAATATATCAAGACAGTGTCTTGCTAATGGA
GAAGAAGATGTTGCTTCCATTGCGTTTGAAATTTTTGACGAACTAATTGAATCTCCTGCA
CCACTTCTTGGAGACTCTGTGAGGTCAATTGTGCAATTCTCGCTGGAAGTTTCTGCAAAC
CAGGATTTGGAAATAAATATAAGGCAACAGGCTATCCAGATAATTTCATGGCTGGTAAAA
TTTAAAGCATCTTTCTTGAAAAAGCACAAGCTGGTTGTACCTATCCTGCAAGTTATGTGC
CCATTGCTTACGGAAACAGCTAATGAAGATGAAGATTCTGATCTAGCAGCAGATCGTTCT
GCTGCCGAGGTCATTGATACAATGGCTATCAACTTACCAAGGCACGTTCTTGCACCAGTT
CTTGAGTTTGCTTCTCTGAGCTTTCATCACATTAATCCAAAGTATCGTGAGGCTGCTGTG
ACGTCACTTGGTGTTATCTCCGAGGGTTGTTGTGAACATTTGAAAGATAAGTTGGAGGAT
TGTCTGAAAATTGTTTTGGAAGCTTTAAAAGACCAAGAACAAATGGTTAGAGACCCATCA
GATGAAGTTAAGGAGAAGTCATATTATGCTCTTGCAGCATTCTGTGAGGACATGGGTGAA
GATATCCTACCGTATCTAGAGCCCTTGATATGCAGATTGGTTATGTCTTTGCAGAGCAGT
CCTCGGAACTTGCAGGAGACATGCATGTCTGCAATTGGTTCAGTGGCTGCTGCTGCGGAG
CAGGCTTTTACCCCATATGCCGAAAAAGTCCTTGAGATGATGAAAGGTTTTATGGTGCTA
ATTAATGACGAAGATCTGTGTGCACGTGCTAGGGCTACTGAAGTTGTTGGGATAGTAGCA
ATGGCAGTTGGCAGAGCAAGAATTGAAGCAATATTGCCTCCTTTTATTGAGGCTTCTATT
TCTGGTTTTGGATTGGATTACAGTGAACTCAGAGAGTACACTCATGGTTTCTTTAGTAAC
GTTGCTGAAATTTTGGGTGATAGTTTTACACAGTATCTTCCTCATGTTGTCCCTCTCGTA
TTTTCTTCCTGCAACTTGGATGATGGTTCTGCTGTGGACATTGATGATGCCGATAGCATT
GAAAATGGATTTGGCGGTGTTTCATCTGATGACGATGTTAATGATGAACCAAGAGTTAGA
AATATCAGTGTGAGGACTGGAGTATTAGATGAGAAAGCTGCTGCAACACAGGCTATTGGT
TTTTTCGCACTACACACGAAGAGTGCCTATGCTCCGTATCTGGAGGAGTCACTGAAGATT
TTGATCCGGCACAGTGGTTATTTCCATGAAGATGTCAGGCTGCAGGCAGTCATATCTTTG
AAACATATTCTAACTGCAGTTAGGGCAATACCTCCTGCACATGCTGATGTACTAGAGAAA
CAGAAGGATGTCCTTGATACTGTTCTGAACATCTACATCAAGACTATGACAGAGGATGAC
GATAAAGAGGTAGTTGCACAAGCTTGCATGAGTGTAGCAGACATTGTGAAGGACTGTGGT
TTTGCTGCAATTGAGCCTTACATGCTGAGGCTTGCTGAGGTAACACTGGTCCTTTTACGC
CAAGAATCAAGCTGTCAGCAAGTAGAGTCAGATGGTGAGGATGATGGCGACATTGACCAT
GATGAAGTCCTCATGGATGCAGTTTCAGATCTTTTGCCTGCTTTTGCAAAAGTGATGGGA
TCTTATTTTGATCCCATATTTGCAAAATTATTTGATCCGTTGATGAAATTTGCTAAATCT
CCCCATCCTCCCCAAGATAAGACTATGGTTGTTGCAACCTTAGCTGAGGTTGCTCAGGAA
ATGGGTGCTCCAATATCTGCTTATGTTGATAAGATAATGCCTTTGGTGTTGAAAGAGCTT
GCATCATCTGATGCTACTAATAGGAGAAATGCTGCTTTCTGTGCTGGCGAGATATGCAAG
AATGGGGGTGCTGCAGCACTGAAATACTATGGTGATATACTTCGTTCTCTGCATAATTTG
TTTAGTAACTCAGAATCAGATGATGCAGTAAGAGATAACGCTGCTGGTGCTATTGCTAGG
ATGATAATGGTGCAGCCTCAGTCGATTCCTCTCAACCAGGTTCTTCCAGTTTTTATCAAA
GCTTTGCCACTAAAAGAAGATCATGAAGAATCAATGACTGTCTATGGTTGCGTCTGCGGT
TTATTATTATCATCACATCCCCAGATCCTCCCTCTGGTGCCTGACGTCATACATGTCTTT
GCCCAAGTGGTGGTATCCCCAGATGAGAGCGATGAAGTGAAAACAAATATTGGCAAGGCT
ATTTCTCACTTGATATCTGTCTATGGCCAGCAAATGCAGCCAATACTGAGTGCCCTTCCA
CCAGCCCATGCAAACGCGCTGGCTTCATTTGCGAGTAGAAGATGA

Peptide Sequence

PEP ID

Zm00001d028511_P057
PEP Infomation

pep chromosome:B73_RefGen_v4:1:37580754:37592690:-1 gene:Zm00001d028511 transcript:Zm00001d028511_T057 gene_biotype:protein_coding transcript_biotype:protein_coding description:ARM repeat superfamily protein
Sequence

MFRDFVPSILNISRQCLANGEEDVASIAFEIFDELIESPAPLLGDSVRSIVQFSLEVSAN
QDLEINIRQQAIQIISWLVKFKASFLKKHKLVVPILQVMCPLLTETANEDEDSDLAADRS
AAEVIDTMAINLPRHVLAPVLEFASLSFHHINPKYREAAVTSLGVISEGCCEHLKDKLED
CLKIVLEALKDQEQMVRDPSDEVKEKSYYALAAFCEDMGEDILPYLEPLICRLVMSLQSS
PRNLQETCMSAIGSVAAAAEQAFTPYAEKVLEMMKGFMVLINDEDLCARARATEVVGIVA
MAVGRARIEAILPPFIEASISGFGLDYSELREYTHGFFSNVAEILGDSFTQYLPHVVPLV
FSSCNLDDGSAVDIDDADSIENGFGGVSSDDDVNDEPRVRNISVRTGVLDEKAAATQAIG
FFALHTKSAYAPYLEESLKILIRHSGYFHEDVRLQAVISLKHILTAVRAIPPAHADVLEK
QKDVLDTVLNIYIKTMTEDDDKEVVAQACMSVADIVKDCGFAAIEPYMLRLAEVTLVLLR
QESSCQQVESDGEDDGDIDHDEVLMDAVSDLLPAFAKVMGSYFDPIFAKLFDPLMKFAKS
PHPPQDKTMVVATLAEVAQEMGAPISAYVDKIMPLVLKELASSDATNRRNAAFCAGEICK
NGGAAALKYYGDILRSLHNLFSNSESDDAVRDNAAGAIARMIMVQPQSIPLNQVLPVFIK
ALPLKEDHEESMTVYGCVCGLLLSSHPQILPLVPDVIHVFAQVVVSPDESDEVKTNIGKA
ISHLISVYGQQMQPILSALPPAHANALASFASRR

Transcript Sequence

Transcript ID

Zm00001d028511_T057
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:37580754:37592690:-1 gene:Zm00001d028511 gene_biotype:protein_coding transcript_biotype:protein_coding description:ARM repeat superfamily protein
Sequence

GTCGTCAGCATTATAGCTAAGTATGCTATCCCTGCAGGAGAGTGGCCAGAGCTGTTACCT
TTCCTTTTCCAATGCAGCCAAAGTCCACAAGAAGATCATAGAGAAGTGGCTTTGATTCTT
TTCAGCTCCCTTACTGAAACTATTGGAGCTACTTTTCAGTCTCATCTGAACAATTTGCAA
CCTATTTTACTGAAATGTCTGCAAGACGAAACTAGCTCTCGAGTCAGAATTGCAGCCCTA
AAGGCTGTTGGATCATTCATAGAATATGTCAATGATGGAGGTGACATTGTAAAAATGTTT
CGGGATTTTGTTCCCAGTATCTTGAATATATCAAGACAGTGTCTTGCTAATGGAGAAGAA
GATGTTGCTTCCATTGCGTTTGAAATTTTTGACGAACTAATTGAATCTCCTGCACCACTT
CTTGGAGACTCTGTGAGGTCAATTGTGCAATTCTCGCTGGAAGTTTCTGCAAACCAGGAT
TTGGAAATAAATATAAGGCAACAGGCTATCCAGATAATTTCATGGCTGGTAAAATTTAAA
GCATCTTTCTTGAAAAAGCACAAGCTGGTTGTACCTATCCTGCAAGTTATGTGCCCATTG
CTTACGGAAACAGCTAATGAAGATGAAGATTCTGATCTAGCAGCAGATCGTTCTGCTGCC
GAGGTCATTGATACAATGGCTATCAACTTACCAAGGCACGTTCTTGCACCAGTTCTTGAG
TTTGCTTCTCTGAGCTTTCATCACATTAATCCAAAGTATCGTGAGGCTGCTGTGACGTCA
CTTGGTGTTATCTCCGAGGGTTGTTGTGAACATTTGAAAGATAAGTTGGAGGATTGTCTG
AAAATTGTTTTGGAAGCTTTAAAAGACCAAGAACAAATGGTTAGAGACCCATCAGATGAA
GTTAAGGAGAAGTCATATTATGCTCTTGCAGCATTCTGTGAGGACATGGGTGAAGATATC
CTACCGTATCTAGAGCCCTTGATATGCAGATTGGTTATGTCTTTGCAGAGCAGTCCTCGG
AACTTGCAGGAGACATGCATGTCTGCAATTGGTTCAGTGGCTGCTGCTGCGGAGCAGGCT
TTTACCCCATATGCCGAAAAAGTCCTTGAGATGATGAAAGGTTTTATGGTGCTAATTAAT
GACGAAGATCTGTGTGCACGTGCTAGGGCTACTGAAGTTGTTGGGATAGTAGCAATGGCA
GTTGGCAGAGCAAGAATTGAAGCAATATTGCCTCCTTTTATTGAGGCTTCTATTTCTGGT
TTTGGATTGGATTACAGTGAACTCAGAGAGTACACTCATGGTTTCTTTAGTAACGTTGCT
GAAATTTTGGGTGATAGTTTTACACAGTATCTTCCTCATGTTGTCCCTCTCGTATTTTCT
TCCTGCAACTTGGATGATGGTTCTGCTGTGGACATTGATGATGCCGATAGCATTGAAAAT
GGATTTGGCGGTGTTTCATCTGATGACGATGTTAATGATGAACCAAGAGTTAGAAATATC
AGTGTGAGGACTGGAGTATTAGATGAGAAAGCTGCTGCAACACAGGCTATTGGTTTTTTC
GCACTACACACGAAGAGTGCCTATGCTCCGTATCTGGAGGAGTCACTGAAGATTTTGATC
CGGCACAGTGGTTATTTCCATGAAGATGTCAGGCTGCAGGCAGTCATATCTTTGAAACAT
ATTCTAACTGCAGTTAGGGCAATACCTCCTGCACATGCTGATGTACTAGAGAAACAGAAG
GATGTCCTTGATACTGTTCTGAACATCTACATCAAGACTATGACAGAGGATGACGATAAA
GAGGTAGTTGCACAAGCTTGCATGAGTGTAGCAGACATTGTGAAGGACTGTGGTTTTGCT
GCAATTGAGCCTTACATGCTGAGGCTTGCTGAGGTAACACTGGTCCTTTTACGCCAAGAA
TCAAGCTGTCAGCAAGTAGAGTCAGATGGTGAGGATGATGGCGACATTGACCATGATGAA
GTCCTCATGGATGCAGTTTCAGATCTTTTGCCTGCTTTTGCAAAAGTGATGGGATCTTAT
TTTGATCCCATATTTGCAAAATTATTTGATCCGTTGATGAAATTTGCTAAATCTCCCCAT
CCTCCCCAAGATAAGACTATGGTTGTTGCAACCTTAGCTGAGGTTGCTCAGGAAATGGGT
GCTCCAATATCTGCTTATGTTGATAAGATAATGCCTTTGGTGTTGAAAGAGCTTGCATCA
TCTGATGCTACTAATAGGAGAAATGCTGCTTTCTGTGCTGGCGAGATATGCAAGAATGGG
GGTGCTGCAGCACTGAAATACTATGGTGATATACTTCGTTCTCTGCATAATTTGTTTAGT
AACTCAGAATCAGATGATGCAGTAAGAGATAACGCTGCTGGTGCTATTGCTAGGATGATA
ATGGTGCAGCCTCAGTCGATTCCTCTCAACCAGGTTCTTCCAGTTTTTATCAAAGCTTTG
CCACTAAAAGAAGATCATGAAGAATCAATGACTGTCTATGGTTGCGTCTGCGGTTTATTA
TTATCATCACATCCCCAGATCCTCCCTCTGGTGCCTGACGTCATACATGTCTTTGCCCAA
GTGGTGGTATCCCCAGATGAGAGCGATGAAGTGAAAACAAATATTGGCAAGGCTATTTCT
CACTTGATATCTGTCTATGGCCAGCAAATGCAGCCAATACTGAGTGCCCTTCCACCAGCC
CATGCAAACGCGCTGGCTTCATTTGCGAGTAGAAGATGACCTTGGAGGACCAGCTTTTCT
TTGGTTCCTTGTTCTGCTTGATTTTGTTTTGGTTTTGTCGACGATTGCCATTTTCTGAGG
ATCTGGTCACATGGATCAGGCCAGATGGGAGTGCTTGCATTGCACATTGGCAAGGGCGAG
CGGAGTTGTCAGGTTGGCGCATGATTGATTATATGGTGAGCTTGGTTTCTCTTTGAGATA
CATAGTTGTGCTTGCTTTGGAGCCCTGTACGGTTATGAGTGCCTGCCTGTATTCAGGTTC
CGGATTTGGTTATTTATGCTCTTGTTTT