Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028481_T040
CDS Infomation

cds chromosome:B73_RefGen_v4:1:36481469:36485394:1 gene:Zm00001d028481 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:topless-related2 description: topless-related2
Sequence

ATGGGTGTTGTGCAATTCGATACCACCCGGAACAGGTTTTTGGCCGCGGGGGACGAATTC
ATGATTAAGATATGGGACATGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGT
GGCTTAACTGCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCC
ACTGCTGACAATGGTATCAAGATCTTAGCAAATGCTGATGGACTTCGGTTGCTGCGCACA
CTGGAAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGCCTCTA
ATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGTTCAGGAGCTGGTGCT
CCGTCAGCTATAACTGCAATGAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGA
ATAGCTGATGAGTCACTTGACAAGTCAAAGGTATGGAAGCTTATGGAGATAACTGAGTCA
AGTCAGTGCAGATCAATCAAACTGGCGGATAACATGAGAACAAGCAAGATTTCGAGATTG
ATTTACACAAACTCTGGTCTTGCTATCTTGGCTTTAACTTCAAGCGCTGTTCATCTACTC
TGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGGCAACCGCAAGTGTATCTCCCACT
CTATGGCAACCACCAAGTGGCATCTTGATGACTAATGACACGACTGACAATAATCCTGAA
GAAGCTGTTCACTGCTTTGCTTTGTCGAAGAATGATTCATATGTCATGTCTGCTTCTGGA
GGAAAAATCTCTCTGTTCAACATGATGACTTTCAAGACAATGACAACGTTTATGCCTGCA
CCGCCGGCAGCAACTTTTCTTGCATTTCATCCCCAAGATAACAACATAATTGCAATTGGA
ATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGGTCAAAAGCAAGCTC
AGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTTCAAATGTGCTAAATGTTTTAGTC
TCGTCAGGAGCTGATGCCCAGTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAG
AACAGATTTTTGCAGATACCATCAGGTCGCCAATCCAATATCTTGGACACTCGTGTTCAG
TTCCACCAAGATCAAATGCACTTTCTTGTTGTGCATGAAACCCAGATTGCCATCTATGAA
ACTACAAAACTAGAACCAGTGAAGCAGTGGCCTGTTCGAGAGAATTCACCTCCAATCACA
CATGCCACATTCTCGTGTGATAGTCAACTGATCTATGCAAGCTTTATGGATGCCACTGTT
GGCATATTTAATGGGTCGAGTTTGAGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTT
CCTCCAAATATCAGTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCA
AGCCAGTTTGCTCTAGGGCTGACTGATGGTGGTGTTTTTGTGTTGGAACCTTTGGAATCG
GAGAGAAAATGGGGAAATCCTCCACCAGTAGAGAATGGGTCTGCTAGCAACTTGTCCACA
CCGCCTCCTAATGGAGCTTCAAGTTCTGACCAACCAGAAAGATGA

Peptide Sequence

PEP ID

Zm00001d028481_P040
PEP Infomation

pep chromosome:B73_RefGen_v4:1:36481469:36485394:1 gene:Zm00001d028481 transcript:Zm00001d028481_T040 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:topless-related2 description: topless-related2
Sequence

MGVVQFDTTRNRFLAAGDEFMIKIWDMDSTGLLTTIDADGGLTASPRIRFNKEGTLLAVS
TADNGIKILANADGLRLLRTLENRSFDASRNASEAVTKPLINPLTAAANAAAASSSGAGA
PSAITAMNGDSRSLVDVKPRIADESLDKSKVWKLMEITESSQCRSIKLADNMRTSKISRL
IYTNSGLAILALTSSAVHLLWKWPRSDRNSGKATASVSPTLWQPPSGILMTNDTTDNNPE
EAVHCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPAPPAATFLAFHPQDNNIIAIG
MDDSTIQIYNVRIDEVKSKLRGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQK
NRFLQIPSGRQSNILDTRVQFHQDQMHFLVVHETQIAIYETTKLEPVKQWPVRENSPPIT
HATFSCDSQLIYASFMDATVGIFNGSSLRLQCRILPASYLPPNISPSVHPVVVAAHPSEA
SQFALGLTDGGVFVLEPLESERKWGNPPPVENGSASNLSTPPPNGASSSDQPER

Transcript Sequence

Transcript ID

Zm00001d028481_T040
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:36481469:36485394:1 gene:Zm00001d028481 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:topless-related2 description: topless-related2
Sequence

AGGTTATTTTCATGTGGGACTAGCAAGGATGGTGAATCACATCTAGTAGAATGGAATGAA
AGTGAAGGAGCAGTGAAGAGAACATATCAGGGATTCCGTAAGCGATCTATGGGTGTTGTG
CAATTCGATACCACCCGGAACAGGTTTTTGGCCGCGGGGGACGAATTCATGATTAAGATA
TGGGACATGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACTGCA
AGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCCACTGCTGACAAT
GGTATCAAGATCTTAGCAAATGCTGATGGACTTCGGTTGCTGCGCACACTGGAAAATCGT
TCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGCCTCTAATAAATCCCTTG
ACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGTTCAGGAGCTGGTGCTCCGTCAGCTATA
ACTGCAATGAATGGTGATAGCAGAAGTTTGGTTGATGTAAAACCTAGAATAGCTGATGAG
TCACTTGACAAGTCAAAGGTATGGAAGCTTATGGAGATAACTGAGTCAAGTCAGTGCAGA
TCAATCAAACTGGCGGATAACATGAGAACAAGCAAGATTTCGAGATTGATTTACACAAAC
TCTGGTCTTGCTATCTTGGCTTTAACTTCAAGCGCTGTTCATCTACTCTGGAAATGGCCA
CGCAGTGATCGGAATTCTGGAAAGGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCA
CCAAGTGGCATCTTGATGACTAATGACACGACTGACAATAATCCTGAAGAAGCTGTTCAC
TGCTTTGCTTTGTCGAAGAATGATTCATATGTCATGTCTGCTTCTGGAGGAAAAATCTCT
CTGTTCAACATGATGACTTTCAAGACAATGACAACGTTTATGCCTGCACCGCCGGCAGCA
ACTTTTCTTGCATTTCATCCCCAAGATAACAACATAATTGCAATTGGAATGGATGACTCA
ACCATCCAAATCTATAATGTCCGAATTGATGAGGTCAAAAGCAAGCTCAGAGGTCACTCT
AAGAGAATCACAGGTCTTGCCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCT
GATGCCCAGTTATGTGTTTGGAACACGGATGGATGGGAGAAGCAAAAGAACAGATTTTTG
CAGATACCATCAGGTCGCCAATCCAATATCTTGGACACTCGTGTTCAGTTCCACCAAGAT
CAAATGCACTTTCTTGTTGTGCATGAAACCCAGATTGCCATCTATGAAACTACAAAACTA
GAACCAGTGAAGCAGTGGCCTGTTCGAGAGAATTCACCTCCAATCACACATGCCACATTC
TCGTGTGATAGTCAACTGATCTATGCAAGCTTTATGGATGCCACTGTTGGCATATTTAAT
GGGTCGAGTTTGAGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATC
AGTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAGTTTGCT
CTAGGGCTGACTGATGGTGGTGTTTTTGTGTTGGAACCTTTGGAATCGGAGAGAAAATGG
GGAAATCCTCCACCAGTAGAGAATGGGTCTGCTAGCAACTTGTCCACACCGCCTCCTAAT
GGAGCTTCAAGTTCTGACCAACCAGAAAGATGATTAAGAAGTTGGAACTGGTAGATTTTT
CGTGGCACGAGTCTAACCAAGAAGACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCA
GATAGGTTCCAAGGGAGCCGGACAATGCGCTCAATAAAAATAAGTTCAACAGAAGTTTGT
CCGTTGCTTGTATAAATATTTGTATTGACTATCGAGTGAGGAGTCCTAGTATTTCATTTT
TGCTTTGTTTGCGGTGCTGTGAAAAGGATCAGTAGATAAGCTGTAGTACAACAACTATCA
GACTGGCTGTACTTACCTATATTTATGACTATTAGTTAATGTATGTTGTT