Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028436_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:1:34959941:34966555:1 gene:Zm00001d028436 gene_biotype:protein_coding transcript_biotype:protein_coding description:V-type proton ATPase subunit a3
Sequence

ATGGCGCGTGGTGGCGGAGGCGGCTGCTGCCCGCCAATGGATCTGATGCGATCGGAGGCG
ATGCAGCTGGTGCAGGTCATCATACCCGCTGAGTCAGCGCACCTCACCGTCTCCTACCTC
GGAGACCTCGGCCTCCTCCAGTTCAAAGACCTTAATATAGATAAGAGCCCGTTTCAACGG
ACATATGCTGCCCAGATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAGGTTTTTTAAG
GAGCAGATGTCAAAAGCTGACATAACAGCCTCTCCTACACAACTAAATGGAACTCATATG
GATTTTGATGAATTGGAGATAAAGCTTGGAGAACTGGAAGCTGAGCTAACTGAAGTTAAT
GCAAACAATGAAAAATTACAGAGGACCTATAATGAGCTATTAGAGTACCATACTGTTCTC
CAAAAGGCTGGTGAATTTTTCTATTCAGCTCAAAGAACTGCTGCAGCGCAACAAATGGAA
ATGGAGGCAAATCAATCTGGTCAAACTTCACTGGAGAGCCCTCTGTTGGAACAGGAGATG
ACAACTGATCCATCAAAACAAGTGAAGCTTGGCTCATTGAGTGGACTTGTTCCAAAGGAA
AAGGCAATGGCTTTTGAACGGATCTTATTCCGTGCCACAAGGGGTAACATTTTCCTTAGG
CAAGAGCCTGTTGATGAGCCAGTCACTGATCCAGTTTCTAGGGAGAAGGTAACGAAAAAT
GCATTTGTCATATTCTACTCTGGAGAGAGAGCAAAAACCAAAATTCTGAAGATATGTGAT
GCCTTTAATGCGAACCGTTACCCGTTTCCAGAAGATGTTGGCAAACAACTTCATGCTGTT
CAGGTATCTGGGAAGATCTCAGAGTTGAAGACAACAATTGACATGGGTTTAGCTCATCGT
GACAGTATACTAAAAAATATTGCTTCTGATTTTGAACAGTGGAACCATCTGGTCAAAAAG
GAAAAGGCAATTTATCACACCTTGAACATGCTAAGTGTTGATGTTACGAAGAAATGTTTA
GTTGCTGAGGGCTGGAGTCCAATTTTTGCAAGCATTCAGATTCAAGACGCTCTTCAGCGT
GCTACTCTTGATAGCAAATCCCAAGTTGGCTCAATATTTCAAGTTCTCAACACAAAAGAA
TCTCCTCCAACATATTTCCAGACAAATAAATTTACTTCAGCGTTCCAGGAAATTGTTGAT
GCGTATGGTGTAGCCAAGTATCAAGAAGCAAATCCTGGAGTATTCACCATTGTGACTTTC
CCTTTCTTATTTGCTGTCATGTTTGGTGATTGGGGCCATGGAATTTGCTTGTTACTTGCA
ACACTCTATCTTATAATCCGGGAGAAGAAACTAGCTTCACAGAAACTTGGAGACATAATG
GAGATGATGTTTGGTGGGCGTTATGTAATTATGATGATGGCAGTTTTTTCAATCTACACA
GGATTAATATACAATGAATTTTTCTCTGTTCCATTTGGGCTTTTCGGTAAATCTGCCTAT
GCATGCCGTGATTCTTCTTGCAGTGATGCTACTACCGAAGGACTTCTTAAAGTAAGAGAT
GCATACCCTTTTGGTGTGGACCCTGTCTGGCATGGTAGCCGCAGTGAGCTACCGTTTCTC
AACTCACTGAAGATGAAGATGTCGATTCTTCTTGGAGTTGCACAAATGAACCTTGGGATT
GTGATTAGTTACTTCAATGCAAAATTTTTCAGGAACAGTATTAATGTGTGGTACCAGTTC
ATTCCCCAGCTGATCTTCTTGAACAGCTTATTTGGCTACCTGTCCTTGCTCATTATTATT
AAGTGGTGCACGGGGTCGAAAGCAGATCTATACCACGTTATGATCTACATGTTCCTTAGC
CCAACAGATGATCTTAGTGAGAACCAGTTGTTTAGTGGCCAGAAGACAGTGCAGCTTGTT
CTACTTCTGCTTGCTTTAGTGTCTGTACCTTGGATGTTGATTCCAAAACCTCTTCTTTTG
AAGAAACAACATCAGCAAAGGCATCAAGGTCACCAGTACGCTATGCTTCAGGGCATTGAT
GAATCAGTGGGAGCAGAATTGGGGGAACATCATGAGGACGCACATGACCACGAGGAGTTT
GAGTTCGGTGAAGTTTTTGTTCACCAACTGATTCACACGATAGAATTTGTTCTGGGTGCA
GTCTCAAACACCGCTTCATACCTTCGTCTTTGGGCTCTGAGTCTTGCACACTCTGAGTTG
TCCACTGTATTCTACGAGAAAGTACTAATGACGGCATATGGGTTTAACAATGTTTTCATC
CTTATTATTGGTGTCGTCATCTTCATCTTTGCCACGATTGGTGTCTTGCTTGTTATGGAG
ACCCTGAGTGCATTCCTTCACGCGCTGAGGCTTCACTGGGTGGAGTTCCAGAACAAGTTC
TATGAAGGTGATGGCTACAAGTTTGCCCCATTCTCCTTCGCGCTGATTCGTGAGGAGGAA
GATTGA

Peptide Sequence

PEP ID

Zm00001d028436_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:1:34959941:34966555:1 gene:Zm00001d028436 transcript:Zm00001d028436_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:V-type proton ATPase subunit a3
Sequence

MARGGGGGCCPPMDLMRSEAMQLVQVIIPAESAHLTVSYLGDLGLLQFKDLNIDKSPFQR
TYAAQIKRCSEMARKLRFFKEQMSKADITASPTQLNGTHMDFDELEIKLGELEAELTEVN
ANNEKLQRTYNELLEYHTVLQKAGEFFYSAQRTAAAQQMEMEANQSGQTSLESPLLEQEM
TTDPSKQVKLGSLSGLVPKEKAMAFERILFRATRGNIFLRQEPVDEPVTDPVSREKVTKN
AFVIFYSGERAKTKILKICDAFNANRYPFPEDVGKQLHAVQVSGKISELKTTIDMGLAHR
DSILKNIASDFEQWNHLVKKEKAIYHTLNMLSVDVTKKCLVAEGWSPIFASIQIQDALQR
ATLDSKSQVGSIFQVLNTKESPPTYFQTNKFTSAFQEIVDAYGVAKYQEANPGVFTIVTF
PFLFAVMFGDWGHGICLLLATLYLIIREKKLASQKLGDIMEMMFGGRYVIMMMAVFSIYT
GLIYNEFFSVPFGLFGKSAYACRDSSCSDATTEGLLKVRDAYPFGVDPVWHGSRSELPFL
NSLKMKMSILLGVAQMNLGIVISYFNAKFFRNSINVWYQFIPQLIFLNSLFGYLSLLIII
KWCTGSKADLYHVMIYMFLSPTDDLSENQLFSGQKTVQLVLLLLALVSVPWMLIPKPLLL
KKQHQQRHQGHQYAMLQGIDESVGAELGEHHEDAHDHEEFEFGEVFVHQLIHTIEFVLGA
VSNTASYLRLWALSLAHSELSTVFYEKVLMTAYGFNNVFILIIGVVIFIFATIGVLLVME
TLSAFLHALRLHWVEFQNKFYEGDGYKFAPFSFALIREEED

Transcript Sequence

Transcript ID

Zm00001d028436_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:34959941:34966555:1 gene:Zm00001d028436 gene_biotype:protein_coding transcript_biotype:protein_coding description:V-type proton ATPase subunit a3
Sequence

ACCGCCGTACCCGTCGGAGATCCGCTCCGCCCGCGCGATTTCGATCCGAAACACCTCGTC
GGATCTTCAGGGATCTGACTGAGGGGCAGCGCGCCGGCTGCTGACACGGCGGGCACGCGC
GCAGCCAGCCATGGCGCGTGGTGGCGGAGGCGGCTGCTGCCCGCCAATGGATCTGATGCG
ATCGGAGGCGATGCAGCTGGTGCAGGTCATCATACCCGCTGAGTCAGCGCACCTCACCGT
CTCCTACCTCGGAGACCTCGGCCTCCTCCAGTTCAAAGACCTTAATATAGATAAGAGCCC
GTTTCAACGGACATATGCTGCCCAGATTAAAAGGTGTAGTGAAATGGCTCGTAAATTAAG
GTTTTTTAAGGAGCAGATGTCAAAAGCTGACATAACAGCCTCTCCTACACAACTAAATGG
AACTCATATGGATTTTGATGAATTGGAGATAAAGCTTGGAGAACTGGAAGCTGAGCTAAC
TGAAGTTAATGCAAACAATGAAAAATTACAGAGGACCTATAATGAGCTATTAGAGTACCA
TACTGTTCTCCAAAAGGCTGGTGAATTTTTCTATTCAGCTCAAAGAACTGCTGCAGCGCA
ACAAATGGAAATGGAGGCAAATCAATCTGGTCAAACTTCACTGGAGAGCCCTCTGTTGGA
ACAGGAGATGACAACTGATCCATCAAAACAAGTGAAGCTTGGCTCATTGAGTGGACTTGT
TCCAAAGGAAAAGGCAATGGCTTTTGAACGGATCTTATTCCGTGCCACAAGGGGTAACAT
TTTCCTTAGGCAAGAGCCTGTTGATGAGCCAGTCACTGATCCAGTTTCTAGGGAGAAGGT
AACGAAAAATGCATTTGTCATATTCTACTCTGGAGAGAGAGCAAAAACCAAAATTCTGAA
GATATGTGATGCCTTTAATGCGAACCGTTACCCGTTTCCAGAAGATGTTGGCAAACAACT
TCATGCTGTTCAGGTATCTGGGAAGATCTCAGAGTTGAAGACAACAATTGACATGGGTTT
AGCTCATCGTGACAGTATACTAAAAAATATTGCTTCTGATTTTGAACAGTGGAACCATCT
GGTCAAAAAGGAAAAGGCAATTTATCACACCTTGAACATGCTAAGTGTTGATGTTACGAA
GAAATGTTTAGTTGCTGAGGGCTGGAGTCCAATTTTTGCAAGCATTCAGATTCAAGACGC
TCTTCAGCGTGCTACTCTTGATAGCAAATCCCAAGTTGGCTCAATATTTCAAGTTCTCAA
CACAAAAGAATCTCCTCCAACATATTTCCAGACAAATAAATTTACTTCAGCGTTCCAGGA
AATTGTTGATGCGTATGGTGTAGCCAAGTATCAAGAAGCAAATCCTGGAGTATTCACCAT
TGTGACTTTCCCTTTCTTATTTGCTGTCATGTTTGGTGATTGGGGCCATGGAATTTGCTT
GTTACTTGCAACACTCTATCTTATAATCCGGGAGAAGAAACTAGCTTCACAGAAACTTGG
AGACATAATGGAGATGATGTTTGGTGGGCGTTATGTAATTATGATGATGGCAGTTTTTTC
AATCTACACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGGGCTTTTCGGTAA
ATCTGCCTATGCATGCCGTGATTCTTCTTGCAGTGATGCTACTACCGAAGGACTTCTTAA
AGTAAGAGATGCATACCCTTTTGGTGTGGACCCTGTCTGGCATGGTAGCCGCAGTGAGCT
ACCGTTTCTCAACTCACTGAAGATGAAGATGTCGATTCTTCTTGGAGTTGCACAAATGAA
CCTTGGGATTGTGATTAGTTACTTCAATGCAAAATTTTTCAGGAACAGTATTAATGTGTG
GTACCAGTTCATTCCCCAGCTGATCTTCTTGAACAGCTTATTTGGCTACCTGTCCTTGCT
CATTATTATTAAGTGGTGCACGGGGTCGAAAGCAGATCTATACCACGTTATGATCTACAT
GTTCCTTAGCCCAACAGATGATCTTAGTGAGAACCAGTTGTTTAGTGGCCAGAAGACAGT
GCAGCTTGTTCTACTTCTGCTTGCTTTAGTGTCTGTACCTTGGATGTTGATTCCAAAACC
TCTTCTTTTGAAGAAACAACATCAGCAAAGGCATCAAGGTCACCAGTACGCTATGCTTCA
GGGCATTGATGAATCAGTGGGAGCAGAATTGGGGGAACATCATGAGGACGCACATGACCA
CGAGGAGTTTGAGTTCGGTGAAGTTTTTGTTCACCAACTGATTCACACGATAGAATTTGT
TCTGGGTGCAGTCTCAAACACCGCTTCATACCTTCGTCTTTGGGCTCTGAGTCTTGCACA
CTCTGAGTTGTCCACTGTATTCTACGAGAAAGTACTAATGACGGCATATGGGTTTAACAA
TGTTTTCATCCTTATTATTGGTGTCGTCATCTTCATCTTTGCCACGATTGGTGTCTTGCT
TGTTATGGAGACCCTGAGTGCATTCCTTCACGCGCTGAGGCTTCACTGGGTGGAGTTCCA
GAACAAGTTCTATGAAGGTGATGGCTACAAGTTTGCCCCATTCTCCTTCGCGCTGATTCG
TGAGGAGGAAGATTGAGCTTGTCTCAACATTTGTATTTATTGTAGCCGATAAAAAATCTT
TGGTGGTCTTTGTTCCCAGACCAAATCATTTTTTCATCTGTTGTGTCGGATGTGGATCAT
AAACCACCGTCCCTTTGTTTAAACTGGGACGAACAGCATCATTTTTCCTTAGCTATGCAG
AGGATTCTTGGGTTGGTTGGCAACAGATATGGGGTGATGTCACCCTTGTATGATGCTAAT
AAGTAGTTGCCGATTGGGCGGTGTGTTGGATATAAATAAGCACTGTATTGAAGGTTAGAC
AATCTCCATCACGTTCATTGT