Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d028417_T009
CDS Infomation	cds chromosome:B73_RefGen_v4:1:34218092:34223589:-1 gene:Zm00001d028417 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy9 description:Autophagy protein 9
Sequence	ATGATGTCCTTCCGTTCGAAGGACGCACATGCACAAACAAGACTTAACTGGCCATGGAGA AGCCAATCGCCGTTATCAGCGCAGCTGCTTGTTGATATTCCACCTGAAATAGAGTTGTCC GACTACCGGAGATTGCCAAGTTCTCGAAGCGAGAGCCCATCTGGACTTCTCCATGACGAA GGCGTCAAGGAAGAACCTATCCCTGATCTGGACATTTTCTTTGAAAGGCTTTACGAATAT TTCTGCGCAAAAGGGCTCAGGTGTATCATTACCAAATGGATAATAGAGATCCTCAATGTA CTTTTTATGGTATGCTGTATCGGGTTCTTTTTCTTATTTGTTGATTGGGATACTCTTATT CATTTGAAATGCGGTGTGGAGGCACTTGAGTCTGGGGAGAAACCATGTGATCTTATGAAG GCCATTAAGCATGATCCATTAGTTCCCTTCACATTGCCCAAAATGATAACTGTTGGATCA ATGGTCATAATGACAGCTTATGGACTTACCAACTTTCTCAAGTTCTTTGTACAGTTAAGA AGTACACTCAATGTTCGTCAGTTCTACTATGACAGACTTAAGGTCAATGATCTTGAGATT CAAACTATATCATGGCCCAAAATAATTGAGAAAGTTGTCCTGCTCCAGAAATCTCAAAAA CTATGTGTTGTTAGGGATCTCTCAGAGCATGATATTATCATGAGAATCATGAGGAAAGAA AATTATTTGATTGGGATGGTCAATAAAGGCATTCTTTCTTTTCCAATTCATTCTTGTGTG CCTGGGGCTGGCCCAACTGGATCACATGAGCATGGCAGGAGAAACTATCTGATACTTCCA AAGTCCCTTGAATGGACCTTAAACTGGTGCATCTTTCAAAGTATGTTCGATAGTAAATTT TGTGTAAGGAAAGAGTTTTTGACAAGCCCAGATGTGTTGAGAAAGCGACTTATATTTGTT GGCATTGCAATGCTTATCCTATCACCCTGCCTTGTGATATTTCCATTGGTGTACGTCATT CTAAGGCATGCTGAAGAAATTTATAATCACCCTAGTACAGCATCATCTAGACGGTGGTCA AACTTATCAAGGTGGATCTTTAGGGAATATAACGAGGTTGATCACTTCTTTAGACACAGA ATGAACAACAGCGCTGTTCATTCTTTAAATTACTTGAAGCAATTTCCAACCCCACTGGTT TCCATCATGGCTAAATTTGTATCTTTTGTTTCTGGTGGCTTGGCTGGTGCTCTAATAATC ATTGGATTTGTGGGTGAATCTATTCTTGAAGGACATATTTTTGGAAGAAATCTTCTCTGG TATACTATTGTTTTTGGAACAATAGCAGCTATAAGTCGAAAAGTAGTGGCCGATGAGCTT CAAGTTTTTGACCCAGAAGGGGCCATGTGCCTCGCTGTTCACCAAACACATTACATGCCA AAGCGATGGCGTGGTAAAGAGAACAGCGAACTTGTACGAAGAGAATTTGAGACATTATTT CCGTATACTATAATCATGCTACTTGAAGAGATGGCCTCCATTTTCATCACTCCTTACTTG CTTATTTCTGAGGTACCTAAGCGAGTTGATGACATTCTGCGCTTCATCTCAGACTTCACA ATATATGTAGACGGAGTGGGAGATGTATGCAGTCTAAGCTTGTTTAACTTCAAAAAACAT GGAAATAGAAACTATGGGTCACCATTCAATGCTCTTAAAGGTCTCAGGAGCTCCCAAGGG AAGATGGAGAAATCATTCTTAAGGTACATGCAGTTTCAAGTATTTCTTTTACTTTTTTAC TAG

Peptide Sequence

PEP ID	Zm00001d028417_P009
PEP Infomation	pep chromosome:B73_RefGen_v4:1:34218092:34223589:-1 gene:Zm00001d028417 transcript:Zm00001d028417_T009 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy9 description:Autophagy protein 9
Sequence	MMSFRSKDAHAQTRLNWPWRSQSPLSAQLLVDIPPEIELSDYRRLPSSRSESPSGLLHDE GVKEEPIPDLDIFFERLYEYFCAKGLRCIITKWIIEILNVLFMVCCIGFFFLFVDWDTLI HLKCGVEALESGEKPCDLMKAIKHDPLVPFTLPKMITVGSMVIMTAYGLTNFLKFFVQLR STLNVRQFYYDRLKVNDLEIQTISWPKIIEKVVLLQKSQKLCVVRDLSEHDIIMRIMRKE NYLIGMVNKGILSFPIHSCVPGAGPTGSHEHGRRNYLILPKSLEWTLNWCIFQSMFDSKF CVRKEFLTSPDVLRKRLIFVGIAMLILSPCLVIFPLVYVILRHAEEIYNHPSTASSRRWS NLSRWIFREYNEVDHFFRHRMNNSAVHSLNYLKQFPTPLVSIMAKFVSFVSGGLAGALII IGFVGESILEGHIFGRNLLWYTIVFGTIAAISRKVVADELQVFDPEGAMCLAVHQTHYMP KRWRGKENSELVRREFETLFPYTIIMLLEEMASIFITPYLLISEVPKRVDDILRFISDFT IYVDGVGDVCSLSLFNFKKHGNRNYGSPFNALKGLRSSQGKMEKSFLRYMQFQVFLLLFY

Transcript Sequence

Transcript ID	Zm00001d028417_T009
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:34218092:34223589:-1 gene:Zm00001d028417 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy9 description:Autophagy protein 9
Sequence	GATCCCTACACGTCTCCTGAAACGCACGCCCTCCCTTGGCTGCCCCCCGCCCCTTCCCTT TCGCCCCCTCTCGCGCAATTTCCCCAGCCCGGACCCCAACCCCGGCGGCGCTGCAGTCCA CCGCAAGTCACCTCCACCTCACGCGAGGCCTCCAGCCCTCGTCGCCCCGCGCTTCTCCCC CACGACCCGGCCGCCTTCGCGCTTGCGCCCCGCGGATCGCCGGCGCGACCCTCAGGTGTG TACGTCTGGCATGGCAAGGGACCTATCAACTGGCCCTGCTTTCTCTTTTCATGAATGATG TCCTTCCGTTCGAAGGACGCACATGCACAAACAAGACTTAACTGGCCATGGAGAAGCCAA TCGCCGTTATCAGCGCAGCTGCTTGTTGATATTCCACCTGAAATAGAGTTGTCCGACTAC CGGAGATTGCCAAGTTCTCGAAGCGAGAGCCCATCTGGACTTCTCCATGACGAAGGCGTC AAGGAAGAACCTATCCCTGATCTGGACATTTTCTTTGAAAGGCTTTACGAATATTTCTGC GCAAAAGGGCTCAGGTGTATCATTACCAAATGGATAATAGAGATCCTCAATGTACTTTTT ATGGTATGCTGTATCGGGTTCTTTTTCTTATTTGTTGATTGGGATACTCTTATTCATTTG AAATGCGGTGTGGAGGCACTTGAGTCTGGGGAGAAACCATGTGATCTTATGAAGGCCATT AAGCATGATCCATTAGTTCCCTTCACATTGCCCAAAATGATAACTGTTGGATCAATGGTC ATAATGACAGCTTATGGACTTACCAACTTTCTCAAGTTCTTTGTACAGTTAAGAAGTACA CTCAATGTTCGTCAGTTCTACTATGACAGACTTAAGGTCAATGATCTTGAGATTCAAACT ATATCATGGCCCAAAATAATTGAGAAAGTTGTCCTGCTCCAGAAATCTCAAAAACTATGT GTTGTTAGGGATCTCTCAGAGCATGATATTATCATGAGAATCATGAGGAAAGAAAATTAT TTGATTGGGATGGTCAATAAAGGCATTCTTTCTTTTCCAATTCATTCTTGTGTGCCTGGG GCTGGCCCAACTGGATCACATGAGCATGGCAGGAGAAACTATCTGATACTTCCAAAGTCC CTTGAATGGACCTTAAACTGGTGCATCTTTCAAAGTATGTTCGATAGTAAATTTTGTGTA AGGAAAGAGTTTTTGACAAGCCCAGATGTGTTGAGAAAGCGACTTATATTTGTTGGCATT GCAATGCTTATCCTATCACCCTGCCTTGTGATATTTCCATTGGTGTACGTCATTCTAAGG CATGCTGAAGAAATTTATAATCACCCTAGTACAGCATCATCTAGACGGTGGTCAAACTTA TCAAGGTGGATCTTTAGGGAATATAACGAGGTTGATCACTTCTTTAGACACAGAATGAAC AACAGCGCTGTTCATTCTTTAAATTACTTGAAGCAATTTCCAACCCCACTGGTTTCCATC ATGGCTAAATTTGTATCTTTTGTTTCTGGTGGCTTGGCTGGTGCTCTAATAATCATTGGA TTTGTGGGTGAATCTATTCTTGAAGGACATATTTTTGGAAGAAATCTTCTCTGGTATACT ATTGTTTTTGGAACAATAGCAGCTATAAGTCGAAAAGTAGTGGCCGATGAGCTTCAAGTT TTTGACCCAGAAGGGGCCATGTGCCTCGCTGTTCACCAAACACATTACATGCCAAAGCGA TGGCGTGGTAAAGAGAACAGCGAACTTGTACGAAGAGAATTTGAGACATTATTTCCGTAT ACTATAATCATGCTACTTGAAGAGATGGCCTCCATTTTCATCACTCCTTACTTGCTTATT TCTGAGGTACCTAAGCGAGTTGATGACATTCTGCGCTTCATCTCAGACTTCACAATATAT GTAGACGGAGTGGGAGATGTATGCAGTCTAAGCTTGTTTAACTTCAAAAAACATGGAAAT AGAAACTATGGGTCACCATTCAATGCTCTTAAAGGTCTCAGGAGCTCCCAAGGGAAGATG GAGAAATCATTCTTAAGGTACATGCAGTTTCAAGTATTTCTTTTACTTTTTTACTAGGCA TGTAGTGTGGGTTATCACAAGTGCATCGTAAGTGCTGTCAAGGATTGGTTTAGATGGATT GGAGTTTTCAATAGTTGCTTTCTCTGAAGTTTGTGGTCAACTTTCCTGAGCTAGGCAGCA CCCCCAGGAGTCCGATTTTGAGAGCATCTAGAGATGGATGGTGCTGTCTAGCCTGGGAAG CTAGGCAGGGCAGCAACCAAACAGGTGTACTTCTACTGTAGTGTAGTTGAATTGGAACGT GATGCTTGCAAAGTTATGTC