Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028412_T057
CDS Infomation

cds chromosome:B73_RefGen_v4:1:34034848:34038185:1 gene:Zm00001d028412 gene_biotype:protein_coding transcript_biotype:protein_coding description:Filament-like plant protein 4
Sequence

ATGAAAATTGATGAGGAAAAAGGTCAAGCTGAAGCTGAGATCGAAATTTTAAAAAGCACA
ATTCAATCAGGTGAAAGGGAGATAAATTCGCTAAAATATGAATTGCATGTTGTCTCCAAA
GAGCTTGAAATCCGCAATGAAGAAAAGAATATGAGTGTGCGCTCAGCTGATGTAGCAACT
AAACAGCACCAGGAAGATGTCAAGAAAATATCAAAACTCGAAGCTGAATGCCAAAGATTA
CGCGGCCTTGTTCGAAAGAAGTTACCTGGCCCTGCTGCACTAGCTCAAATGAAAATGGAG
GTGGAGAGCTTGGGTAGAGAATATGGAGACCACAGAGTACGAAGATCCCCTGCAAAGAAT
TCTAGTTTTCATCGGCCTATGTCTCCTGTTCCTGATTATGCAATGGAGAACATACATCAC
ATGCAGAGAGACAATGAGTTTCTGACTGCTCGTTTATTAACAATGGAAGAAGAAACCAAG
ATGCTTAAAGAGGCATTGGCAAAGAGAAACAGTGAGCTGCAATCTTCAAGAAGCATGTAT
GCTAAGACAACAGGAAAGCTCCGAAGCTTGGAAGTTCAAATGTTGACTGGAAACAAACAT
AAGAGTCCATCAACTCCAAACATGGATATTCACTTTGATGGTGCATTTAGCCAAAATGGA
AGCAACCCACCTAGCATGACTTCCATGTCTGAAGATGGGGTAGATGATGAAGGAAGTTGT
ACAGAATCTTGGACCAATGCTCTGGTATCTGAGCCCTGTCAATTCAAAAAAGAGAAGGCA
GCCAAGAGCAGCACGACAGAAAGCTCCAATAGGTTGGAGCTCATGGATGACTTCTTAGAG
ATGGAGAGATTAGCATGTCTGTCTTCTGAAGTTAATGGCAATGGCAGTACTGTTGACAAG
ATGAAGGTAGACAATGTTGGGGCTACTTTTGCTGGCTTTACTGAAAGAGATGGTGTTAAA
GATTTGCAGTCAGCTTCACCAATGTCAGAAACTCCATCTAATAAACAGTGTCTGTCTGAG
AAATCTCCGCTTTTGAATTTCCAGTCAAGAATATCTTCCTTACTGGATTCTGAATCACCA
GAGAATAATGCTGGAAAGGTACTTGATAGCATCAGAAACATTCTAAAGGATATTGAAGAT
GAGGCAGATTCGGTGAATGTAAATGGGACTCATCCTTCAGATGGGACCTTAAGTTCAGAG
AGCAAATTTGCCATGGATCAAGATCTTAAGAATGCCATATTGAAAATTCTAGACTTTGTG
AAGTTACTTGATCAAGAAATCTCCAAGTTTCAAGGCCAGTCACCTGATTATGATGGACTA
TGTGAGAAAACACAACAGTTCTCTGCATTAGTCGATAAAGTTCTGTCAAACGTTGATGTT
CTAAATGATATTGTCATAGCACTGTCTGTTATCTTGTCAGAAACTAGCCAGATTAAGTTC
ACATTGTTGAGAGACAATAGCAATGAAGCAGAAAGTAATAACTTAGATTGTGTTGATAAA
GTGACTCTACTTGAAAATAAGGTGCAGCTTGAGCCAGTAAAAGACAATGTTCCTGGTATC
TGCCCACTGTTGCCTCATTCATCTTCTGATCCTGAGTTTGAGGGGCCTGCTGATGCTAGA
TTCGATGTTAAGACTGCAGTGAAGGTGTACTCGCCGGAGGAATATGAACAACTTAAATCT
GAGAAGGCAAATTTGGAGGGAGAACTAGCAAAGTGCAACAAAATAATAGAAGAAACAATG
GCTAGGTTAAGTGATATGGAGAAAAAACTGGAAGACCTGACATCTAAGTTGGCTGACAGT
GAGAAATCAAATAGCTTGAATGAGACACAGTTGAAGTGTATGGCTGAATCCTACAAGTCA
CTTGAATCAAGGAAAATTGAATTAGAAAATGAGATAGAAGCGTTACGGTCCAGAATAGAT
GCTCTAACAGCTGAACTCTTTGATGAAAGACAGAGTCATCAGGAGGACTTAGTTAAATAC
AGAGATCTCGAGGAGAAGATGGAAAGGTATGAGATGGAGAGGAGTTCAATTCTTGTGGAT
GAGGACCCAGACAACAAGTCAAAGCAGGTACAGTACTTAGGATTTTCCCATTGCTATTGT
CTACGATCTTCATTCATTTGTTGCGTTTTAATCTTGATGAAAAGTACTGGCAGCACAACC
ATATGA

Peptide Sequence

PEP ID

Zm00001d028412_P057
PEP Infomation

pep chromosome:B73_RefGen_v4:1:34034848:34038185:1 gene:Zm00001d028412 transcript:Zm00001d028412_T057 gene_biotype:protein_coding transcript_biotype:protein_coding description:Filament-like plant protein 4
Sequence

MKIDEEKGQAEAEIEILKSTIQSGEREINSLKYELHVVSKELEIRNEEKNMSVRSADVAT
KQHQEDVKKISKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGREYGDHRVRRSPAKN
SSFHRPMSPVPDYAMENIHHMQRDNEFLTARLLTMEEETKMLKEALAKRNSELQSSRSMY
AKTTGKLRSLEVQMLTGNKHKSPSTPNMDIHFDGAFSQNGSNPPSMTSMSEDGVDDEGSC
TESWTNALVSEPCQFKKEKAAKSSTTESSNRLELMDDFLEMERLACLSSEVNGNGSTVDK
MKVDNVGATFAGFTERDGVKDLQSASPMSETPSNKQCLSEKSPLLNFQSRISSLLDSESP
ENNAGKVLDSIRNILKDIEDEADSVNVNGTHPSDGTLSSESKFAMDQDLKNAILKILDFV
KLLDQEISKFQGQSPDYDGLCEKTQQFSALVDKVLSNVDVLNDIVIALSVILSETSQIKF
TLLRDNSNEAESNNLDCVDKVTLLENKVQLEPVKDNVPGICPLLPHSSSDPEFEGPADAR
FDVKTAVKVYSPEEYEQLKSEKANLEGELAKCNKIIEETMARLSDMEKKLEDLTSKLADS
EKSNSLNETQLKCMAESYKSLESRKIELENEIEALRSRIDALTAELFDERQSHQEDLVKY
RDLEEKMERYEMERSSILVDEDPDNKSKQVQYLGFSHCYCLRSSFICCVLILMKSTGSTT
I

Transcript Sequence

Transcript ID

Zm00001d028412_T057
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:34034848:34038185:1 gene:Zm00001d028412 gene_biotype:protein_coding transcript_biotype:protein_coding description:Filament-like plant protein 4
Sequence

GAAGGTGAGCAGAAGCTACATGATGTAGTATTTGCAAAAACCAAACAGTGGGAGAAGATA
AAGGCCGAGTTCGAAGCAAAATTACTTGAATTTGAACAGGAACTCATAAGGGCTGGTGCT
GAGAATGATGCACTCACAAGATCACTTCAAGAACGGGCAGAACTATTGATGAAAATTGAT
GAGGAAAAAGGTCAAGCTGAAGCTGAGATCGAAATTTTAAAAAGCACAATTCAATCAGGT
GAAAGGGAGATAAATTCGCTAAAATATGAATTGCATGTTGTCTCCAAAGAGCTTGAAATC
CGCAATGAAGAAAAGAATATGAGTGTGCGCTCAGCTGATGTAGCAACTAAACAGCACCAG
GAAGATGTCAAGAAAATATCAAAACTCGAAGCTGAATGCCAAAGATTACGCGGCCTTGTT
CGAAAGAAGTTACCTGGCCCTGCTGCACTAGCTCAAATGAAAATGGAGGTGGAGAGCTTG
GGTAGAGAATATGGAGACCACAGAGTACGAAGATCCCCTGCAAAGAATTCTAGTTTTCAT
CGGCCTATGTCTCCTGTTCCTGATTATGCAATGGAGAACATACATCACATGCAGAGAGAC
AATGAGTTTCTGACTGCTCGTTTATTAACAATGGAAGAAGAAACCAAGATGCTTAAAGAG
GCATTGGCAAAGAGAAACAGTGAGCTGCAATCTTCAAGAAGCATGTATGCTAAGACAACA
GGAAAGCTCCGAAGCTTGGAAGTTCAAATGTTGACTGGAAACAAACATAAGAGTCCATCA
ACTCCAAACATGGATATTCACTTTGATGGTGCATTTAGCCAAAATGGAAGCAACCCACCT
AGCATGACTTCCATGTCTGAAGATGGGGTAGATGATGAAGGAAGTTGTACAGAATCTTGG
ACCAATGCTCTGGTATCTGAGCCCTGTCAATTCAAAAAAGAGAAGGCAGCCAAGAGCAGC
ACGACAGAAAGCTCCAATAGGTTGGAGCTCATGGATGACTTCTTAGAGATGGAGAGATTA
GCATGTCTGTCTTCTGAAGTTAATGGCAATGGCAGTACTGTTGACAAGATGAAGGTAGAC
AATGTTGGGGCTACTTTTGCTGGCTTTACTGAAAGAGATGGTGTTAAAGATTTGCAGTCA
GCTTCACCAATGTCAGAAACTCCATCTAATAAACAGTGTCTGTCTGAGAAATCTCCGCTT
TTGAATTTCCAGTCAAGAATATCTTCCTTACTGGATTCTGAATCACCAGAGAATAATGCT
GGAAAGGTACTTGATAGCATCAGAAACATTCTAAAGGATATTGAAGATGAGGCAGATTCG
GTGAATGTAAATGGGACTCATCCTTCAGATGGGACCTTAAGTTCAGAGAGCAAATTTGCC
ATGGATCAAGATCTTAAGAATGCCATATTGAAAATTCTAGACTTTGTGAAGTTACTTGAT
CAAGAAATCTCCAAGTTTCAAGGCCAGTCACCTGATTATGATGGACTATGTGAGAAAACA
CAACAGTTCTCTGCATTAGTCGATAAAGTTCTGTCAAACGTTGATGTTCTAAATGATATT
GTCATAGCACTGTCTGTTATCTTGTCAGAAACTAGCCAGATTAAGTTCACATTGTTGAGA
GACAATAGCAATGAAGCAGAAAGTAATAACTTAGATTGTGTTGATAAAGTGACTCTACTT
GAAAATAAGGTGCAGCTTGAGCCAGTAAAAGACAATGTTCCTGGTATCTGCCCACTGTTG
CCTCATTCATCTTCTGATCCTGAGTTTGAGGGGCCTGCTGATGCTAGATTCGATGTTAAG
ACTGCAGTGAAGGTGTACTCGCCGGAGGAATATGAACAACTTAAATCTGAGAAGGCAAAT
TTGGAGGGAGAACTAGCAAAGTGCAACAAAATAATAGAAGAAACAATGGCTAGGTTAAGT
GATATGGAGAAAAAACTGGAAGACCTGACATCTAAGTTGGCTGACAGTGAGAAATCAAAT
AGCTTGAATGAGACACAGTTGAAGTGTATGGCTGAATCCTACAAGTCACTTGAATCAAGG
AAAATTGAATTAGAAAATGAGATAGAAGCGTTACGGTCCAGAATAGATGCTCTAACAGCT
GAACTCTTTGATGAAAGACAGAGTCATCAGGAGGACTTAGTTAAATACAGAGATCTCGAG
GAGAAGATGGAAAGGTATGAGATGGAGAGGAGTTCAATTCTTGTGGATGAGGACCCAGAC
AACAAGTCAAAGCAGGTACAGTACTTAGGATTTTCCCATTGCTATTGTCTACGATCTTCA
TTCATTTGTTGCGTTTTAATCTTGATGAAAAGTACTGGCAGCACAACCATATGATGCGTG
AGTAAGTGCTTCTAGATCAATAAATATATGGCAACACTAGGTCACATAATGTACTCAAGC
ACTAAATCTATTTGAAAGTTTTTCAGGCTTACCTCGAACTGTAGGTTGTTATGCCAAACT
ACTATACTTTTCATGATACCAAGTACTTCGAGCAGCTAAATTTGTATTTGAATGATGACA
GGAGAGAGAGATAGCGGCTGCAGCAGAAAAGCTGGCAGAGTGCCAGGAGACCATATTGAT
TCTTGGCCGTCAGCTGCAAGCTATGCGTCCTCCAGCCGAGTCGCTAGGCTCTTCACCTAA
TCGGCAACGCATGGAGGAGTTTCTGAAGGATGCGGCAGGAACAACCGCAGGAGAATATTT
CCAGAAACCTTCAGGCCAACCTGATACAGACCAGGATATGCTTGGGACAGGAAATGTGTC
TCCGATCAGTGGGTACAAGACACACATGATCCCTTCTGATGCGGACGTTAGCCCTTTCCC
TTCTCCAAACACCTCCAAGCGCCCGAAGCATCGATCGAGATCCTCTTCGTCTTCCTCATT
CACCAACCACCAGTTGCCAGACAAACAGAACCGAGGATTCAGTCGGTTCTTCGCGAAGAG
CAAAGAGTGAAACTATTCCGGATTGGGTGGGATGGTGGTCATGAATTTCTGTAGAGCTAG
TGAGGGATGCTTGCTTGTGCGTTCTCTCAGGTCAGGTGATTCCTTTGGGTTGCTGGAATA
ATACTCAGCTTGCAGTCGAGCGGGTTGTGGCGAGAGTGTGTGGGGGAATATTTAAGTTGT
CAGTCTCTTCTGCTAGAGCTTTTCTGGGTTTCTGTGTGCTCGAAACCTCACTAAAACCTC
ACTGTACATGTGCTTACTTGCTTGAAGGAGCTTGGCTGTTGGTTTGTGT