Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028401_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:1:33647924:33651204:1 gene:Zm00001d028401 gene_biotype:protein_coding transcript_biotype:protein_coding description:Auxin transporter-like protein 3

Sequence

ATGCTGAGCGGCATACTGTTCCAGCTCCTGTACGGGCTGATGGGCAGCTGGACGGCGTAC
CTCATCAGCGTTCTCTACGTGGAGTACCGGGCCAGGAAGGAGAGGGAGAAGGCGGACTTC
AGGAACCATGTCATCCAGTGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGGCACTGGAGG
AACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGCTCGGTCATCCAGCTCATC
GCATGCGCAAGCAACATCTACTACATCAACGACAAGCTGGACAAGCGGACGTGGACGTAC
ATCTTCGGCGCCTGCTGCGCCACGACGGTGTTCATCCCGTCGTTCCACAACTACCGGATC
TGGTCGTTCCTGGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCC
CTCATCCATGGCCAGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTAC
TTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTGGAGATC
ATGCACGCGATGTGGCGGCCGCAGAAGTTCAAGGCGATCTACCTGATGGCGACGCTGTAC
GTGCTGACGCTGACGCTGCCGTCGGCGGCCAGCGTGTACTGGGCGTTCGGCGACCAGCTG
CTGACCCGCTCCAACGCGCTGGCGCTGCTCCCGCGCACGGCGTTCCGCGACGCCGCCGTC
GTGCTCATGCTCGCCCACCAGTTCATCACCTTCGGCTTCGCCTGCACGCCGCTCTACTTC
GTCTGGGAGAAGCTCGTCGGCCTGCACGACTGCCGCAGCCTCTGCAGGCGCGCCGCCGCG
CGCCTCCCCGTCGTCGTCCCCATCTGGTTCCTCGCCATCATCTTCCCCTTCTTCGGGCCC
ATCAACTCCGCCGTCGGCTCCCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCGCTG
GCGCACATGATCACGTTCCGGTCCGCAACAGCCCGTGAGAACGCGATGGAGCCGCCGCCG
CGGCTGCTGGGGCGTTGGACGGGCGCGTACATGATCAACGCGTTCGTGGTGGCGTGGGTG
CTGGTGGTCGGCTTCGGCTTCGGCGGCTGGGCGAGCATGACAAACTTCGTCCGCCAGATC
GACACCTTCGGCCTCTTCACCAAGTGCTACCAGTGCCCGCCGCCACCGCCCCTGCCGTTC
CCCGGCGGCGGCCTCGGCAACATCACGATGCCATTCAACGGCGACGGGCTCCCTCCTACC
CCGGCTCCTTCGCCGGCGCATTACTTCTTCCGCCACCACCGGCATCACAGCCACCACCGC
GGGCTCTGA

Peptide Sequence

PEP ID

Zm00001d028401_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:1:33647924:33651204:1 gene:Zm00001d028401 transcript:Zm00001d028401_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Auxin transporter-like protein 3

Sequence

MLSGILFQLLYGLMGSWTAYLISVLYVEYRARKEREKADFRNHVIQWFEVLDGLLGRHWR
NVGLAFNCTFLLFGSVIQLIACASNIYYINDKLDKRTWTYIFGACCATTVFIPSFHNYRI
WSFLGLVMTTYTAWYLAVASLIHGQVDGVKHSGPTKMVLYFTGATNILYTFGGHAVTVEI
MHAMWRPQKFKAIYLMATLYVLTLTLPSAASVYWAFGDQLLTRSNALALLPRTAFRDAAV
VLMLAHQFITFGFACTPLYFVWEKLVGLHDCRSLCRRAAARLPVVVPIWFLAIIFPFFGP
INSAVGSLLVSFTVYIIPALAHMITFRSATARENAMEPPPRLLGRWTGAYMINAFVVAWV
LVVGFGFGGWASMTNFVRQIDTFGLFTKCYQCPPPPPLPFPGGGLGNITMPFNGDGLPPT
PAPSPAHYFFRHHRHHSHHRGL

Transcript Sequence

Transcript ID

Zm00001d028401_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:33647924:33651204:1 gene:Zm00001d028401 gene_biotype:protein_coding transcript_biotype:protein_coding description:Auxin transporter-like protein 3

Sequence

GGTGGCTCAGGTGCTCCTGACCCTGCCCTACTCGTTCTCGCAACTGGGGATGCTGAGCGG
CATACTGTTCCAGCTCCTGTACGGGCTGATGGGCAGCTGGACGGCGTACCTCATCAGCGT
TCTCTACGTGGAGTACCGGGCCAGGAAGGAGAGGGAGAAGGCGGACTTCAGGAACCATGT
CATCCAGTGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGGCACTGGAGGAACGTCGGCCT
GGCCTTCAACTGCACGTTCCTGCTCTTCGGCTCGGTCATCCAGCTCATCGCATGCGCAAG
CAACATCTACTACATCAACGACAAGCTGGACAAGCGGACGTGGACGTACATCTTCGGCGC
CTGCTGCGCCACGACGGTGTTCATCCCGTCGTTCCACAACTACCGGATCTGGTCGTTCCT
GGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCCCTCATCCATGG
CCAGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGC
CACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTGGAGATCATGCACGCGAT
GTGGCGGCCGCAGAAGTTCAAGGCGATCTACCTGATGGCGACGCTGTACGTGCTGACGCT
GACGCTGCCGTCGGCGGCCAGCGTGTACTGGGCGTTCGGCGACCAGCTGCTGACCCGCTC
CAACGCGCTGGCGCTGCTCCCGCGCACGGCGTTCCGCGACGCCGCCGTCGTGCTCATGCT
CGCCCACCAGTTCATCACCTTCGGCTTCGCCTGCACGCCGCTCTACTTCGTCTGGGAGAA
GCTCGTCGGCCTGCACGACTGCCGCAGCCTCTGCAGGCGCGCCGCCGCGCGCCTCCCCGT
CGTCGTCCCCATCTGGTTCCTCGCCATCATCTTCCCCTTCTTCGGGCCCATCAACTCCGC
CGTCGGCTCCCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCGCTGGCGCACATGAT
CACGTTCCGGTCCGCAACAGCCCGTGAGAACGCGATGGAGCCGCCGCCGCGGCTGCTGGG
GCGTTGGACGGGCGCGTACATGATCAACGCGTTCGTGGTGGCGTGGGTGCTGGTGGTCGG
CTTCGGCTTCGGCGGCTGGGCGAGCATGACAAACTTCGTCCGCCAGATCGACACCTTCGG
CCTCTTCACCAAGTGCTACCAGTGCCCGCCGCCACCGCCCCTGCCGTTCCCCGGCGGCGG
CCTCGGCAACATCACGATGCCATTCAACGGCGACGGGCTCCCTCCTACCCCGGCTCCTTC
GCCGGCGCATTACTTCTTCCGCCACCACCGGCATCACAGCCACCACCGCGGGCTCTGATG
AGAGACGATGAAATGAACCCGGCTTACCACCAGTAGTGCGTGCGTGGCACACTGCTGCTT
TAGTTTGAGCTGATCCCTTAGTTAAGTCTAGCTTAATTAGCACCTGCATGCAGCATCTTC
GTTCTCTCCTCTAGCTTGCTGGTGTCGAACGCATGCTTTCCCGGTTTCAGTGACTTTAGA
GACCCTGCCTGAGCCTGACACGAGGGGAGTATCACTGTATC