Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028398_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:1:33451486:33454793:1 gene:Zm00001d028398 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycosyl hydrolase family 10 protein
Sequence

ATGAAGATCACCGTGGCGAGCGGGTCGCTGCAGCCGTTCACCACGGACCAGTGGGCGATG
CACCAGCAGGATACCATCCGGAAGAGGAGGAAGCGCGTGGCGACCATCCACGTGGCCGAC
CCGCAGGGCGCCCGCGTGGTGGGCGCGTCCGTGTCGGTGCAGCAGACGGCCAAGGACTTC
CCGATCGGTTCGGCGATCGCGTCCACCATCCTTGGGAACCAGGCGTACCAGCAGTGGTTC
GTGGACCGGTTCAACGCGGCGGTGTTCGAGGACGAGCTCAAGTGGTACTCGACGGAGCCC
ATGTCGGGGCAGCTGCGCTTCGACGTGCCGGACCAGATGCTGGCGTTCGTGCGGTCGCAC
CGCGTGATGGTGCGCGGCCACAACATCTTCTGGGAGAACCAGGACGCGACGCCCCGGTGG
GTGAAGAACCTGACGGCGGACGACCTCCGCGCCGCCGTCAACACGCGCATCCAGAGCCTC
ATGACCCGCTACCGCGGCGAGTTCGCGCACTGGGACGTGAACAACGAGATGCTGCACTAC
AACTTCTACGAGCAGCGGCTGGGGCCCAACGCGTCCGCGGAGTTCTTCAGCGTGGCGCAG
GACGCCGACCCGCTGGCCACGCTCTTCATGAACGAGTACAACGTCATCGAGACCTGCGAC
GACCCCTTCTCCACCGTCGACACGTACGTGTCCAAGCTCAAGGACCTCCGCTCCGCCGGC
GCCATCCTGGAAGGGATCGGCCTGGAGGGACACTTCTCCAAGCCCAACATCCCGCTCATG
AGGGCCATACTCGACAAGCTCGCCACCCTGGGGCTGCCCATCTGGTTCACCGAGATCGAC
ATCAGCAACAAGTTCGACGCGCAGACGCAGGCCGCCTACCTGGAGCAGGTGCTGCGGGAG
GCATACTCGCACCCGGCCGTCAGCGGAGTCATGCTGTGGACGGCGCTGCACCCCAGCGGG
TGCTACCAGATGTGCCTCACGGACTGGAACCTCAGCAACCTGCCCACGGGGGACGTGGTC
GACCGCCTGCTCAACGAGTGGCGGACGCTGCAGGCGGCCGGCCAGACCGACGCGCACGGC
GCCTACAGCTTCACCGGCTACCTGGGGGAGTACGTCCTCACTGTCAGCTACAACAACAGG
ACGACGCAATCCACCTTCTCGCTGTCGCCGGGAGACGAGACCAGGCACATCAACGTTCAG
ATGTGA

Peptide Sequence

PEP ID

Zm00001d028398_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:1:33451486:33454793:1 gene:Zm00001d028398 transcript:Zm00001d028398_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycosyl hydrolase family 10 protein
Sequence

MKITVASGSLQPFTTDQWAMHQQDTIRKRRKRVATIHVADPQGARVVGASVSVQQTAKDF
PIGSAIASTILGNQAYQQWFVDRFNAAVFEDELKWYSTEPMSGQLRFDVPDQMLAFVRSH
RVMVRGHNIFWENQDATPRWVKNLTADDLRAAVNTRIQSLMTRYRGEFAHWDVNNEMLHY
NFYEQRLGPNASAEFFSVAQDADPLATLFMNEYNVIETCDDPFSTVDTYVSKLKDLRSAG
AILEGIGLEGHFSKPNIPLMRAILDKLATLGLPIWFTEIDISNKFDAQTQAAYLEQVLRE
AYSHPAVSGVMLWTALHPSGCYQMCLTDWNLSNLPTGDVVDRLLNEWRTLQAAGQTDAHG
AYSFTGYLGEYVLTVSYNNRTTQSTFSLSPGDETRHINVQM

Transcript Sequence

Transcript ID

Zm00001d028398_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:33451486:33454793:1 gene:Zm00001d028398 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycosyl hydrolase family 10 protein
Sequence

ACGACCCGCGTGTAGGTGTAGCACTCTCCATCCTCATTGCTAACTGCTCGATTCTCCTCC
ATACCCTTGTGCACGCACAGCCGACACTGCAGTGAGGAACTTGAACAGAGGAAGAAGCCC
GGCTGAGCGCTCTCTCGTCTAGCTAGCTGCGCTGCGGCGATGAAGATGCATCGCTTCGCT
CTGCGTGGCCTGGGGTTTCTCGTCCTGTGGATGCTGCATTGCGGAAGCGAGCTCGCCGCG
GCGGTGCCTCCAGGTCAGTGGCTCGCACAGTCGCACTCCCCCTTTCTACCTCTCTCTCGT
ACTTCGTTTTTTTTCCTGCGAGTTATCATATCCATCGTTTGAGCTTCCTGGTGACATGCA
GATGGCTGGTACGATTACTCCGCCTACACCGACGTAAGTCTCCATGCACCGAATGAAGCA
TTCTTTTTTCTTCCAGAATCGCCAAGCTTTTATCTGCACACGTCATGCATGAGTAACACC
CAGCAGCAAATGCAAGTTCGTTTCGTTCATTATTAACCGTTCAAACTATATGCGTGTATC
TCTGATGGTTCTTGCATCTTTATCAAACACACCATTTCACCCGGGTGACCACTAAATAAC
CAATGCGGTCGGCAGCAGAGAGAGCCGGGGAAGATGGCGAAGCTCAAAGCCGCCATTGTT
GGGACCACAAAACAAATGCTTCCTCTTCCCCACAAGGCCACAAATCCACAATGCACATGA
TCCTCCCTCACTCTCTCCGGTCCGTCCGGCCGGCCACTCCAGTTTTGTTCCCATGCGTGC
GCTGGGACACCTCAGCGCCCCCACCAGTACAGTACCTACCACACTACCAGAGATGCTAGC
AGCCAATAGACATTATCACACGGAGCGAGCAAGTGACAAGTACTATACTACTACACTTCT
CGTCTTCTCGATAGTATTCTAAGCTCCATCTGGAATGGTTGCAAGCATCGTGATCATCAT
GTCCCTCTTTAATTTATCAAGCCCTGCACGCGCGCGGCTAACATGCGGTTCTGGGCCGAC
CAAGTGACCAACTAACGCAGCGCAAGCAACAGTGAGCCTTCGCGTCGCGCGCGTGTCATC
TGTCGCTGTCACGTCCACACCTATCATACGCTTGAGCTTTGATAGAATAAAATAAACTAT
GCGCGGCGCAGAACATGAACAACAGAGTAGAGCGCGGCGTGCGCTAACTCCAGGTTTATT
TGCGTGGCGTCCAGTGCAGGGGCCAGCCGGAGCCGGCGCTGTACAACGGAGGCATTCTCA
AGTTCGGCAGCAGCGGCGGAGACCCGGACGGATACCGCACGACGGAGACCGGCGTCTTCT
CCCCGGCGTTCGTGGTGTACAACCTCAACAAGACCACCATGTACACCTTCTCATGTGAGC
TCTCCTACCCTTTTTGCAGTCATGTAGTACTACTACTACGCTCGTGCATGTGAGCTTCAA
TAATTCTCGATCCCTGTCACACGCATGCATCAGGCTGGGTGAAGCTGGAAGGCGCGTACT
CGGCTCTGATCACCGCGAGGCTGGCGCCGGACAACACCGGCGCCAGGTGCATCGCCACGG
TCGTTGCCAGGAGCGACTGCTGGGCCTTCGTCAAGGGCGGATTCGTCCTGGACTGGCCGA
CGCAGACCTCGGTCATCTTCTTTCAGAATGCTGACAAGACGCCCATGAAGATCACCGTGG
CGAGCGGGTCGCTGCAGCCGTTCACCACGGACCAGTGGGCGATGCACCAGCAGGATACCA
TCCGGAAGAGGAGGAAGCGCGTGGCGACCATCCACGTGGCCGACCCGCAGGGCGCCCGCG
TGGTGGGCGCGTCCGTGTCGGTGCAGCAGACGGCCAAGGACTTCCCGATCGGTTCGGCGA
TCGCGTCCACCATCCTTGGGAACCAGGCGTACCAGCAGTGGTTCGTGGACCGGTTCAACG
CGGCGGTGTTCGAGGACGAGCTCAAGTGGTACTCGACGGAGCCCATGTCGGGGCAGCTGC
GCTTCGACGTGCCGGACCAGATGCTGGCGTTCGTGCGGTCGCACCGCGTGATGGTGCGCG
GCCACAACATCTTCTGGGAGAACCAGGACGCGACGCCCCGGTGGGTGAAGAACCTGACGG
CGGACGACCTCCGCGCCGCCGTCAACACGCGCATCCAGAGCCTCATGACCCGCTACCGCG
GCGAGTTCGCGCACTGGGACGTGAACAACGAGATGCTGCACTACAACTTCTACGAGCAGC
GGCTGGGGCCCAACGCGTCCGCGGAGTTCTTCAGCGTGGCGCAGGACGCCGACCCGCTGG
CCACGCTCTTCATGAACGAGTACAACGTCATCGAGACCTGCGACGACCCCTTCTCCACCG
TCGACACGTACGTGTCCAAGCTCAAGGACCTCCGCTCCGCCGGCGCCATCCTGGAAGGGA
TCGGCCTGGAGGGACACTTCTCCAAGCCCAACATCCCGCTCATGAGGGCCATACTCGACA
AGCTCGCCACCCTGGGGCTGCCCATCTGGTTCACCGAGATCGACATCAGCAACAAGTTCG
ACGCGCAGACGCAGGCCGCCTACCTGGAGCAGGTGCTGCGGGAGGCATACTCGCACCCGG
CCGTCAGCGGAGTCATGCTGTGGACGGCGCTGCACCCCAGCGGGTGCTACCAGATGTGCC
TCACGGACTGGAACCTCAGCAACCTGCCCACGGGGGACGTGGTCGACCGCCTGCTCAACG
AGTGGCGGACGCTGCAGGCGGCCGGCCAGACCGACGCGCACGGCGCCTACAGCTTCACCG
GCTACCTGGGGGAGTACGTCCTCACTGTCAGCTACAACAACAGGACGACGCAATCCACCT
TCTCGCTGTCGCCGGGAGACGAGACCAGGCACATCAACGTTCAGATGTGATGCGCCAACA
TTATATTTAGGGCTCCTCGGATCGGACTACTTATTACTAGCTGATGTAGTGATTGTTGTG
GAAGAAGATTGCACAGTCAATCTATGTTTCTTACTTGTCCTGTGTCAAATTTAGTGTAAG
AACTGGCGTCCTTGACAGCTGGTATGTAAAATAGTATGACCACCACTATTACTATATATA
ACAAGAGACTTCACTC