Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d028369_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:1:32354777:32360308:1 gene:Zm00001d028369 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence	ATGGCCTCCGCCGCCGCCGTCATCGCCTCGCCGGCCCCCGGCGCCGCCGCGGCCGAGCCC GCCGCCTGGCTCGTCGACGAGCGCGACGGCTTCATCACCTGGCTGCGCGGCGAGTTCGCC GCCGCCAACGCCATCGTCGACCACCTCATCTTCCACCTCCGCTCCATCAGCGAGCCGGGC GAGTACGACCACGTCTTCTCTCTCGTCCAGCAGCGCCGCCACCACTGGCCGCACGTGATC CACATGCAGCAGTTCTTCCCCGTCAGCGACATCGCCTTCGCGCTCCAGCAAGCCAGCTGG CGCCGCCACGCGCCGCCGGCCCAGGCGCTCGGGGCTGGCGCGTCGCCGGCCGCGCTCCCG CCGCCGCCTCCTCGCCGCGCCTCGTTCTCGCAGTCCCATCACTCCCACCAGCACCATCGC CACGGCGCCCACTACCGCCCCGATCCAGCGCGCGGCGCCGCCACTGCGGCGACTGGATCC GAGAAAGATGGACGTGAAGTTCATAATAACAAGGAAGGGAGGGGGCTGAAAGAAGCGGGG AATGTCGTCGATACTAAAAGTTTGCGGTTGGATTCTCCTATAACTGATGAAGGTGAGGAA AAATCAAAGCTGCAAGCTGTTTCTGAAGAAAGTAGCAAAATGGTTGCAACCCCTGTAGAG TATTCAACCAATGAGATCATTGATGGCAGCATGGTTAATACTGTTGAAGGGCTCAAGGTT TATGAAGGATTACTAAATGTAACCGAGGCAAATAAGATCCTTTCCTTAGTCAATGAAACA AGAGCCTCTTACCGGCGAGGGGGGCTTGAAGCTAGACAGAAGGTTATTATTGCTAAAAGA CCAATGAAGGGTCATGGACGGGAAATTGTTCAGCTGGGTGTTCCTATTATTGATGGCCCT CCTGATGATGAAAATCTAAGAGAGACAAGGGTGGAGGCGATTCCTGGGCTGCTGAATGAT CTGTTTGATCGCTTGTCTCAGCAGGAAATTATACCCTTCAAGCCAGATTATTGTGTCATT GACATCTTCAATGAGGGAGACTATTCTCATCCTCACCAATCCCCTTCTTGGTATGGTAGA CCTCTTTGTACCCTCTGCTTAACAGATTGTGATATGGTGTTTGGCCGTTATATATCAGGA GAAAAAGGCGATCATAGAGGTCCTCTGAAGCTCTCGCTCGCAACTGGGTCACTTCTACTC ATGCAAGGGAGAAGTATTGACTGTGCAAAGCGAGCTATTCCTGCTACACGCAAGCAGAGA GTCATACTGAATTTTGGAAAGTCCGTAGCAAGAAAGCACATCCCAGCTGAAAGTGCCTGG TCTACTCCATTAACACCTCCTATGCCCTGGGGTCAGTCATCAAGGCCAGTTAACGGCTCC CGCCATCCCCAAAGTCCTAAACACTATGGGTATGCTCCAATCAGCGGTGTACTTCCAGCA CCACCAGTTGGAGCTCATCACGTCCCACCGTCTGATGGGATGCAGCCACTATTTGTAGCC CCTGCTCCTATTTCTGCTGCAGCCATACCTTTCACGCCAACTGTTCCCTTGCAAAATACA TCAGCTGCTTGGATACAAGAAGTTACTCCAAGGCCTGCTCCGCCACGATTCCCTGGTCCT GGTACGGGGGTCTTCCTTCCTCCGGGATCAGGCCACCCTCTGCCTCATCAGATGATGCCG GCTTCTCATGGCCATGGCGAACCCAACTCTCCACAAGGTTCATCCGCTTACCTGCATAGT AAGGTCAATGGCAAGGAGACATCTAATGGCAATCTTTCTCCTAAGAACTCGCCGAGAAAG ACATCTTGCACAGCCGAGGAGAAACCAGAATGCAATGGGAGCTTAAATGGTGGTGGCGGC TCTGCGGATGAGAAGTCAACTGTAGGTATGGAGCAGCAGAATGGTGTTCAGAAGAATGTT GGGAGTAGCAAGGTCCAGCCACATGGACATGCAACTGAATAG

Peptide Sequence

PEP ID	Zm00001d028369_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:1:32354777:32360308:1 gene:Zm00001d028369 transcript:Zm00001d028369_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence	MASAAAVIASPAPGAAAAEPAAWLVDERDGFITWLRGEFAAANAIVDHLIFHLRSISEPG EYDHVFSLVQQRRHHWPHVIHMQQFFPVSDIAFALQQASWRRHAPPAQALGAGASPAALP PPPPRRASFSQSHHSHQHHRHGAHYRPDPARGAATAATGSEKDGREVHNNKEGRGLKEAG NVVDTKSLRLDSPITDEGEEKSKLQAVSEESSKMVATPVEYSTNEIIDGSMVNTVEGLKV YEGLLNVTEANKILSLVNETRASYRRGGLEARQKVIIAKRPMKGHGREIVQLGVPIIDGP PDDENLRETRVEAIPGLLNDLFDRLSQQEIIPFKPDYCVIDIFNEGDYSHPHQSPSWYGR PLCTLCLTDCDMVFGRYISGEKGDHRGPLKLSLATGSLLLMQGRSIDCAKRAIPATRKQR VILNFGKSVARKHIPAESAWSTPLTPPMPWGQSSRPVNGSRHPQSPKHYGYAPISGVLPA PPVGAHHVPPSDGMQPLFVAPAPISAAAIPFTPTVPLQNTSAAWIQEVTPRPAPPRFPGP GTGVFLPPGSGHPLPHQMMPASHGHGEPNSPQGSSAYLHSKVNGKETSNGNLSPKNSPRK TSCTAEEKPECNGSLNGGGGSADEKSTVGMEQQNGVQKNVGSSKVQPHGHATE

Transcript Sequence

Transcript ID	Zm00001d028369_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:32354777:32360308:1 gene:Zm00001d028369 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence	CACCACCAGTCCACCATTCCAGCATCATCACCACCACCCGAGACAAAAAAATAAAAAAAA CCCAACAACACTGTAACGAGAATATACGGCAAAACCCTAGATCTCTCTCTCCTCTCGGCA TTGCTGGCTGGGGTGTGCGGCGGCCCGCAGTGGTGAGGGACGCACGGCGATGGCCTCCGC CGCCGCCGTCATCGCCTCGCCGGCCCCCGGCGCCGCCGCGGCCGAGCCCGCCGCCTGGCT CGTCGACGAGCGCGACGGCTTCATCACCTGGCTGCGCGGCGAGTTCGCCGCCGCCAACGC CATCGTCGACCACCTCATCTTCCACCTCCGCTCCATCAGCGAGCCGGGCGAGTACGACCA CGTCTTCTCTCTCGTCCAGCAGCGCCGCCACCACTGGCCGCACGTGATCCACATGCAGCA GTTCTTCCCCGTCAGCGACATCGCCTTCGCGCTCCAGCAAGCCAGCTGGCGCCGCCACGC GCCGCCGGCCCAGGCGCTCGGGGCTGGCGCGTCGCCGGCCGCGCTCCCGCCGCCGCCTCC TCGCCGCGCCTCGTTCTCGCAGTCCCATCACTCCCACCAGCACCATCGCCACGGCGCCCA CTACCGCCCCGATCCAGCGCGCGGCGCCGCCACTGCGGCGACTGGATCCGAGAAAGATGG ACGTGAAGTTCATAATAACAAGGAAGGGAGGGGGCTGAAAGAAGCGGGGAATGTCGTCGA TACTAAAAGTTTGCGGTTGGATTCTCCTATAACTGATGAAGGTGAGGAAAAATCAAAGCT GCAAGCTGTTTCTGAAGAAAGTAGCAAAATGGTTGCAACCCCTGTAGAGTATTCAACCAA TGAGATCATTGATGGCAGCATGGTTAATACTGTTGAAGGGCTCAAGGTTTATGAAGGATT ACTAAATGTAACCGAGGCAAATAAGATCCTTTCCTTAGTCAATGAAACAAGAGCCTCTTA CCGGCGAGGGGGGCTTGAAGCTAGACAGAAGGTTATTATTGCTAAAAGACCAATGAAGGG TCATGGACGGGAAATTGTTCAGCTGGGTGTTCCTATTATTGATGGCCCTCCTGATGATGA AAATCTAAGAGAGACAAGGGTGGAGGCGATTCCTGGGCTGCTGAATGATCTGTTTGATCG CTTGTCTCAGCAGGAAATTATACCCTTCAAGCCAGATTATTGTGTCATTGACATCTTCAA TGAGGGAGACTATTCTCATCCTCACCAATCCCCTTCTTGGTATGGTAGACCTCTTTGTAC CCTCTGCTTAACAGATTGTGATATGGTGTTTGGCCGTTATATATCAGGAGAAAAAGGCGA TCATAGAGGTCCTCTGAAGCTCTCGCTCGCAACTGGGTCACTTCTACTCATGCAAGGGAG AAGTATTGACTGTGCAAAGCGAGCTATTCCTGCTACACGCAAGCAGAGAGTCATACTGAA TTTTGGAAAGTCCGTAGCAAGAAAGCACATCCCAGCTGAAAGTGCCTGGTCTACTCCATT AACACCTCCTATGCCCTGGGGTCAGTCATCAAGGCCAGTTAACGGCTCCCGCCATCCCCA AAGTCCTAAACACTATGGGTATGCTCCAATCAGCGGTGTACTTCCAGCACCACCAGTTGG AGCTCATCACGTCCCACCGTCTGATGGGATGCAGCCACTATTTGTAGCCCCTGCTCCTAT TTCTGCTGCAGCCATACCTTTCACGCCAACTGTTCCCTTGCAAAATACATCAGCTGCTTG GATACAAGAAGTTACTCCAAGGCCTGCTCCGCCACGATTCCCTGGTCCTGGTACGGGGGT CTTCCTTCCTCCGGGATCAGGCCACCCTCTGCCTCATCAGATGATGCCGGCTTCTCATGG CCATGGCGAACCCAACTCTCCACAAGGTTCATCCGCTTACCTGCATAGTAAGGTCAATGG CAAGGAGACATCTAATGGCAATCTTTCTCCTAAGAACTCGCCGAGAAAGACATCTTGCAC AGCCGAGGAGAAACCAGAATGCAATGGGAGCTTAAATGGTGGTGGCGGCTCTGCGGATGA GAAGTCAACTGTAGGTATGGAGCAGCAGAATGGTGTTCAGAAGAATGTTGGGAGTAGCAA GGTCCAGCCACATGGACATGCAACTGAATAGAGTGGGACTTATAGTACATAGACAACAGA AAACTGAAGAGACGAGGAGTTGAATTTTGGGCCGTGAATTTGCGGTAGTGCGCAGAGCTC AGCAGAGGTCTTTGCTGGCACTCTCTTGTCCCTGACAAGAATCATCGTGTCAAGTTCTCG AGACGGAAAACATTTGTCCTAAACTTTGTAGCTGCACTGTTGCAAATCTAGATTATCGAC ATTGCCTCGGGTTATCATCTGCTATCAGAGTCGTGGGCAGTGAAAACCATTTCTGATGGT TTATGTTGCCCAAATATTATCGACCTAGTACATCTGAAATGGGAAAAAATGTGGACGAAA TTTCTTGC