Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028358_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:1:31888203:31908777:1 gene:Zm00001d028358 gene_biotype:protein_coding transcript_biotype:protein_coding description:Anaphase-promoting complex subunit 6
Sequence

ATGAGGGAGGAGGCGCTGGAGCGGCTGCGCGGGGTGGTACGGGACAGCGCCGGGAAGCAC
CTCTACACGTCGGCCATCTTCCTCGCCGACAAGGTGGCGGCGGCCACGGGGGACCCTGGC
GACGTCTACATGCTCGCGCAGGCACTCTTCCTCGGCCGTCAATTCCGTCACGCGCTCCAC
CTCCTCAACAATTCTCGCCTGCTCCGCGACCTCCGGTTCAGATTCCTCGCCGCCAAGTGC
CTCGAGGAGTTGAAAGAGTGGCATCAGTGTTTGTTGATGCTTGGGGATGCAAAAGTGGAT
GAGCATGGAAATGTCCTTGATCATGATGATGACAGTGATATTTATTTTGATAAGGACGCG
GAAGATCATGAGATCAATATCAAATCAGCTCTATGTTTCTTACGTGGTAAGGCATATGAA
GCACTGGACAACCGTGATCTTGCTCGCCAATGGTACAAGGCAGCTGTTAAAGCCGATCCT
CTGTGTTATGAGGCTCTCGAACGTCTTGTTGATAATTATATGTTGACATGTGAGGAAGAA
TCTGAGTTATTATCCTCTCTGCAATTTGGGGAAGAAGATGGGTGGCTATCATCATTCTAC
TCGTGTTTGATCACGAAGCATGAAAAAGAATATTTAGTTGAAGCAAAATTCAAGAAACTT
GAAGAAGAGGCCTGCAATATTTTGTCCTCGAGTTCTGGTGAAACAATGAAAAACAACATT
GATGTTTTGGTTTGCAAAGCTGAATACTACCACCAGAGTGGAGAGTACCAAAAGTGTTTT
AAACTCACATCCTCGTTACTTGAGAGAGACCCTTTCCATCTAAAGTGCACATTAGTTCAT
TTGGCAACTGCAATGGAGCTTGGTCATTCCAATGATCTTTATCTTTTAGCATGCAACTTA
GTGAAGGATTATCCTGAAAAAGCTCTTTCATGGTTTGCTGTCGGTTGCTATTACTACTGT
ATTAAGAAGTATGATCAAGCGCGAAGATACTTCGGCAAAGCTACAGGTTTAGATGGGACG
TTTCCTCCTGCTTGGATTGGTACAGGCATTGCCTATGCTGCTCAAGAGGAAGGTGACCAA
GCAATGGCTGCATTTCGGACGGCAGCTCGGTTATTTCCTGGATGTCATCTGCCAACTTTA
TACATGGGCATGCAATATGTGCGAATGCACAATTTCAAACTTGCAGAGCAGTTCTTCACA
CAAGCAAAATCCATCTGCCCATCTGATCCACTTATTTACAATGAGTTGGGGGTTGTTGCG
TATAATATGAAGGAGTACCGAAAAGCAGTTCAGTTGTTTGAGTTAACATTGGACCATACT
TCATCCTCTCTGAATGAAATGTGGGAACCAACATTGGTGAATCTTGGGCATGCACTTCGG
AAACTCAAGGAATATCAGAAAGCAGTATCATGTTATGAAAAGGCACTCACTTTTCCAACC
AAAAGTTTGAGTGCATTTGCTGGTCTTGCTTATAGTTACCATCTTATGGATAATTTTGAG
GCTGCCATAAATTATTACCACAAGGCTCTATGGTTGAAACCAGACGACCAGTTTTGCACA
GAGATGCTAACATATGCTCTTGAGTCCATCTGTCAAAGCACTGCTCGTAGAAGGCCTAGT
TGA

Peptide Sequence

PEP ID

Zm00001d028358_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:1:31888203:31908777:1 gene:Zm00001d028358 transcript:Zm00001d028358_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Anaphase-promoting complex subunit 6
Sequence

MREEALERLRGVVRDSAGKHLYTSAIFLADKVAAATGDPGDVYMLAQALFLGRQFRHALH
LLNNSRLLRDLRFRFLAAKCLEELKEWHQCLLMLGDAKVDEHGNVLDHDDDSDIYFDKDA
EDHEINIKSALCFLRGKAYEALDNRDLARQWYKAAVKADPLCYEALERLVDNYMLTCEEE
SELLSSLQFGEEDGWLSSFYSCLITKHEKEYLVEAKFKKLEEEACNILSSSSGETMKNNI
DVLVCKAEYYHQSGEYQKCFKLTSSLLERDPFHLKCTLVHLATAMELGHSNDLYLLACNL
VKDYPEKALSWFAVGCYYYCIKKYDQARRYFGKATGLDGTFPPAWIGTGIAYAAQEEGDQ
AMAAFRTAARLFPGCHLPTLYMGMQYVRMHNFKLAEQFFTQAKSICPSDPLIYNELGVVA
YNMKEYRKAVQLFELTLDHTSSSLNEMWEPTLVNLGHALRKLKEYQKAVSCYEKALTFPT
KSLSAFAGLAYSYHLMDNFEAAINYYHKALWLKPDDQFCTEMLTYALESICQSTARRRPS

Transcript Sequence

Transcript ID

Zm00001d028358_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:31888203:31908777:1 gene:Zm00001d028358 gene_biotype:protein_coding transcript_biotype:protein_coding description:Anaphase-promoting complex subunit 6
Sequence

GCAGCCGCCGAGCCGAGCTCCAAGCGGAGGAGAATAGGAGAGACCACCGATCCGCCGTCG
GAGATGAGGGAGGAGGCGCTGGAGCGGCTGCGCGGGGTGGTACGGGACAGCGCCGGGAAG
CACCTCTACACGTCGGCCATCTTCCTCGCCGACAAGGTGGCGGCGGCCACGGGGGACCCT
GGCGACGTCTACATGCTCGCGCAGGCACTCTTCCTCGGCCGTCAATTCCGTCACGCGCTC
CACCTCCTCAACAATTCTCGCCTGCTCCGCGACCTCCGGTTCAGATTCCTCGCCGCCAAG
TGCCTCGAGGAGTTGAAAGAGTGGCATCAGTGTTTGTTGATGCTTGGGGATGCAAAAGTG
GATGAGCATGGAAATGTCCTTGATCATGATGATGACAGTGATATTTATTTTGATAAGGAC
GCGGAAGATCATGAGATCAATATCAAATCAGCTCTATGTTTCTTACGTGGTAAGGCATAT
GAAGCACTGGACAACCGTGATCTTGCTCGCCAATGGTACAAGGCAGCTGTTAAAGCCGAT
CCTCTGTGTTATGAGGCTCTCGAACGTCTTGTTGATAATTATATGTTGACATGTGAGGAA
GAATCTGAGTTATTATCCTCTCTGCAATTTGGGGAAGAAGATGGGTGGCTATCATCATTC
TACTCGTGTTTGATCACGAAGCATGAAAAAGAATATTTAGTTGAAGCAAAATTCAAGAAA
CTTGAAGAAGAGGCCTGCAATATTTTGTCCTCGAGTTCTGGTGAAACAATGAAAAACAAC
ATTGATGTTTTGGTTTGCAAAGCTGAATACTACCACCAGAGTGGAGAGTACCAAAAGTGT
TTTAAACTCACATCCTCGTTACTTGAGAGAGACCCTTTCCATCTAAAGTGCACATTAGTT
CATTTGGCAACTGCAATGGAGCTTGGTCATTCCAATGATCTTTATCTTTTAGCATGCAAC
TTAGTGAAGGATTATCCTGAAAAAGCTCTTTCATGGTTTGCTGTCGGTTGCTATTACTAC
TGTATTAAGAAGTATGATCAAGCGCGAAGATACTTCGGCAAAGCTACAGGTTTAGATGGG
ACGTTTCCTCCTGCTTGGATTGGTACAGGCATTGCCTATGCTGCTCAAGAGGAAGGTGAC
CAAGCAATGGCTGCATTTCGGACGGCAGCTCGGTTATTTCCTGGATGTCATCTGCCAACT
TTATACATGGGCATGCAATATGTGCGAATGCACAATTTCAAACTTGCAGAGCAGTTCTTC
ACACAAGCAAAATCCATCTGCCCATCTGATCCACTTATTTACAATGAGTTGGGGGTTGTT
GCGTATAATATGAAGGAGTACCGAAAAGCAGTTCAGTTGTTTGAGTTAACATTGGACCAT
ACTTCATCCTCTCTGAATGAAATGTGGGAACCAACATTGGTGAATCTTGGGCATGCACTT
CGGAAACTCAAGGAATATCAGAAAGCAGTATCATGTTATGAAAAGGCACTCACTTTTCCA
ACCAAAAGTTTGAGTGCATTTGCTGGTCTTGCTTATAGTTACCATCTTATGGATAATTTT
GAGGCTGCCATAAATTATTACCACAAGGCTCTATGGTTGAAACCAGACGACCAGTTTTGC
ACAGAGATGCTAACATATGCTCTTGAGTCCATCTGTCAAAGCACTGCTCGTAGAAGGCCT
AGTTGAGGTTTGCTAATCGCAACATGCTAGGATATTCTTTACCTTACAAGACTAGTAGCC
AAATTATATGTAAATTTGTTGTTGTACAATATGTAATTGCTCAAGTTCATTTCAGCCACT
TGAGGCTGATCGCATTGTAAAGCCAAAGTTTTCGATCTTTTAATTTTTATACACCCCCTC
CGTTGTCATATAATAATTAAGTTCGTCC