Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d028339_T043
CDS Infomation	cds chromosome:B73_RefGen_v4:1:31208804:31218839:-1 gene:Zm00001d028339 gene_biotype:protein_coding transcript_biotype:protein_coding description:Whole genome shotgun sequence of line PN40024 scaffold_7.assembly12x (Fragment)
Sequence	ATGCCGGGGGTGGCGTCAGCAGCGGGATCGGGGATCTGGTCGCGCCGGCGGGACGAGATC ACGTTCGATCGCCTTCAGAAGGAACTCCTCAAATTGGATAAGCAAACTCTCATTGAACAA GCACGCAAGAATTTCTACTGCTCAAAGTGCAATGGGTTGCTTCTGGAAAGTTTTGCAAAA ATTGTTATATATGGGAAGTCATTGCAGCAAGAAGCTTCAGATATTTGTCGCCTGAGGACA GCTATTGAATCAAGAGTTACGCAAGGAGAGCAAGATGGGGCTCAGGACCCATCAATTCAT CCCTGGGGAGGCCTTTCAACCACAAAAGATGGCTTCCTTACACTTCTTGACTGCTTTATA AAAGCAGAATCATTATGTGTGCTTCAGAATGTATTTGACAATGCACGGGCAAGAGAAAGG GAACGGGAAATGCTTTATCCTGATGCCTGTGGTGCAGGTGGCAGAGGATGGATCAGCCAA GGGATGGCTAACTATAGGGGTCATGGAATAAGAGAAATGTGTGCTCTACACACTGCCCAC CTTTCATGTGATACACTCGTGGATTTCTGGTCAGCGCTTGGTGAAGAAACTAGGTCATCT CTTCTGCGGATGAAGGAGGAGGATTTCATTGAAAAACTTATGTACAGGTTTGATAGCAAG AGATTTTGCCGAGAGTGTCGAAGGAACGTTATCCGCGAATTCAAGGAGCTGAAGGAACTA AAGCGCATGCGAAGGGAACCTCACTGCACCAGTTGGTTTTGTGTTGCAGATACTGCGTTT CAGTGTGAGGTGTTTGAGGATGCTGTCATAGTTGATTGGCGCCAGTGTTTATCAGAGCCA GATGAATCTTATGACCACTTTGAATGGGCTATTGGAACAGATGAAGGAGAATCCGATATT TTTGGCTTTGAAAATGTTGGAATGAATGCACAAGTCCACAGAAATGGAATCGATCTTGAT CAGTTTGAGGACTACTTCATAACACTGCGAGCTTGGAGGCTTGATGGCCAGTTCACAGAG CTGTGTGTAAAAGCACATGCATTGAAGGGTCAATCATGTGTCCACCACAGGCTAGTGGTT GGTGATGGCTTTGTGACTATGACAAAGGGTGAAAGTATTAGAAGTTTCTTTGAGCATGCT GAAGAGGCCGAGGAAGAGGATGAAGATGATGACATGGACAGGGATGGAAATGATTTTGAT GGTGATGGTGCCCATCCACAGAAGCATGCCAAGAGCCCTGAACTGGCAAGAGAATTTCTT TTGGATGCTGCTGCTGTGATATTCAAAGAACAGGTTGAGAAGGCCTTCAGGGAAGGTACG GCACAGCAAAATGCACATAGTATTTTTGTGTCCCTTGCTTTAAAACTTTTGGAACAGCGA GTTCATGTCGCATGCAAAGAAATTATTACGTTGGAAAAACAGAACAAACTTCTTGAGGAA GAGGAGAAAGAAAAGCGTGAAGAACAAGAGCGCAGGTTGAAGAGGAGAACAAGAGAGAGA GAAAAGAAGAACAGGAGAAAAGAAAGGCTGAAAGAAAAGGAAAATAATAAAGGGAAAAAA CTAGTTGAATCAAAGTCACGAAATGATATTCTATCTTCAGCTCCAAGCAACTCCACAACA TCTATCAATGATTATTCGACAAATACTCTGGACTCAAGAGATTCAGTTAAGGAAGATGAA GATAGTGCTGAAGTTGTGAATCTGTGCTCTCCTGACAGCTGTATGAATCAATCTTCATGT ACAAAAATTAATGGAGAAAACAGTGTCCACTTCAATGCAGTAACAGAATTTTCTCCAATG GACAGTAGTGACCTTTGTACATCAGATCAATCCAAGTCTTCGAGACGGGGTCCAAGGTCA AGGGAGGATTTTCCTCAAGATCAGTCCTGTTGGTATGATGACTGCGGAGATGAGTCTGGA AGAATTGGTGAATTACAATGGAAGTCAAGGGAAAGGACAAGAAGTATTAATAGAAGTCGC AACGCAGCATCCACCTCAAACAACAGGACAAGAGAGAGGCAATCATACAATTCTTGCAGC TGCGGCCATCTGGAAGACTATGGAGTCATGGACAGCTGTTTCTTGCCAACAGCTAGATCT GGCAAAGAGACGAAGATAGCAAGAAAATCAGGAGTTGAGAAACCTAGGGTGCAGTACCAC AGATGCTATACATTGGATAGCTTTATAGTGTCAAAAGGAAACCGTGCTGGTTCTACACAG AAAAATGCTATCCCAAAGCAAATATGGGAGCCTATGGATGCTCGAAGGAAGACTAAATTA CACAATACAGTTCATGATTCAGGTTCAGTTAACGATGTTGATTCACTGAAACATGTGGTT TTTGATAACAGTGGATCTCAAAATTTTGGAGTAGGATGTGAATCACAGCCTCAGGCTTCT GAAAGTTCCAGGGATGAATGTAATTCAGATCAACCATGTGCAAATGGTGGGAGAAATCAA ACTATTTCATGTGCTAGTAGTACTCTTATGGTGAACCAACAAAACTGTTGCGCAGGAAAT GATGAAGGCTCCAGGCATGATGAAGAGCTGATGATGAACTCTGCTGGCTCTGATAGCTCC TCGTCATGCATGAGCGAGGGAGATAGGGAAAGCAGCTCCAGCAGTACAACCTCTTCAAGC GCTCAAAATCCGGAATCATCTTCTGAGTCTGAGGAATCACCCGAGAGAATAAATAGCACA GTAGGTACACAATCATCAAGAGCTGCTGCTTCACGGTCTTTGCTTGAAGCATGTGCAGGT AATGGTTTCAGAGAATACCAACCCAAGGCAACCGGCCTAGCTCACAATGACATGTTTGGG TACAATGTATCCCCTGTCCAGGACCAGCTGCTGCATTACCAAAGCATGTATCCACCTCAA CATCGGCCAATAACAATGGGGTTTCATGACGGTTCTTGGGCTGCACCAACGAATGGAAAC TTTCAGTATGCTCGACCATCCCACTTATATTCTAGTCCACTCGTATTCGGAATACCTGGG AACCATTTTATTGATTATCCTTACATGGCTCCCGCCTTCAGCCATATACCTCCAGAGCCT ATTCACAAGGCCGCATCCAGCTTTAGAGCCATGCCTCTGTCACTGCCTTTTCAAAACGGA CATCGGCAGGCTGCTAGTCTTACTCAGAGAGACATGAATCTAGAAAGGCGCCCTGCAAAG TTGACTAAGCCGACAGGCAAGGATCCCCCAGAAAACAAGAACAAGTCGGGCCTAAAGGAT CTCCCAGAAGACAAGAGCAAATCATGGGATGCGGATGCATCCTTCTCGTTGTTCCAATTC AACTTGCCAATAGCTTCGCCTGTAACACCATCATCAAAAGATAAGAGCGGAGAGCTGGCC GCAAGGACGCCACTGGCTCAGGTGCAAGCTCAGCTTTGCTCGAGGGAACAAGCAGATGTC AAGGAGTATAGCCTGTTCTCCTCGAAAGATAATGGCATATTTTCGTTTATGTAG

Peptide Sequence

PEP ID	Zm00001d028339_P043
PEP Infomation	pep chromosome:B73_RefGen_v4:1:31208804:31218839:-1 gene:Zm00001d028339 transcript:Zm00001d028339_T043 gene_biotype:protein_coding transcript_biotype:protein_coding description:Whole genome shotgun sequence of line PN40024 scaffold_7.assembly12x (Fragment)
Sequence	MPGVASAAGSGIWSRRRDEITFDRLQKELLKLDKQTLIEQARKNFYCSKCNGLLLESFAK IVIYGKSLQQEASDICRLRTAIESRVTQGEQDGAQDPSIHPWGGLSTTKDGFLTLLDCFI KAESLCVLQNVFDNARAREREREMLYPDACGAGGRGWISQGMANYRGHGIREMCALHTAH LSCDTLVDFWSALGEETRSSLLRMKEEDFIEKLMYRFDSKRFCRECRRNVIREFKELKEL KRMRREPHCTSWFCVADTAFQCEVFEDAVIVDWRQCLSEPDESYDHFEWAIGTDEGESDI FGFENVGMNAQVHRNGIDLDQFEDYFITLRAWRLDGQFTELCVKAHALKGQSCVHHRLVV GDGFVTMTKGESIRSFFEHAEEAEEEDEDDDMDRDGNDFDGDGAHPQKHAKSPELAREFL LDAAAVIFKEQVEKAFREGTAQQNAHSIFVSLALKLLEQRVHVACKEIITLEKQNKLLEE EEKEKREEQERRLKRRTREREKKNRRKERLKEKENNKGKKLVESKSRNDILSSAPSNSTT SINDYSTNTLDSRDSVKEDEDSAEVVNLCSPDSCMNQSSCTKINGENSVHFNAVTEFSPM DSSDLCTSDQSKSSRRGPRSREDFPQDQSCWYDDCGDESGRIGELQWKSRERTRSINRSR NAASTSNNRTRERQSYNSCSCGHLEDYGVMDSCFLPTARSGKETKIARKSGVEKPRVQYH RCYTLDSFIVSKGNRAGSTQKNAIPKQIWEPMDARRKTKLHNTVHDSGSVNDVDSLKHVV FDNSGSQNFGVGCESQPQASESSRDECNSDQPCANGGRNQTISCASSTLMVNQQNCCAGN DEGSRHDEELMMNSAGSDSSSSCMSEGDRESSSSSTTSSSAQNPESSSESEESPERINST VGTQSSRAAASRSLLEACAGNGFREYQPKATGLAHNDMFGYNVSPVQDQLLHYQSMYPPQ HRPITMGFHDGSWAAPTNGNFQYARPSHLYSSPLVFGIPGNHFIDYPYMAPAFSHIPPEP IHKAASSFRAMPLSLPFQNGHRQAASLTQRDMNLERRPAKLTKPTGKDPPENKNKSGLKD LPEDKSKSWDADASFSLFQFNLPIASPVTPSSKDKSGELAARTPLAQVQAQLCSREQADV KEYSLFSSKDNGIFSFM

Transcript Sequence

Transcript ID	Zm00001d028339_T043
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:31208804:31218839:-1 gene:Zm00001d028339 gene_biotype:protein_coding transcript_biotype:protein_coding description:Whole genome shotgun sequence of line PN40024 scaffold_7.assembly12x (Fragment)
Sequence	CCCAGTCCCCCCATCTCTGTCCCTGTCCCCCCTCCTCCTCGCCTTTTACCCCGCATCGCC TCGCCGCCTCCTGCCCGTCTCGCTGAAACCCTCTTGGTCACCGCCGTGGTCGATCCGACC CGGCAGTAGCCGCAGCATCCTACGAGGGCCGTTGGCGGGGTCGTCGTCGTCGTCGTGTTC GGCGGCGGGAATTGGATGCGCCACGGAGCGGGCGAGGGGACCTAGTTGAGTTGAATACGG CAGCGACGGGAGGACGTGATGCCGGGGGTGGCGTCAGCAGCGGGATCGGGGATCTGGTCG CGCCGGCGGGACGAGATCACGTTCGATCGCCTTCAGAAGGAACTCCTCAAATTGGATAAG CAAACTCTCATTGAACAAGCACGCAAGAATTTCTACTGCTCAAAGTGCAATGGGTTGCTT CTGGAAAGTTTTGCAAAAATTGTTATATATGGGAAGTCATTGCAGCAAGAAGCTTCAGAT ATTTGTCGCCTGAGGACAGCTATTGAATCAAGAGTTACGCAAGGAGAGCAAGATGGGGCT CAGGACCCATCAATTCATCCCTGGGGAGGCCTTTCAACCACAAAAGATGGCTTCCTTACA CTTCTTGACTGCTTTATAAAAGCAGAATCATTATGTGTGCTTCAGAATGTATTTGACAAT GCACGGGCAAGAGAAAGGGAACGGGAAATGCTTTATCCTGATGCCTGTGGTGCAGGTGGC AGAGGATGGATCAGCCAAGGGATGGCTAACTATAGGGGTCATGGAATAAGAGAAATGTGT GCTCTACACACTGCCCACCTTTCATGTGATACACTCGTGGATTTCTGGTCAGCGCTTGGT GAAGAAACTAGGTCATCTCTTCTGCGGATGAAGGAGGAGGATTTCATTGAAAAACTTATG TACAGGTTTGATAGCAAGAGATTTTGCCGAGAGTGTCGAAGGAACGTTATCCGCGAATTC AAGGAGCTGAAGGAACTAAAGCGCATGCGAAGGGAACCTCACTGCACCAGTTGGTTTTGT GTTGCAGATACTGCGTTTCAGTGTGAGGTGTTTGAGGATGCTGTCATAGTTGATTGGCGC CAGTGTTTATCAGAGCCAGATGAATCTTATGACCACTTTGAATGGGCTATTGGAACAGAT GAAGGAGAATCCGATATTTTTGGCTTTGAAAATGTTGGAATGAATGCACAAGTCCACAGA AATGGAATCGATCTTGATCAGTTTGAGGACTACTTCATAACACTGCGAGCTTGGAGGCTT GATGGCCAGTTCACAGAGCTGTGTGTAAAAGCACATGCATTGAAGGGTCAATCATGTGTC CACCACAGGCTAGTGGTTGGTGATGGCTTTGTGACTATGACAAAGGGTGAAAGTATTAGA AGTTTCTTTGAGCATGCTGAAGAGGCCGAGGAAGAGGATGAAGATGATGACATGGACAGG GATGGAAATGATTTTGATGGTGATGGTGCCCATCCACAGAAGCATGCCAAGAGCCCTGAA CTGGCAAGAGAATTTCTTTTGGATGCTGCTGCTGTGATATTCAAAGAACAGGTTGAGAAG GCCTTCAGGGAAGGTACGGCACAGCAAAATGCACATAGTATTTTTGTGTCCCTTGCTTTA AAACTTTTGGAACAGCGAGTTCATGTCGCATGCAAAGAAATTATTACGTTGGAAAAACAG AACAAACTTCTTGAGGAAGAGGAGAAAGAAAAGCGTGAAGAACAAGAGCGCAGGTTGAAG AGGAGAACAAGAGAGAGAGAAAAGAAGAACAGGAGAAAAGAAAGGCTGAAAGAAAAGGAA AATAATAAAGGGAAAAAACTAGTTGAATCAAAGTCACGAAATGATATTCTATCTTCAGCT CCAAGCAACTCCACAACATCTATCAATGATTATTCGACAAATACTCTGGACTCAAGAGAT TCAGTTAAGGAAGATGAAGATAGTGCTGAAGTTGTGAATCTGTGCTCTCCTGACAGCTGT ATGAATCAATCTTCATGTACAAAAATTAATGGAGAAAACAGTGTCCACTTCAATGCAGTA ACAGAATTTTCTCCAATGGACAGTAGTGACCTTTGTACATCAGATCAATCCAAGTCTTCG AGACGGGGTCCAAGGTCAAGGGAGGATTTTCCTCAAGATCAGTCCTGTTGGTATGATGAC TGCGGAGATGAGTCTGGAAGAATTGGTGAATTACAATGGAAGTCAAGGGAAAGGACAAGA AGTATTAATAGAAGTCGCAACGCAGCATCCACCTCAAACAACAGGACAAGAGAGAGGCAA TCATACAATTCTTGCAGCTGCGGCCATCTGGAAGACTATGGAGTCATGGACAGCTGTTTC TTGCCAACAGCTAGATCTGGCAAAGAGACGAAGATAGCAAGAAAATCAGGAGTTGAGAAA CCTAGGGTGCAGTACCACAGATGCTATACATTGGATAGCTTTATAGTGTCAAAAGGAAAC CGTGCTGGTTCTACACAGAAAAATGCTATCCCAAAGCAAATATGGGAGCCTATGGATGCT CGAAGGAAGACTAAATTACACAATACAGTTCATGATTCAGGTTCAGTTAACGATGTTGAT TCACTGAAACATGTGGTTTTTGATAACAGTGGATCTCAAAATTTTGGAGTAGGATGTGAA TCACAGCCTCAGGCTTCTGAAAGTTCCAGGGATGAATGTAATTCAGATCAACCATGTGCA AATGGTGGGAGAAATCAAACTATTTCATGTGCTAGTAGTACTCTTATGGTGAACCAACAA AACTGTTGCGCAGGAAATGATGAAGGCTCCAGGCATGATGAAGAGCTGATGATGAACTCT GCTGGCTCTGATAGCTCCTCGTCATGCATGAGCGAGGGAGATAGGGAAAGCAGCTCCAGC AGTACAACCTCTTCAAGCGCTCAAAATCCGGAATCATCTTCTGAGTCTGAGGAATCACCC GAGAGAATAAATAGCACAGTAGGTACACAATCATCAAGAGCTGCTGCTTCACGGTCTTTG CTTGAAGCATGTGCAGGTAATGGTTTCAGAGAATACCAACCCAAGGCAACCGGCCTAGCT CACAATGACATGTTTGGGTACAATGTATCCCCTGTCCAGGACCAGCTGCTGCATTACCAA AGCATGTATCCACCTCAACATCGGCCAATAACAATGGGGTTTCATGACGGTTCTTGGGCT GCACCAACGAATGGAAACTTTCAGTATGCTCGACCATCCCACTTATATTCTAGTCCACTC GTATTCGGAATACCTGGGAACCATTTTATTGATTATCCTTACATGGCTCCCGCCTTCAGC CATATACCTCCAGAGCCTATTCACAAGGCCGCATCCAGCTTTAGAGCCATGCCTCTGTCA CTGCCTTTTCAAAACGGACATCGGCAGGCTGCTAGTCTTACTCAGAGAGACATGAATCTA GAAAGGCGCCCTGCAAAGTTGACTAAGCCGACAGGCAAGGATCCCCCAGAAAACAAGAAC AAGTCGGGCCTAAAGGATCTCCCAGAAGACAAGAGCAAATCATGGGATGCGGATGCATCC TTCTCGTTGTTCCAATTCAACTTGCCAATAGCTTCGCCTGTAACACCATCATCAAAAGAT AAGAGCGGAGAGCTGGCCGCAAGGACGCCACTGGCTCAGGTGCAAGCTCAGCTTTGCTCG AGGGAACAAGCAGATGTCAAGGAGTATAGCCTGTTCTCCTCGAAAGATAATGGCATATTT TCGTTTATGTAGATAAAAGAAAAACTGTGACAAACCTGCTACCCTTCGTTTCTGGTGTCT CTTGCTGCACTTCGTGAATGCTTTGTGTTCTCC