Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028332_T034
CDS Infomation

cds chromosome:B73_RefGen_v4:1:31053356:31060581:-1 gene:Zm00001d028332 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit gamma
Sequence

ATGTGTGAGTCAAGCATGAACACTCAAAATGGTGACCGTCCATTTTTTGATTTTCTGGAA
TCATCCCTCAGACATAAAGCAGAAATGGTGGCTTTGGAAGCTGCACGGAAGATAACAGAG
ATGGATGTTACAAGCCGTGAATTGGCACCAGCAATTACTTTGTTACAGTTATACTTGAGT
TCATCCAAGCCTGTGCTTCGATTTGCTGCTGTCCGGACTCTCAATAAGGTTGCTAGGACA
CGACCTCTGGCGGTGACAAACTGCAATGTGGACTTGGAGAGTTTGTTGTCAGACCAGAAC
AGGAGTATAGCGACCCTGGCAATTACTACTCTTCTTAAAACTGGCAATGAATCAAGTGTG
GATCGTCTCATTAAACAAATTACCCTTTTCATGTCTGACATAGCAGATGAATTCAAGATA
GTTGTTGTTGAAGCTATACGGTCTTTGTGCCTGAAGTTCCCACTAAAATATCGCTCAATG
TTGAATTTTTTGAGCAACAGCTTGAGGGAAGAAGGGGGCTTTGAGTATAAAAAAGCCATA
GTGGATTCCATAGTTACTTTGGTCAGTGAAATACCAGATGCCAAAGAAATTGGCCTGCTT
CATCTTTGTGAATTCATCGAAGACTGTGAATTCACATATCTTTCTAGTCAGATTTTGCAC
TTTTTGGGAAATGAAGGACCAAGGACATCAGATCCAAGCAGGTACATTCGCTACATATAC
AACCGTGTGATATTGGAAAATGCCACTGTTCGTGCTAGTGCTGTCAGCACGCTGGCAAAG
TTTGGTGCCCTGGTTGATACGCTCAAGCCTCAGATCTTTGTTCTCTTGCAACGATGCCTG
TTTGATACTGAAGATGAGGTTCGTGATCGTGCTACACTCTATCTCCAAACCCTTAGCGGT
GAAGTTGCCATTGGTAATGATGAGAAGGATGTGAAAGACTTCCTATTTGGATCTTTTGAT
GTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTATGAACCTTCAGAGGAGCCATTT
GACATATCTTTGGTGTCAAGAGAAGTCAGGTCGCTACCACCTAAAGAGAAGGCAGCCCCT
GGCAAGAGGCCACCTGCTGGTGCTGCCGCCGCCGCCGCCCCTGTTTCAACTGTTGATGCT
TATCAGAAAATGCTTTCGTTCATTCCCGAGTTCTCTGGGTTTGGAAGGCTCTTCAAGTCC
TCTGAACCCATGGAGCTGACAGAGGCAGAAACTGAATATGCTGTTAGTGTGGTTAAACAC
ATTTATGACGGCTACATTGTATTGCAGTACAATTGTGCAAACACTATAGAAGAACAACTG
CTAGAAGATGTCACTGTTTGCGTTGATGCCTCAGATGCTGAGGAGTTTTCAGAGATTTGT
TCAAAGCCTCTTGCAAGCTTGCCGTATAATTCACCTGGGCAAGTTTTTGTTGCTTTTGAA
AAGCCAGAGCGTGTACCTGTTGTTGGGAAGTTTTTAAATTTG

Peptide Sequence

PEP ID

Zm00001d028332_P034
PEP Infomation

pep chromosome:B73_RefGen_v4:1:31053356:31060581:-1 gene:Zm00001d028332 transcript:Zm00001d028332_T034 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit gamma
Sequence

MCESSMNTQNGDRPFFDFLESSLRHKAEMVALEAARKITEMDVTSRELAPAITLLQLYLS
SSKPVLRFAAVRTLNKVARTRPLAVTNCNVDLESLLSDQNRSIATLAITTLLKTGNESSV
DRLIKQITLFMSDIADEFKIVVVEAIRSLCLKFPLKYRSMLNFLSNSLREEGGFEYKKAI
VDSIVTLVSEIPDAKEIGLLHLCEFIEDCEFTYLSSQILHFLGNEGPRTSDPSRYIRYIY
NRVILENATVRASAVSTLAKFGALVDTLKPQIFVLLQRCLFDTEDEVRDRATLYLQTLSG
EVAIGNDEKDVKDFLFGSFDVPLANLEASLRTYEPSEEPFDISLVSREVRSLPPKEKAAP
GKRPPAGAAAAAAPVSTVDAYQKMLSFIPEFSGFGRLFKSSEPMELTEAETEYAVSVVKH
IYDGYIVLQYNCANTIEEQLLEDVTVCVDASDAEEFSEICSKPLASLPYNSPGQVFVAFE
KPERVPVVGKFLNL

Transcript Sequence

Transcript ID

Zm00001d028332_T034
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:31053356:31060581:-1 gene:Zm00001d028332 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit gamma
Sequence

TGTCGCATGCCTCGCTCACTCGTCGTCGGCGACCTCGCCGTACCGGAGATGGCGCATCCG
TACATGAAGAAGGACGACGACGACGAAGATGTCGAGTATTCACCATTCTTTGGGATCGAG
AAGGGGTCTGTTCTGCAGGAGGCACGAGCTTTCCATGATCCACAGCTTGATGTGAGACGA
TGTTCGCAAGTCATCATCAAGCTATTATATTTACTTAATCAAGGAGAGACATTCACCAAG
GTTGAGGCCACGGAAGTCTTCTTTGCAGTAACAAAGTTATTCCAGTCTAGTGATGCTGGT
CTTAGGAGGCTAGTGTACTTAATGATCAAAGAACTTTCTCCATCGTCAGATGAGGTCATC
ATAGTCACAAGCTCATTGATGAAGGACATGAATAGCAAGACAGATATGTACCGTGCCAAT
GCTATTAGAGTTCTTTGTAGAATAATTGATGGTACCCTACTAACTCAAATTGAGAGATAT
TTGAAGCAAGCTATTGTTGACAAGAACCCAGTGGTTGCTAGTGCTTCTCTTGTTAGTGGC
ATCCACCTGGCCCAGGCAAACCCAGAAATTGTGAAAAGATGGAGCAACGAAGTTCAGGAA
GCTGTGCAATCAAGAGCTCCACTTGTCCAGTTTCATGGCCTTGCTCTTCTTCACCAGGTA
TACTTGTTCCATTGAGCCAGCCATTGGTTTCCTAGATGCTAAACCCACCAGACGGTCAGT
CACCCTTTGATTAGCGTTTAGTTGGTGTGGACAATAAATTATATGGTTTAAACAGTTTGC
ACTGTAGCAGTAAATATGCATACAAACACTATAGTTACATACTAAATTTTTGAATGTTAC
TCGAGACATGCACACAGTTGCACAATATATCATAGACAATTAGACAGACATAATGACATA
GATAGTAGACTTGCAGTTCTTGGTTCTCGCATAGTTAAATGATAAGCTGTTATTACGTAA
TAACATTACATTTGTGTCGGGGATCAGATACCCGGGCCCCAGGGGGCCACAAGTCAGAAG
AGGAGTAGGGAGGGACCTGCCTGGGCGGGACCGCCTTCGGAAGACCCCCGCGCCCTGAGC
CCAGGGGTCGGGCGAGGTGAAGCACGGTCGGAGGGCCAGAACGAATCGACAGGGAACCAC
TCAAGTGGATTCCGCGTCCGGTCATAAGACTGCTCTCGCCATCAATGCTCCGCACACCAC
ATTAATTGTGCCTGGCACTGAGCCGCGGCGTTGAGCCGATCCGCCTACCACTCATGACCT
ACGAGTCCGAGGCCTGAGCCCCACTCATAACCTATGGGCCCTAGGCCTGAGCCCCCGACT
CCCTACGGAGCACACAAGACGATGGAAGAAAGCTAGAAGGACAGACTAAAGGTTCGGCGC
GAGAAGAGGCGAACAGGAGGAGTAATGATGGCGTTCAGACTCCCGTCGCAAGCACGCTTC
CCCAACATATTTAAGATGAGCACGAGTCATATGAGGACAAATATCAACGAGGATTTTACC
AAGAGAAAACCATTCCATTTTACCAGCGTAGCAGTTCCTTCCGATTGAAGATATCTGTAA
CCGCCCCTGCGGCCCCCTTCTTGATCTATAAAAGGAAGGTCGGCCCGACGAAGAAGAGAG
ACCGAATCCGAGAAGCACACTTGAGACATAGACCCTTCAGCACACACACATAGAGACTTG
GCACCCCTTCCTCTCTAGCCCACTTGTAACCCCTACTGTGAGCAACAAGGTGTCGGTAGC
GCGAGCCATCGAAGACGGGAAGTAGGGTCGTTTTGTTCAAACCAGTATAAATCTTGCGTC
CATTGAGCACATCATCCGGAGCCAAAACGTGCATACACAAATTTACTCGTTGGTGCTGGT
TCGGAACACTGACAATCATTGTTATTAAAACGTCGCTTAAACGTCGTTTAAACGACAAAA
TGTGATTAAGAGTTGAAACATCCGAACGTTTTACCAAAATGGAGTAGAACGTCTGTTTCA
CGCATTTAAACGTTGGTTAAATGTCCTCTGAGCGTTTTAAGGCGTTTTACTTGCGTTTAG
GACGTTCTACTCGTCGTGGGCTTTTCCTTTCCTGGGCCAAAAGATGGAAAAACCCTAAGT
TCCTTTGGTTCCATTCTACTGTATATGTAAAATTATATGATAGTTTCAGTAAACGGTCAG
GTTTTATAGTGTGCATTTGGATAATGTGTACTATGCTCTAGTTTCTCTTCGCTTTTTATA
CTTAATCTTCATTTGATTTCTCCCCAACTTGCAGATTAGACAGAATGATCGTTTAGCTGT
AAGCAAACTAGTTTCAAGTTTGACAAGGGGATCTGTCCGTTCTCCTCTTGCACAATGTCT
TCTGATTCGTTACACAAGCCAGGTTATGTGTGAGTCAAGCATGAACACTCAAAATGGTGA
CCGTCCATTTTTTGATTTTCTGGAATCATCCCTCAGACATAAAGCAGAAATGGTGGCTTT
GGAAGCTGCACGGAAGATAACAGAGATGGATGTTACAAGCCGTGAATTGGCACCAGCAAT
TACTTTGTTACAGTTATACTTGAGTTCATCCAAGCCTGTGCTTCGATTTGCTGCTGTCCG
GACTCTCAATAAGGTTGCTAGGACACGACCTCTGGCGGTGACAAACTGCAATGTGGACTT
GGAGAGTTTGTTGTCAGACCAGAACAGGAGTATAGCGACCCTGGCAATTACTACTCTTCT
TAAAACTGGCAATGAATCAAGTGTGGATCGTCTCATTAAACAAATTACCCTTTTCATGTC
TGACATAGCAGATGAATTCAAGATAGTTGTTGTTGAAGCTATACGGTCTTTGTGCCTGAA
GTTCCCACTAAAATATCGCTCAATGTTGAATTTTTTGAGCAACAGCTTGAGGGAAGAAGG
GGGCTTTGAGTATAAAAAAGCCATAGTGGATTCCATAGTTACTTTGGTCAGTGAAATACC
AGATGCCAAAGAAATTGGCCTGCTTCATCTTTGTGAATTCATCGAAGACTGTGAATTCAC
ATATCTTTCTAGTCAGATTTTGCACTTTTTGGGAAATGAAGGACCAAGGACATCAGATCC
AAGCAGGTACATTCGCTACATATACAACCGTGTGATATTGGAAAATGCCACTGTTCGTGC
TAGTGCTGTCAGCACGCTGGCAAAGTTTGGTGCCCTGGTTGATACGCTCAAGCCTCAGAT
CTTTGTTCTCTTGCAACGATGCCTGTTTGATACTGAAGATGAGGTTCGTGATCGTGCTAC
ACTCTATCTCCAAACCCTTAGCGGTGAAGTTGCCATTGGTAATGATGAGAAGGATGTGAA
AGACTTCCTATTTGGATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAAC
TTATGAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGGTCGCT
ACCACCTAAAGAGAAGGCAGCCCCTGGCAAGAGGCCACCTGCTGGTGCTGCCGCCGCCGC
CGCCCCTGTTTCAACTGTTGATGCTTATCAGAAAATGCTTTCGTTCATTCCCGAGTTCTC
TGGGTTTGGAAGGCTCTTCAAGTCCTCTGAACCCATGGAGCTGACAGAGGCAGAAACTGA
ATATGCTGTTAGTGTGGTTAAACACATTTATGACGGCTACATTGTATTGCAGTACAATTG
TGCAAACACTATAGAAGAACAACTGCTAGAAGATGTCACTGTTTGCGTTGATGCCTCAGA
TGCTGAGGAGTTTTCAGAGATTTGTTCAAAGCCTCTTGCAAGCTTGCCGTATAATTCACC
TGGGCAAGTTTTTGTTGCTTTTGAAAAGCCAGAGCGTGTACCTGTTGTTGGGAAGTTTTT
AAATTTGTT