Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028284_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:1:29163634:29166875:-1 gene:Zm00001d028284 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ternary complex factor MIP1

Sequence

ATGCCGTCCGGTGCTACTGAGCTTCCATGCTCCTTGAAGCGTGAGGTCCAAGTTCTTGAA
AAGCGATTGAATGATCAATTCGTCATGCGCCGTGCTCTTGAGAAAGCTCTAGGTTACAAG
CCTTGTGCTATCCATGCATCAAGTGAGAACTGCATTCCAAAGCCGACTGAGGAGCTAATA
AAGGAGATTGCAGTTCTCGAGCTAGAGGTCATATGCTTGGAGCAACATCTCCTAACACTA
TACAGAAAGGCATTTGAGCAACAATTTTCCCCTGCAAGTTCTGCTTGTGACATGGAGAGC
AACAAGCAGCCAGCAAGGTCCTTTTCAGGCATACTCTCTGAAGCTCCAGAGCTGAGCTTC
TCGACCCCAAGGAAGCATCATCAGCTAAACCAGTCCAGTCGAATGGTCCTGGCACGCAAG
TCCACGCCTACAGCTTCTACAAGCGAGACTAGCAATGAGAAGATCAATATCGGACGCAGC
CATTCCTCGCTCCTGCACCGCTCCGTTAGGGTATCTCCGTCGGCAAACAATCTCGCTAGA
GCTCTGAAACCATGCCATACTTCGCCTCTATCTTTTGTTGAGGAAGGGAAATGCATGGAT
CCTGGCGTGGTGAGTTTGGCAGACATCTTGGGGACCAGGGTCGCGGACCATGTTCCCCAA
ACGCCGAACAAGATATCCGAGGACATGATCAAATGCATTACGGCCGTATACATGAGGCTG
AGAGACGTCCCCGCCGTGCAGCACGCCTTCTTCCCCTCACCGTGCTCATCCTTTTCTTCG
GCGAGCGGGCTGTCTTCCAAATACACCGCGGACATATGGAGCCCCAGGTGCAGGAAAGAG
AGCTTCGTTGAGGAGTGGCAGGACAACGGGTTAGGCAACGGTGAATCTAGGGAGCTGGCC
CTGCCATATGATTCTGTGGTAGAGGTGTCTGCTCTTTGCAAAGGTGATCAGAGGTCCGCT
GACGTGAAGGATATGCTGCGCAAATACATGTCACTTGTGCAGCTTCTCGAAAGCGTTGAT
CTCAGCGGGATGAAACATGAAGAGAAGCTCGCTTTCTGGATCAACGTGCATAATGCGATG
ATGATGCATGCCCATATAGAGTACGGGATCCCACAGAGTAACAGCAAAAGGATACTGCTT
ACCAAGGTGTCGTACATCATTAGTGGCCAAAGAGTGAACGCGGAGCTGATAGAGTACCAG
ATCCTGTGCTGCCGAGCGCACTCTTCTGGACAGTGGCTTCGGCTGCTGCTATACCCGAAA
TGGAAGTCCAGGGACAAGGACGAGCTGCAAGGCTTCGCCGTGGACCGCCCCGAGCCGCTG
GTGCACTTCGCACTGTCCTCCGGTAGCTACTCGGATCCAGTGGTGCGGCTGTACAGCCCC
AAGAGCGTGTTCCAGCAGCTGGAGGCGGCGAAGGAGGAGTACGTCCGCGCCAACGTGGGC
GTCCGCGGGCGGGGGCAGCACAAGATCATCCTCCCCAAGGCCCTGGAGCTGTACGCGAGG
GACGCCGGGCTGGGCGCGCAGGAGGTGGTGGCCGCGGTCGAGTGCCACCTGCCCGAGGGC
CTCCGGGACGCCGTGCGCCGGAGCCAGCAGCAGGCCGGCCGGGCGCGCGCCGTGGAGTGG
AAGCCCCACAACCTGGCGTTCCGGTACCTGCTGGCCAAGGAGCTGGTCGGCGGGTCCCCC
GCGTGCAGCCGGCCGCTGGAGCCGGTCAGTGCGCCGCTGCGGGCTGGTCCGTGA

Peptide Sequence

PEP ID

Zm00001d028284_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:1:29163634:29166875:-1 gene:Zm00001d028284 transcript:Zm00001d028284_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ternary complex factor MIP1

Sequence

MPSGATELPCSLKREVQVLEKRLNDQFVMRRALEKALGYKPCAIHASSENCIPKPTEELI
KEIAVLELEVICLEQHLLTLYRKAFEQQFSPASSACDMESNKQPARSFSGILSEAPELSF
STPRKHHQLNQSSRMVLARKSTPTASTSETSNEKINIGRSHSSLLHRSVRVSPSANNLAR
ALKPCHTSPLSFVEEGKCMDPGVVSLADILGTRVADHVPQTPNKISEDMIKCITAVYMRL
RDVPAVQHAFFPSPCSSFSSASGLSSKYTADIWSPRCRKESFVEEWQDNGLGNGESRELA
LPYDSVVEVSALCKGDQRSADVKDMLRKYMSLVQLLESVDLSGMKHEEKLAFWINVHNAM
MMHAHIEYGIPQSNSKRILLTKVSYIISGQRVNAELIEYQILCCRAHSSGQWLRLLLYPK
WKSRDKDELQGFAVDRPEPLVHFALSSGSYSDPVVRLYSPKSVFQQLEAAKEEYVRANVG
VRGRGQHKIILPKALELYARDAGLGAQEVVAAVECHLPEGLRDAVRRSQQQAGRARAVEW
KPHNLAFRYLLAKELVGGSPACSRPLEPVSAPLRAGP

Transcript Sequence

Transcript ID

Zm00001d028284_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:29163634:29166875:-1 gene:Zm00001d028284 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ternary complex factor MIP1

Sequence

GCGATTCTATCAGAGTGCTCGGGATGGATAGCGCGGATTCCTCTTCGCCGAGGTGCCACG
CTCAGTAGAAGGATGCCGGAGAACTCAAGGACCAGAATAGCACCAGCAAGATGCCGTCCG
GTGCTACTGAGCTTCCATGCTCCTTGAAGCGTGAGGTCCAAGTTCTTGAAAAGCGATTGA
ATGATCAATTCGTCATGCGCCGTGCTCTTGAGAAAGCTCTAGGTTACAAGCCTTGTGCTA
TCCATGCATCAAGTGAGAACTGCATTCCAAAGCCGACTGAGGAGCTAATAAAGGAGATTG
CAGTTCTCGAGCTAGAGGTCATATGCTTGGAGCAACATCTCCTAACACTATACAGAAAGG
CATTTGAGCAACAATTTTCCCCTGCAAGTTCTGCTTGTGACATGGAGAGCAACAAGCAGC
CAGCAAGGTCCTTTTCAGGCATACTCTCTGAAGCTCCAGAGCTGAGCTTCTCGACCCCAA
GGAAGCATCATCAGCTAAACCAGTCCAGTCGAATGGTCCTGGCACGCAAGTCCACGCCTA
CAGCTTCTACAAGCGAGACTAGCAATGAGAAGATCAATATCGGACGCAGCCATTCCTCGC
TCCTGCACCGCTCCGTTAGGGTATCTCCGTCGGCAAACAATCTCGCTAGAGCTCTGAAAC
CATGCCATACTTCGCCTCTATCTTTTGTTGAGGAAGGGAAATGCATGGATCCTGGCGTGG
TGAGTTTGGCAGACATCTTGGGGACCAGGGTCGCGGACCATGTTCCCCAAACGCCGAACA
AGATATCCGAGGACATGATCAAATGCATTACGGCCGTATACATGAGGCTGAGAGACGTCC
CCGCCGTGCAGCACGCCTTCTTCCCCTCACCGTGCTCATCCTTTTCTTCGGCGAGCGGGC
TGTCTTCCAAATACACCGCGGACATATGGAGCCCCAGGTGCAGGAAAGAGAGCTTCGTTG
AGGAGTGGCAGGACAACGGGTTAGGCAACGGTGAATCTAGGGAGCTGGCCCTGCCATATG
ATTCTGTGGTAGAGGTGTCTGCTCTTTGCAAAGGTGATCAGAGGTCCGCTGACGTGAAGG
ATATGCTGCGCAAATACATGTCACTTGTGCAGCTTCTCGAAAGCGTTGATCTCAGCGGGA
TGAAACATGAAGAGAAGCTCGCTTTCTGGATCAACGTGCATAATGCGATGATGATGCATG
CCCATATAGAGTACGGGATCCCACAGAGTAACAGCAAAAGGATACTGCTTACCAAGGTGT
CGTACATCATTAGTGGCCAAAGAGTGAACGCGGAGCTGATAGAGTACCAGATCCTGTGCT
GCCGAGCGCACTCTTCTGGACAGTGGCTTCGGCTGCTGCTATACCCGAAATGGAAGTCCA
GGGACAAGGACGAGCTGCAAGGCTTCGCCGTGGACCGCCCCGAGCCGCTGGTGCACTTCG
CACTGTCCTCCGGTAGCTACTCGGATCCAGTGGTGCGGCTGTACAGCCCCAAGAGCGTGT
TCCAGCAGCTGGAGGCGGCGAAGGAGGAGTACGTCCGCGCCAACGTGGGCGTCCGCGGGC
GGGGGCAGCACAAGATCATCCTCCCCAAGGCCCTGGAGCTGTACGCGAGGGACGCCGGGC
TGGGCGCGCAGGAGGTGGTGGCCGCGGTCGAGTGCCACCTGCCCGAGGGCCTCCGGGACG
CCGTGCGCCGGAGCCAGCAGCAGGCCGGCCGGGCGCGCGCCGTGGAGTGGAAGCCCCACA
ACCTGGCGTTCCGGTACCTGCTGGCCAAGGAGCTGGTCGGCGGGTCCCCCGCGTGCAGCC
GGCCGCTGGAGCCGGTCAGTGCGCCGCTGCGGGCTGGTCCGTGATCCGTCATCAGATCGC
CGTGGGCCCGTGGCCGTGCCGAGCCGAGCACGAGTTGAGATGTGCGGCGG