Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d028267_T010
CDS Infomation	cds chromosome:B73_RefGen_v4:1:28638711:28642886:-1 gene:Zm00001d028267 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trehalose-6-phosphate synthase2 description: trehalose-6-phosphate synthase2
Sequence	ATGGCGTCCCGCTCCTACTCCAACCTCCTCGACCTGGCAACCGGAGCAGCGGACCAGGCG CCGGCGGTCGCGGCGCTTGGCGCGCTCCGGCGGCGGCTGCCGCGCGTGGTCACCACCCCC GGGCTCATCGACGACTCGCCGGCGTCGCCGTCCACGCCGCCGCGGCCGCGCACCATCATC GTGGCCAACCAGCTCCCGATCCGGTCCCACCGCCCGGAGTCGCCGGAGGAGCCCTGGACC TTCGAGTGGGACGAGGACTCCCTCCTCCGCCACCTCCACCACTCGTCGTCCCCCCTGATG GAGTTCATCTACATCGGCTGCCTGCGCGACGACATCCCGCAGGCCGAGCAGGACGCCGTC GCGCAGGCGCTCCTCGAGACCCACAACTGCGTGCCGGCCTTCCTGCCCACGGACATCGCC GAGCGCTACTACCACGGCTTCTGCAAGCAGCACCTGTGGCCCCTCTTCCACTACATGCTG CCGCTGTCCCCCGACCTCGGCGGCCGCTTCGACCGCGCGCTGTGGCAGGCCTACGTCTCG GCCAACAAGATCTTCGCGGACAAGGTGCTGGAGGTGATCAACCCGGACGACGACTTCGTG TGGGTGCACGACTACCACCTCATGGTGCTCCCAACCTTCCTGCGCAAGCGCTTCAACCGC ATCAAGCTCGGCTTCTTCCTGCACTCGCCGTTCCCCTCGTCCGAGATCTACAAGACGCTC CCCGTGCGCGAGGAGCTTCTGCGCGCCCTGCTCAACTCCGACCTCATCGGCTTCCACACC TTCGACTACGCGCGCCACTTCCTCTCCTGCTGCGGCCGGATGCTCGGGCTCTCGTACGAG TCCAAGCGGGGGCACATTTGCCTCGAGTACTACGGCCGTACGGTGAGCATCAAGATCCTG CCTGTGGGGGTGCACATGGAGCAGCTCAAGACGGTGCTCGGGTTGCCGGAGACCGAGGCC AAGGTGTCCGAGCTGATGGAGATGTACTCTGGAAAGGGGAGAGTGGTCATGCTAGGCGTC GACGACATGGACATCTTCAAGGGGATCAGCCTCAAGCTCCTTGCCATGGAGGAGCTTCTG CGGCAGCACCCCGAGTGGCGGGGGAAGCTGGTGCTGGTGCAGGTGGCCAACCCGGCGCGA GGGAGGGGGAAGGACGTCGCCGAGGTGCAGACCGAGACGTACGCCATGGTGCGGCGCATC AACGAGGTGTACGGTGAGCCGGGGTACGAGCCGGTGGTCCTGATCGATGAGCCTCTGCAG TTCTACGAGCGCGTGGCCTACTACGTCATAGCCGAGGTGTGCCTGGTGACCGCGGTCAGG GACGGCATGAACCTGATTCCCTATGAGTACATCGTCTCCCGGCAGGGGAACGAGAAGCTG GACAGGATGCTGCGGCAGGGGAAGCCAGAGGAGAAGAAGAGCATGCTGGTGGTGTCCGAG TTCATCGGGTGCTCGCCGTCTCTGAGCGGCGCCATCAGGGTGAACCCGTGGAACATCGAG GCCGTGGCTGACGCCATGGAGACCGCCCTTGTGCTGCCTGAGAACGAGAAGAGGCTGCGC CACGATAAGCACTTCCGCTACGTGAGCACCCACGACGTCGGGTACTGGGCTAACAGCTTC CTCCTGGACCTTGAGAGGACCTGCAAGTATCATTCTCAGAAGAGGTGCTGGGGCATTGGC TTCGGCCTGCGGTTCAGAGTGGTCTCGCTCGACCTGACCTTCAGGAAGCTTTCCTTGGAG AACATCCTTATGGCATACCGGAGAGCCAAGACACGGGCAATTCTGCTGGACTACGATGGC ACGCTGATGCCACAGGCGATTAACAAGAGCCCGTCAACTGAATCTGTGCGGATCCTCAAC AGCCTGTGCCGAGACAAGGACAATGTGGTGTACCTATGCAGCGGGTATGACCGGCGCACC CTTCATGAGTGGTTCCCTTGTGAGAACCTTGGCATAGCCGCGGAGCATGGCTACTTCCTG AGGTGTAAGAGGGACGCGGAATGGAAGACCTGTGTCGCTGCCACAGACTGCAGCTGGAAG CAGATCGCGGAGCCGGTGATGTGCCTGTACAGGGAGACGACGGACGGCTCAACCATCGAG GACAGGGAGACGGTGCTCGTGTGGAACTACGAGGACGCGGACCCCGACTTCGGGTCGTGC CAGGCCAAGGAGCTCGTCGACCACCTTGAGAGCGTGCTCGCGAACGAGCCTGTGTCGGTG AAGACCACGCCTCACTCAGTTGAAGTGAAACCGCAGGGCGTGAGCAAGGGCTTGGTGGCC CGGCGCATGCTTGTGTCGATGAAGGAGCGGGGCCAGTGCCCGGACTTCGTCCTGTGCATC GGCGACGACAAGTCCGACGAGGACATGTTCCAGCTGATCGCCACCGCTGCCTGCGGGGAC TCGCTGGCGTCCAAGGCGGAGGTGTTCGCGTGCACCGTCGGCCGCAAGCCCAGCAAGGCC AAGTACTACCTCGACGACGCGGCGGAGGTGGTGAGGCTGATGCAGGGGCTCTCCTACGTC TCCGAGGAGCTGGCGCTGGCGAACCAGCGGGATGAAGACGAGGACTCCTCTCTGGACGAC GTGTGGGAGTAG

Peptide Sequence

PEP ID	Zm00001d028267_P010
PEP Infomation	pep chromosome:B73_RefGen_v4:1:28638711:28642886:-1 gene:Zm00001d028267 transcript:Zm00001d028267_T010 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trehalose-6-phosphate synthase2 description: trehalose-6-phosphate synthase2
Sequence	MASRSYSNLLDLATGAADQAPAVAALGALRRRLPRVVTTPGLIDDSPASPSTPPRPRTII VANQLPIRSHRPESPEEPWTFEWDEDSLLRHLHHSSSPLMEFIYIGCLRDDIPQAEQDAV AQALLETHNCVPAFLPTDIAERYYHGFCKQHLWPLFHYMLPLSPDLGGRFDRALWQAYVS ANKIFADKVLEVINPDDDFVWVHDYHLMVLPTFLRKRFNRIKLGFFLHSPFPSSEIYKTL PVREELLRALLNSDLIGFHTFDYARHFLSCCGRMLGLSYESKRGHICLEYYGRTVSIKIL PVGVHMEQLKTVLGLPETEAKVSELMEMYSGKGRVVMLGVDDMDIFKGISLKLLAMEELL RQHPEWRGKLVLVQVANPARGRGKDVAEVQTETYAMVRRINEVYGEPGYEPVVLIDEPLQ FYERVAYYVIAEVCLVTAVRDGMNLIPYEYIVSRQGNEKLDRMLRQGKPEEKKSMLVVSE FIGCSPSLSGAIRVNPWNIEAVADAMETALVLPENEKRLRHDKHFRYVSTHDVGYWANSF LLDLERTCKYHSQKRCWGIGFGLRFRVVSLDLTFRKLSLENILMAYRRAKTRAILLDYDG TLMPQAINKSPSTESVRILNSLCRDKDNVVYLCSGYDRRTLHEWFPCENLGIAAEHGYFL RCKRDAEWKTCVAATDCSWKQIAEPVMCLYRETTDGSTIEDRETVLVWNYEDADPDFGSC QAKELVDHLESVLANEPVSVKTTPHSVEVKPQGVSKGLVARRMLVSMKERGQCPDFVLCI GDDKSDEDMFQLIATAACGDSLASKAEVFACTVGRKPSKAKYYLDDAAEVVRLMQGLSYV SEELALANQRDEDEDSSLDDVWE

Transcript Sequence

Transcript ID	Zm00001d028267_T010
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:28638711:28642886:-1 gene:Zm00001d028267 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trehalose-6-phosphate synthase2 description: trehalose-6-phosphate synthase2
Sequence	ACCGAACTCCGTCCGTCCGACGCACACACGCCGGTAAATTTCCTCCCCAGTTGATTCCAG CGGCACTGCACTTGTGCTGCCTGCGTTCTTCTCCCCTGAGAGCTGCGGAAAGATCCAAGC GCAAGGCCACCTAACCAGAACCAAACAAGGCCGCCTCCGGATCGCCGAGCAAATTCCATA TTATTTTCCTCCCGTTTCTTGTTTTTCTCCTCTCGCTTATCCGTCTCCCAGAAGGAGAGG GAGAGGGAGAGCCGAACCGGGGTGATCGTTGCCGTCCCTGTCACCCCCACACCCCGCTGT CGTGGTGTCCTATGCGACTCGTTTGTTGCCGTCGGTCGCCTGGTTGATTAATCCAAGGCC AAGGATCTCCCCTCCACGAGGACCTCCGGAGAGGCCAGGGTGAGCTGCTATAAAGCTATT TCTCCTGTCCACCCCCACTTCTTCCTCATGCTGTCATGCAACATGAGCAGCTCTTAAGAG CATAGGAGGAGGGGTTGATTGCGGCTCGGAGATTCTTCTCGCGTTTCTCCTGCACTTTCC GTCTGATATTTATCAGCTTCTTACTTCAGTCCAGCAGAGTTCCTTTGCTTCATTGCTCGC TTTGAAGGGGATTTTTACTGCTAGTCTCTGAGCCGTCAAATTTTTCACCACTCAGCTGTA CTCCCCCACGTCCACCAGGCAAGAACAGCAACGTCAGTTTGCAGCAGAAGAAAAGGCTCT CCCTCCCTTTGTATTGAAAGCACAAAAAATCCTCTTTATCTCTCTGACTCCTTCCCCTCA CTCACAGGTGGCTGCTTGTTGAGTCCAGTGTGTCAGTGTGTGCCACTTCTCTCACAAACA CTGCGAGCTTGTCCCTATCCTGCAAGAAACAGCGGACCAAAGCATCCGCTCCATTTCTCC GCTAGTTCGTGCGTCGATCCAAACGCCAATCTTGGATTTCTGCCGCAAGGACTGTGCTTC TTGTAGCAAAAGCCCCCAAAGATTTGATCCAAGCCAGCTCGGAATCGGATCCCTGCGAGG ACCAGGCGGCCTGCCATGGCGTCCCGCTCCTACTCCAACCTCCTCGACCTGGCAACCGGA GCAGCGGACCAGGCGCCGGCGGTCGCGGCGCTTGGCGCGCTCCGGCGGCGGCTGCCGCGC GTGGTCACCACCCCCGGGCTCATCGACGACTCGCCGGCGTCGCCGTCCACGCCGCCGCGG CCGCGCACCATCATCGTGGCCAACCAGCTCCCGATCCGGTCCCACCGCCCGGAGTCGCCG GAGGAGCCCTGGACCTTCGAGTGGGACGAGGACTCCCTCCTCCGCCACCTCCACCACTCG TCGTCCCCCCTGATGGAGTTCATCTACATCGGCTGCCTGCGCGACGACATCCCGCAGGCC GAGCAGGACGCCGTCGCGCAGGCGCTCCTCGAGACCCACAACTGCGTGCCGGCCTTCCTG CCCACGGACATCGCCGAGCGCTACTACCACGGCTTCTGCAAGCAGCACCTGTGGCCCCTC TTCCACTACATGCTGCCGCTGTCCCCCGACCTCGGCGGCCGCTTCGACCGCGCGCTGTGG CAGGCCTACGTCTCGGCCAACAAGATCTTCGCGGACAAGGTGCTGGAGGTGATCAACCCG GACGACGACTTCGTGTGGGTGCACGACTACCACCTCATGGTGCTCCCAACCTTCCTGCGC AAGCGCTTCAACCGCATCAAGCTCGGCTTCTTCCTGCACTCGCCGTTCCCCTCGTCCGAG ATCTACAAGACGCTCCCCGTGCGCGAGGAGCTTCTGCGCGCCCTGCTCAACTCCGACCTC ATCGGCTTCCACACCTTCGACTACGCGCGCCACTTCCTCTCCTGCTGCGGCCGGATGCTC GGGCTCTCGTACGAGTCCAAGCGGGGGCACATTTGCCTCGAGTACTACGGCCGTACGGTG AGCATCAAGATCCTGCCTGTGGGGGTGCACATGGAGCAGCTCAAGACGGTGCTCGGGTTG CCGGAGACCGAGGCCAAGGTGTCCGAGCTGATGGAGATGTACTCTGGAAAGGGGAGAGTG GTCATGCTAGGCGTCGACGACATGGACATCTTCAAGGGGATCAGCCTCAAGCTCCTTGCC ATGGAGGAGCTTCTGCGGCAGCACCCCGAGTGGCGGGGGAAGCTGGTGCTGGTGCAGGTG GCCAACCCGGCGCGAGGGAGGGGGAAGGACGTCGCCGAGGTGCAGACCGAGACGTACGCC ATGGTGCGGCGCATCAACGAGGTGTACGGTGAGCCGGGGTACGAGCCGGTGGTCCTGATC GATGAGCCTCTGCAGTTCTACGAGCGCGTGGCCTACTACGTCATAGCCGAGGTGTGCCTG GTGACCGCGGTCAGGGACGGCATGAACCTGATTCCCTATGAGTACATCGTCTCCCGGCAG GGGAACGAGAAGCTGGACAGGATGCTGCGGCAGGGGAAGCCAGAGGAGAAGAAGAGCATG CTGGTGGTGTCCGAGTTCATCGGGTGCTCGCCGTCTCTGAGCGGCGCCATCAGGGTGAAC CCGTGGAACATCGAGGCCGTGGCTGACGCCATGGAGACCGCCCTTGTGCTGCCTGAGAAC GAGAAGAGGCTGCGCCACGATAAGCACTTCCGCTACGTGAGCACCCACGACGTCGGGTAC TGGGCTAACAGCTTCCTCCTGGACCTTGAGAGGACCTGCAAGTATCATTCTCAGAAGAGG TGCTGGGGCATTGGCTTCGGCCTGCGGTTCAGAGTGGTCTCGCTCGACCTGACCTTCAGG AAGCTTTCCTTGGAGAACATCCTTATGGCATACCGGAGAGCCAAGACACGGGCAATTCTG CTGGACTACGATGGCACGCTGATGCCACAGGCGATTAACAAGAGCCCGTCAACTGAATCT GTGCGGATCCTCAACAGCCTGTGCCGAGACAAGGACAATGTGGTGTACCTATGCAGCGGG TATGACCGGCGCACCCTTCATGAGTGGTTCCCTTGTGAGAACCTTGGCATAGCCGCGGAG CATGGCTACTTCCTGAGGTGTAAGAGGGACGCGGAATGGAAGACCTGTGTCGCTGCCACA GACTGCAGCTGGAAGCAGATCGCGGAGCCGGTGATGTGCCTGTACAGGGAGACGACGGAC GGCTCAACCATCGAGGACAGGGAGACGGTGCTCGTGTGGAACTACGAGGACGCGGACCCC GACTTCGGGTCGTGCCAGGCCAAGGAGCTCGTCGACCACCTTGAGAGCGTGCTCGCGAAC GAGCCTGTGTCGGTGAAGACCACGCCTCACTCAGTTGAAGTGAAACCGCAGGGCGTGAGC AAGGGCTTGGTGGCCCGGCGCATGCTTGTGTCGATGAAGGAGCGGGGCCAGTGCCCGGAC TTCGTCCTGTGCATCGGCGACGACAAGTCCGACGAGGACATGTTCCAGCTGATCGCCACC GCTGCCTGCGGGGACTCGCTGGCGTCCAAGGCGGAGGTGTTCGCGTGCACCGTCGGCCGC AAGCCCAGCAAGGCCAAGTACTACCTCGACGACGCGGCGGAGGTGGTGAGGCTGATGCAG GGGCTCTCCTACGTCTCCGAGGAGCTGGCGCTGGCGAACCAGCGGGATGAAGACGAGGAC TCCTCTCTGGACGACGTGTGGGAGTAGGAAGGAGCGTTCCCTTCCCGTGCTGCTCCTGCG GTAATGTCTGTTTGTGTTGGCTCGGCTGGAGCTTTCGCCGAGTAGTTTAGGTGTGTAAAT GAGGTATGCTTTCCAGCGTAATGTATTGCCAGTGGTCTAGTCTCGAGAGCTGGCTTGAAT CTAGTGATGCTC