Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028219_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:26903676:26908356:1 gene:Zm00001d028219 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATMAP70-2

Sequence

ATGGGTAGCTTGGGAGAGGTCGGTGATGGCAAGGAGATATTCCATGGCCATGGCCATTCT
GACCCTGTCGTCGACGAGCTCAACCGTCTGCAGAATCTCCTCAGAGAAAAGGAAAGAGAG
CTAGGACATGCATACAGTGAAATCAAAGGCTTGAAGGTGACGGAAGCTCTGAAGGACAAG
GCTATTGCTGAGCTGAGCAAGGAACTAAAGAGACAGGACGAGAGGATGAGAAGTATGGAG
AAACAACTTGAGCAGAAGAATCTAGAAGTGAAAAGACTAAATAACGAGCGTAAAGAAGCA
TTGTCTGCGCAGTTCGCTGCAGAGGCGACACTTAGAAGGATCCACTCTTCTCAAAAAGAT
GAGGAATCAGTTCCATTCGACGCCATCATAGCGCCCTTGGAGTCAGACATAAGAAAATAC
AGACATGAGATTGCAGTGCTACAAGATGACAAGAAGGCACTAGAACGACATCTAAAGTTG
AAGGAGGTGGCGCTTGTTGAAGCAGGCAACATTTTGCACACCGCGCTTGAAAGGGCACTC
ATAGTAGAGGATGTTCAGAATCAGAACATTGAATTGAAGAAGCATATGGAGATATACCAT
GAAGAGAATAAATTGTTAGAGAAGGCTAACAGACAGAAGGTGCTAGAGGTTGAGAAGCTC
ACACAAACAATTAATGAGCTTGAAGAGTCCATTCTCGCAACCGGTGAGGTTGCCAATGTG
GTCCACTTCTACCAGAATCAAGCTACAAAGTTGAATGAGGAAAAGAGGACCCTTGAGAGG
GAGCTAGCTCGAGCAAAGGTTTATGTCAATCGTGTTGCATCCACAGCAGCAAATGAATGG
AAAGATGACTCTGACAAGCTCATGCCAGTCAAGAGATGGCTAGAAGAACGAAGGCTCCTG
CAGGGAGAAATACAGCGATTGCGTGACAGGATAACAGTAGCAGAGAAATCTGCAAAGATT
GAAGCCCAACTTAATGATAAACTCAAAAGGAGGCTCAAGTCGCTTGAAGAGGATATGAGA
AATAAAACATCCAATTCGTCTACAAAAGAAATTAATAAACAAGCCACTCCTAAAAGATCA
TTGTCTCAACCAAAACAACCTAAAACAATGAGAGTGTTACCTCAACTATATTCACCTGAA
GTCGTTGACAAGAGAAGGCCTATATCTCAACCAAGGGCATCAATGGTAGGGAAAGTATTG
AAGCAACCTAATTCAGAAATCGAGCCTACAAAGAAAAGTACAGTTGTTAAGCGATTTGAT
AGCCCTGGAAGGAGAACAATTTCTAGTAAAGAAGAGTGTCCCATGAAAAATCAACTATGG
GCATCAAAAACCAAAACAGATGTTATTGTTGGGAAAGAGAACAAAGTACAAAAGCCAAAT
TCCAAGGCACGTTTAAATGCTTCACATTCACAAGGCCATGTGGACACAAAAGTATTTGAT
GGAAATGATGAATATGGACTTCAAAATAGTGAACATCATGAAGCCATGGCAAATGAGAGA
AATGGGAATAGCTCGAGTGATGAAAGTAGCCCTTAG

Peptide Sequence

PEP ID

Zm00001d028219_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:26903676:26908356:1 gene:Zm00001d028219 transcript:Zm00001d028219_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATMAP70-2

Sequence

MGSLGEVGDGKEIFHGHGHSDPVVDELNRLQNLLREKERELGHAYSEIKGLKVTEALKDK
AIAELSKELKRQDERMRSMEKQLEQKNLEVKRLNNERKEALSAQFAAEATLRRIHSSQKD
EESVPFDAIIAPLESDIRKYRHEIAVLQDDKKALERHLKLKEVALVEAGNILHTALERAL
IVEDVQNQNIELKKHMEIYHEENKLLEKANRQKVLEVEKLTQTINELEESILATGEVANV
VHFYQNQATKLNEEKRTLERELARAKVYVNRVASTAANEWKDDSDKLMPVKRWLEERRLL
QGEIQRLRDRITVAEKSAKIEAQLNDKLKRRLKSLEEDMRNKTSNSSTKEINKQATPKRS
LSQPKQPKTMRVLPQLYSPEVVDKRRPISQPRASMVGKVLKQPNSEIEPTKKSTVVKRFD
SPGRRTISSKEECPMKNQLWASKTKTDVIVGKENKVQKPNSKARLNASHSQGHVDTKVFD
GNDEYGLQNSEHHEAMANERNGNSSSDESSP

Transcript Sequence

Transcript ID

Zm00001d028219_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:26903676:26908356:1 gene:Zm00001d028219 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATMAP70-2

Sequence

GCAGTTCTTCGTATCCACACCGCATCTAGCTAGCTTGTGGCCAAGTGTTCGAGATAGCAT
TGCCGGCCGGGGGGAGCAAGAGATATGGGTAGCTTGGGAGAGGTCGGTGATGGCAAGGAG
ATATTCCATGGCCATGGCCATTCTGACCCTGTCGTCGACGAGCTCAACCGTCTGCAGAAT
CTCCTCAGAGAAAAGGAAAGAGAGCTAGGACATGCATACAGTGAAATCAAAGGCTTGAAG
GTGACGGAAGCTCTGAAGGACAAGGCTATTGCTGAGCTGAGCAAGGAACTAAAGAGACAG
GACGAGAGGATGAGAAGTATGGAGAAACAACTTGAGCAGAAGAATCTAGAAGTGAAAAGA
CTAAATAACGAGCGTAAAGAAGCATTGTCTGCGCAGTTCGCTGCAGAGGCGACACTTAGA
AGGATCCACTCTTCTCAAAAAGATGAGGAATCAGTTCCATTCGACGCCATCATAGCGCCC
TTGGAGTCAGACATAAGAAAATACAGACATGAGATTGCAGTGCTACAAGATGACAAGAAG
GCACTAGAACGACATCTAAAGTTGAAGGAGGTGGCGCTTGTTGAAGCAGGCAACATTTTG
CACACCGCGCTTGAAAGGGCACTCATAGTAGAGGATGTTCAGAATCAGAACATTGAATTG
AAGAAGCATATGGAGATATACCATGAAGAGAATAAATTGTTAGAGAAGGCTAACAGACAG
AAGGTGCTAGAGGTTGAGAAGCTCACACAAACAATTAATGAGCTTGAAGAGTCCATTCTC
GCAACCGGTGAGGTTGCCAATGTGGTCCACTTCTACCAGAATCAAGCTACAAAGTTGAAT
GAGGAAAAGAGGACCCTTGAGAGGGAGCTAGCTCGAGCAAAGGTTTATGTCAATCGTGTT
GCATCCACAGCAGCAAATGAATGGAAAGATGACTCTGACAAGCTCATGCCAGTCAAGAGA
TGGCTAGAAGAACGAAGGCTCCTGCAGGGAGAAATACAGCGATTGCGTGACAGGATAACA
GTAGCAGAGAAATCTGCAAAGATTGAAGCCCAACTTAATGATAAACTCAAAAGGAGGCTC
AAGTCGCTTGAAGAGGATATGAGAAATAAAACATCCAATTCGTCTACAAAAGAAATTAAT
AAACAAGCCACTCCTAAAAGATCATTGTCTCAACCAAAACAACCTAAAACAATGAGAGTG
TTACCTCAACTATATTCACCTGAAGTCGTTGACAAGAGAAGGCCTATATCTCAACCAAGG
GCATCAATGGTAGGGAAAGTATTGAAGCAACCTAATTCAGAAATCGAGCCTACAAAGAAA
AGTACAGTTGTTAAGCGATTTGATAGCCCTGGAAGGAGAACAATTTCTAGTAAAGAAGAG
TGTCCCATGAAAAATCAACTATGGGCATCAAAAACCAAAACAGATGTTATTGTTGGGAAA
GAGAACAAAGTACAAAAGCCAAATTCCAAGGCACGTTTAAATGCTTCACATTCACAAGGC
CATGTGGACACAAAAGTATTTGATGGAAATGATGAATATGGACTTCAAAATAGTGAACAT
CATGAAGCCATGGCAAATGAGAGAAATGGGAATAGCTCGAGTGATGAAAGTAGCCCTTAG
AACAACAAGACAAGTTGGAGTGTTGGGGTTTACTTTTGCATGAAGACACAAAATGGAAGC
ACAAATAACATTATTATGTACAGATGTAGCATGACTTATTTTAAAGGAAGCGTGTGCCCA
TCTACATCTATTTTATTCTGCCCGGGAGATTGCTTGAACAACAAAACTAGTTGTGGTGTC
ATCATTTTGTTTTGTCTCTTTGTTCTCTCATGTACATACAAACTATACCTCAAACTTTAC
AAATGTAATTTTGTGCGACTATTGAAAAAATCAATATGTGCTTTTTTGAGGAATTGGTTA
CTTTATAAAATAAAAAGGTGTCTAATGTAATAGAAGCAACAGAGAAAAAAGTGAAGGGTG
TGAATCAATAAAACCATGGATGTTGAATGT