Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028204_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:1:26173789:26181115:1 gene:Zm00001d028204 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expressed protein; protein
Sequence

ATGGCTCGCGTGGAGAGGCAGCCGCGGAACCCTAGTAGGCTCGCCCCCACCTCCCACCCG
GCGCCGGCGCTTCCGACGACGCCGGCTGCTCGCCGCCCCGGCACGCCACGGAACGCTGCC
CAGCTTTTCGTTTGTTTTTGCTCTACTACTCAGGGCACAGTTTGTGCAACATGTGTTTGC
GGTTCAGGAAATAATGCCCGCTGTCACTGCAAGCAAGACGCAAGATCCAGACATAACCAA
ACACACCACGGTAATGATGGAACAGCCACAGCCGGGGGAATTGCAAAACCAGACTCTCAA
GATAAGCTCAAGATGGCTAGATTTTCTGGTGGTACATATTCAAAACCTGATGCAAGAGTG
AAGCTGATTCCTGCAGAAGATATTACCTATTTACAGCGTCGGAAACCATGTGGTAGAACT
GTTGGGTCAGTTGGGTCACAGAAAAGACATTGCAGAAGAAGTGTCACACCACCTCCAAGT
TCACGAAGAGTGTCTCTCCTAGGATCTAGATCGCTTGCTGAAAATCCTATCCCATCAGTG
TCATCCCATGACTCGTGTTTACCCCATAAGAGGCTTGAGACAGCTGAAAATAGGGACCCA
TGTGCTGGGGGGCACATAAGTAGCTCTGTGACTCCCTGCACTTCTTTGAAAAACCTTGCA
TCACCGAGTTGCAAATCCTCACAACCTTTGAGTACTAATTTGAATACTGATGCTACTCCA
AGAAATTTAGACAGAATGGTAGGCATACAAACACAAGCACTCGCCAGGAGCTCCAGTTCG
AGTATTTTGCATTCTCAAGGCCAGAACAGTGAAAAAGTGTCTGCTAGTTTGCCAAAAGAG
GCAGTGACAAATCCTGCGTCTCCTAGTCCCAAGCAAATTGGTGCTCAACATCCAAGTGAC
AATCCTCTTGTTACGAAGGCAGGACCTTCTAAGAGTGTGTGCACACATGAGAGTGAAAAG
TTGTGCAGCAGAGACATCAATTTAACTGCAACAAGTACTACAGTTCCTGTCTTGCAAGCT
CCTGTTGTGGAGCCTGCATTGCTAAGCTCAACATCTGTGTTCACTGAAAGGCCCTTTGAG
GTTTATCCTGACACAAGAACTGCTGCTCCTGGCATGCAGGAACTTAGTGTGAAGCATGTG
TTGCTGACCCCAATACCTGTGCGTCATGAACCTTCTACGGAGTGCCTAAAGGTTCCTCCA
AAACACAGCCTGCATTCCATTGCATCTGCGCAACATGGTGCATTGTCGCAAGAAAGAAAC
TCAGGGGCATCAATTAGCCATGGCAGATCTTCAGCTTCAGGTGCACTATCAATCTTACAT
ATGAAGCTGGCCAAGAAGCATTATCAATCACAAGCCTGCTGGAAGGGCAACTTTCATGTT
ACTGGAGGACTGATACATACTTGTGATGGACTTGAAGCCCATTTCCCTTTAGAAATTTCT
GTAAGAGTTTATGAAGCTTCAAACCAAATGCCTGAAATTTTAAATCTAGAGGCTGTACCT
ATTTCCCAGCTGTGGCCAAAAAAATTCAAGATGGTACCTCCCGACATTGAGGATATTGGA
CTATGGTTTCTGAGCAGTCGCCAAAGGCCACACTGGAGTTTTGATCACCTTCTTGAAAAA
GTTTGTTCACATACTGGTCTGTTCACAAAAATTGGTGATATTGAGTTGGCAGTGTTTTCA
TCGAAGTTGCTTACACCACAAGATCAGAGGAAAGATGGCAAATTATATTTCTGGGGTGTT
TTTGGGAAGCATATGAGGAAGAAGTCATGCCAACCAAACAGTCATATAAAAAATGTGGAG
ATAAGCAATCCCAGTCAACCAAATGGCAAATCTGAGGAAGTAGGCATGAAATTGGATATG
AGAAAAGGCAAAGAAAAAGAGAGTGCTAAATCTGACGAGGTATTGGATTCAACAGGAGGC
AATGATACCGATAGGGTCAATGGCTGCGTGGCAGTGCTTGAGGCTCCTGATTCAGACCCT
GCATCCAGTTGCTCGGTTCCGGCTGCCTCTTCTCTTGGCGGATATTGCCATCATGACTCT
GCAAAAAATAGCTCTTCTATCTTAGATTCTTCATGCCAGCCTGCTGACGGATCTTCTGTT
AGCCCAGACCTCATGCTGGACATACCCCCTGGAATTTCTGCGCATATACCTCCTGGCTTC
ACAAAAGCCCACTGTCAGCTTCAGATGGGAACTGCTGCTCTGTCTTTTGCTGATAGGCAT
CGCAGTCTGATTTCGGACATTCCTCCAGGCTTTACTGAAGTTCATCGTGGACTCCCTCCT
GCAATTCCACCTGCTGGACCAGCTTGTGTGTCGACCCCTGGGACTGAAAAGAAGCCCTTC
GTTAGGTTCTCGCTTAATGTCCCAAGGCCTGTTGGAATGGGAGCTCCACCTGGATTTACT
CCACTGCATGCAGTGAAGAAAGAGCCTGGGCTGCCTGATGTCCATGAGACCGCAGATAAG
CACACACTACATTCTTTGGCAGCTGCGGCAGCTGCAGTGGTTAAGCCTGGGAAAGGAGGT
GAAATGAAAATCGCAGACAATGAGGTAAAGACTGAACAAGATGAAAACTCAGAGGAACGA
GATTTTCCAAAGATCAGGAGGCTTTCAGACCTGTACTGTAGGCCTTCGGAGGACAGCACT
GAATTTTCCCAGCGTATGCCTGCACGCTTGCCCGACAAGTTTCAGGAGCAGAGACCCGAG
AAACGTCTTGTGCATCCACGGGAGGAGGTCGGGCGGCGATGA

Peptide Sequence

PEP ID

Zm00001d028204_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:1:26173789:26181115:1 gene:Zm00001d028204 transcript:Zm00001d028204_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expressed protein; protein
Sequence

MARVERQPRNPSRLAPTSHPAPALPTTPAARRPGTPRNAAQLFVCFCSTTQGTVCATCVC
GSGNNARCHCKQDARSRHNQTHHGNDGTATAGGIAKPDSQDKLKMARFSGGTYSKPDARV
KLIPAEDITYLQRRKPCGRTVGSVGSQKRHCRRSVTPPPSSRRVSLLGSRSLAENPIPSV
SSHDSCLPHKRLETAENRDPCAGGHISSSVTPCTSLKNLASPSCKSSQPLSTNLNTDATP
RNLDRMVGIQTQALARSSSSSILHSQGQNSEKVSASLPKEAVTNPASPSPKQIGAQHPSD
NPLVTKAGPSKSVCTHESEKLCSRDINLTATSTTVPVLQAPVVEPALLSSTSVFTERPFE
VYPDTRTAAPGMQELSVKHVLLTPIPVRHEPSTECLKVPPKHSLHSIASAQHGALSQERN
SGASISHGRSSASGALSILHMKLAKKHYQSQACWKGNFHVTGGLIHTCDGLEAHFPLEIS
VRVYEASNQMPEILNLEAVPISQLWPKKFKMVPPDIEDIGLWFLSSRQRPHWSFDHLLEK
VCSHTGLFTKIGDIELAVFSSKLLTPQDQRKDGKLYFWGVFGKHMRKKSCQPNSHIKNVE
ISNPSQPNGKSEEVGMKLDMRKGKEKESAKSDEVLDSTGGNDTDRVNGCVAVLEAPDSDP
ASSCSVPAASSLGGYCHHDSAKNSSSILDSSCQPADGSSVSPDLMLDIPPGISAHIPPGF
TKAHCQLQMGTAALSFADRHRSLISDIPPGFTEVHRGLPPAIPPAGPACVSTPGTEKKPF
VRFSLNVPRPVGMGAPPGFTPLHAVKKEPGLPDVHETADKHTLHSLAAAAAAVVKPGKGG
EMKIADNEVKTEQDENSEERDFPKIRRLSDLYCRPSEDSTEFSQRMPARLPDKFQEQRPE
KRLVHPREEVGRR

Transcript Sequence

Transcript ID

Zm00001d028204_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:26173789:26181115:1 gene:Zm00001d028204 gene_biotype:protein_coding transcript_biotype:protein_coding description:Expressed protein; protein
Sequence

ACTGCAGTCTGCGCACACCCAAACCACCCCGCCACACAAAGAGCAAAACCCTCTTTCTCT
GCCCCTCAGTCACCGCCGCGAACTTGCGTCTTGCGATCGAGGGAGGAACCCACCAAATGG
CTCGCGTGGAGAGGCAGCCGCGGAACCCTAGTAGGCTCGCCCCCACCTCCCACCCGGCGC
CGGCGCTTCCGACGACGCCGGCTGCTCGCCGCCCCGGCACGCCACGGAACGCTGCCCAGC
TTTTCGTTTGTTTTTGCTCTACTACTCAGGGCACAGTTTGTGCAACATGTGTTTGCGGTT
CAGGAAATAATGCCCGCTGTCACTGCAAGCAAGACGCAAGATCCAGACATAACCAAACAC
ACCACGGTAATGATGGAACAGCCACAGCCGGGGGAATTGCAAAACCAGACTCTCAAGATA
AGCTCAAGATGGCTAGATTTTCTGGTGGTACATATTCAAAACCTGATGCAAGAGTGAAGC
TGATTCCTGCAGAAGATATTACCTATTTACAGCGTCGGAAACCATGTGGTAGAACTGTTG
GGTCAGTTGGGTCACAGAAAAGACATTGCAGAAGAAGTGTCACACCACCTCCAAGTTCAC
GAAGAGTGTCTCTCCTAGGATCTAGATCGCTTGCTGAAAATCCTATCCCATCAGTGTCAT
CCCATGACTCGTGTTTACCCCATAAGAGGCTTGAGACAGCTGAAAATAGGGACCCATGTG
CTGGGGGGCACATAAGTAGCTCTGTGACTCCCTGCACTTCTTTGAAAAACCTTGCATCAC
CGAGTTGCAAATCCTCACAACCTTTGAGTACTAATTTGAATACTGATGCTACTCCAAGAA
ATTTAGACAGAATGGTAGGCATACAAACACAAGCACTCGCCAGGAGCTCCAGTTCGAGTA
TTTTGCATTCTCAAGGCCAGAACAGTGAAAAAGTGTCTGCTAGTTTGCCAAAAGAGGCAG
TGACAAATCCTGCGTCTCCTAGTCCCAAGCAAATTGGTGCTCAACATCCAAGTGACAATC
CTCTTGTTACGAAGGCAGGACCTTCTAAGAGTGTGTGCACACATGAGAGTGAAAAGTTGT
GCAGCAGAGACATCAATTTAACTGCAACAAGTACTACAGTTCCTGTCTTGCAAGCTCCTG
TTGTGGAGCCTGCATTGCTAAGCTCAACATCTGTGTTCACTGAAAGGCCCTTTGAGGTTT
ATCCTGACACAAGAACTGCTGCTCCTGGCATGCAGGAACTTAGTGTGAAGCATGTGTTGC
TGACCCCAATACCTGTGCGTCATGAACCTTCTACGGAGTGCCTAAAGGTTCCTCCAAAAC
ACAGCCTGCATTCCATTGCATCTGCGCAACATGGTGCATTGTCGCAAGAAAGAAACTCAG
GGGCATCAATTAGCCATGGCAGATCTTCAGCTTCAGGTGCACTATCAATCTTACATATGA
AGCTGGCCAAGAAGCATTATCAATCACAAGCCTGCTGGAAGGGCAACTTTCATGTTACTG
GAGGACTGATACATACTTGTGATGGACTTGAAGCCCATTTCCCTTTAGAAATTTCTGTAA
GAGTTTATGAAGCTTCAAACCAAATGCCTGAAATTTTAAATCTAGAGGCTGTACCTATTT
CCCAGCTGTGGCCAAAAAAATTCAAGATGGTACCTCCCGACATTGAGGATATTGGACTAT
GGTTTCTGAGCAGTCGCCAAAGGCCACACTGGAGTTTTGATCACCTTCTTGAAAAAGTTT
GTTCACATACTGGTCTGTTCACAAAAATTGGTGATATTGAGTTGGCAGTGTTTTCATCGA
AGTTGCTTACACCACAAGATCAGAGGAAAGATGGCAAATTATATTTCTGGGGTGTTTTTG
GGAAGCATATGAGGAAGAAGTCATGCCAACCAAACAGTCATATAAAAAATGTGGAGATAA
GCAATCCCAGTCAACCAAATGGCAAATCTGAGGAAGTAGGCATGAAATTGGATATGAGAA
AAGGCAAAGAAAAAGAGAGTGCTAAATCTGACGAGGTATTGGATTCAACAGGAGGCAATG
ATACCGATAGGGTCAATGGCTGCGTGGCAGTGCTTGAGGCTCCTGATTCAGACCCTGCAT
CCAGTTGCTCGGTTCCGGCTGCCTCTTCTCTTGGCGGATATTGCCATCATGACTCTGCAA
AAAATAGCTCTTCTATCTTAGATTCTTCATGCCAGCCTGCTGACGGATCTTCTGTTAGCC
CAGACCTCATGCTGGACATACCCCCTGGAATTTCTGCGCATATACCTCCTGGCTTCACAA
AAGCCCACTGTCAGCTTCAGATGGGAACTGCTGCTCTGTCTTTTGCTGATAGGCATCGCA
GTCTGATTTCGGACATTCCTCCAGGCTTTACTGAAGTTCATCGTGGACTCCCTCCTGCAA
TTCCACCTGCTGGACCAGCTTGTGTGTCGACCCCTGGGACTGAAAAGAAGCCCTTCGTTA
GGTTCTCGCTTAATGTCCCAAGGCCTGTTGGAATGGGAGCTCCACCTGGATTTACTCCAC
TGCATGCAGTGAAGAAAGAGCCTGGGCTGCCTGATGTCCATGAGACCGCAGATAAGCACA
CACTACATTCTTTGGCAGCTGCGGCAGCTGCAGTGGTTAAGCCTGGGAAAGGAGGTGAAA
TGAAAATCGCAGACAATGAGGTAAAGACTGAACAAGATGAAAACTCAGAGGAACGAGATT
TTCCAAAGATCAGGAGGCTTTCAGACCTGTACTGTAGGCCTTCGGAGGACAGCACTGAAT
TTTCCCAGCGTATGCCTGCACGCTTGCCCGACAAGTTTCAGGAGCAGAGACCCGAGAAAC
GTCTTGTGCATCCACGGGAGGAGGTCGGGCGGCGATGATGCCTGCAAAGGGGCCGATGGC
AGCATCGCCAGGTGGTCGTCTGGATAGCGAGTGCGTTGTATGTGGTGAAGAGTTCCCCGC
AGAGTGATTTCTAGGATTACCTCGACAAAGGGTACTAGACTGCTTTGTGTTAGTGATTAT
CCTGTTCAGCGGCAATGATGTACATGCCTGGACAATTAGCATGCTGAGCTTGTGCGTACA
GGCCAGCACTTATCGTGAAGTCCGTGCTACATCATCGAAACGGTTAACGATATTGGGTAG
TTTTGGTGAAACCCATGCATCAAATGTGATGGTCGAGCAGCATTACTGTTTTTATAGTGG
G