Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d028186_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:1:25742203:25745382:1 gene:Zm00001d028186 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGGCTACGGTTTGGAGCGGCTGCAGCACGAGCTGCGGCTCCTTCGGCCAAGAACTGCCC CCGCGCGGCAAACGGGGCGGTGGTGAGGGCACAAGATTCCTTCCGCGAAGGAGAGGCCGG ATCAGAGGTGACGCCCGCCAGACACAAGCTCTAAGCGCCGCCATGGTTACGGTCGGAGCT TGCGTTTGTAGAGCGGCTCCATGCTTGCTTGATTCGGTGGTCGACGGGACGGAGGACGTC AGCGTTGGGTTTGGGGGCATCGACGGTGAACCGCTCGCCGATGGGTATGATGGTGGCAAG AGGCGCGGTCCGCGTCGGCGTCCGACGAGGCCGACCGTTTTTCAGAAGGAGGTGGGCGCA AGAACTGCTCCACCGGCGATGGCGTCGGAGCCGGACAGCAAATCTGAGCATGGGGTGTCG AGGCTGCACTTCCTGGAGGAGAGGGACGAGGAGACGCTGTCAAGAAGGTTGATAAAGCTC AGCCAAAACAACAAGGTCAGAAGTGCCACTGAGCTGTTTGATTCAATGCGCGCATCTGGG CTGCAACCGAGCGCACATGCCTGCAACTCCCTGTTGGCTTGCTATGTGCGTAGAAGTCCA CTGGCGGATGCAATGAGGATGTTTGAGTTCATGAAGGCGAAAGGAATGGCGACAGGGCAC ACGTATACCATGATACTCAAGGCTGTTGCGAGCAATCAGGGTTATGTTTCTGCACTGGAA ATGTTCGATAAGATTGAGGAGGAGGAGGGTTCAAAGAAAATCATTGACGTAATTGTTTAT AATACGATGATATCTGTTTGTGGAAGAGCGAAAGAATGGATGCTTGTGGAGAGACTATGG AGAAGGCTAGAGCAACATTCTTTGAATGGAACTTTACTGACATACGATTTGTTAGTCAGC ATATTCGTGCAATGTGGGCAGTCTGAGTTAGCAATTGCTGCATATCAGGAAATGCTCCAG AAGGGACTTGATCCGAGCGAGGATATAATGAAGGCTATCATTGCATCCTGCACTAAAGAA GGGAAATGGGAGTTTGCAATGTCAACATTTAGTAGAATGCTGAGGGCTGGCATGAAACCC AGTTTAATTTTGTTCAACTCAATCATCAACTCACTGGGGAAGGCTGGTCAAGATGAACTC GCCTTTAGGATGTACCATCTGCTGGAAAAATCAGGCCTTAAGCCTGATCAATATACATGG AGCGCACTGTTGTTGGCATTATACAGGTCCGGGCGATGCTGGGATTGCCTAAAGCTTTTC CATGGAATCAAAGGCAAGCATCCGACACTCTTAAATGATCATCTCTACAACACTGCTTTG ATGTCCTGCGAAAAGCTTGGTCAATGGGAACATGGTTTGCAGCTGCTGTGGTTGATGGAA AAAAGAGGACTGAAATTATCAGTGGTATCTTACAATCATGTGATAGGTGCTTGTGAGGTT GCTAGCAAGCCAAAAGTTGCTCTTAAAGTGTACCAGCGCATGATTAATCAGAGGTGTTCG CCAGACACATTCACACATTTGTCTGTTATACGAGCTTGCATCTGGGGATCTCTTTGGACT GAAGTAGAGGATATATTGGAGGAGGTGGCTCCAGACTCTTCGATCTACAACGCGGTCATC CACGGGCTGTGTTTGCGAGGCAAGACCGGGCTAGCCAACAAGGTGTACGCCAAGATGCGG AGCATGGGGCTGGTACCGGACGGCAAGACGAGAGCGTTCATGCTGCAGCACATTGCTACG GACTAG

Peptide Sequence

PEP ID	Zm00001d028186_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:1:25742203:25745382:1 gene:Zm00001d028186 transcript:Zm00001d028186_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MATVWSGCSTSCGSFGQELPPRGKRGGGEGTRFLPRRRGRIRGDARQTQALSAAMVTVGA CVCRAAPCLLDSVVDGTEDVSVGFGGIDGEPLADGYDGGKRRGPRRRPTRPTVFQKEVGA RTAPPAMASEPDSKSEHGVSRLHFLEERDEETLSRRLIKLSQNNKVRSATELFDSMRASG LQPSAHACNSLLACYVRRSPLADAMRMFEFMKAKGMATGHTYTMILKAVASNQGYVSALE MFDKIEEEEGSKKIIDVIVYNTMISVCGRAKEWMLVERLWRRLEQHSLNGTLLTYDLLVS IFVQCGQSELAIAAYQEMLQKGLDPSEDIMKAIIASCTKEGKWEFAMSTFSRMLRAGMKP SLILFNSIINSLGKAGQDELAFRMYHLLEKSGLKPDQYTWSALLLALYRSGRCWDCLKLF HGIKGKHPTLLNDHLYNTALMSCEKLGQWEHGLQLLWLMEKRGLKLSVVSYNHVIGACEV ASKPKVALKVYQRMINQRCSPDTFTHLSVIRACIWGSLWTEVEDILEEVAPDSSIYNAVI HGLCLRGKTGLANKVYAKMRSMGLVPDGKTRAFMLQHIATD

Transcript Sequence

Transcript ID	Zm00001d028186_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:25742203:25745382:1 gene:Zm00001d028186 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	GCGGTTACTCCCCGCCACGCCTCTCCAATCCATCTGGAAGCGCAATTTTCACCAGTTCTG TCGATTTGCCCCCCTTTTTTTGGATTTGTTCCTCTCAGTCTTTCCAAGATCAGCGAAGAG AGCCCCGCGTGTTGATGAAATATTTGGATTTCGTTACTATTCGCGTCGGCCATGGCTACG GTTTGGAGCGGCTGCAGCACGAGCTGCGGCTCCTTCGGCCAAGAACTGCCCCCGCGCGGC AAACGGGGCGGTGGTGAGGGCACAAGATTCCTTCCGCGAAGGAGAGGCCGGATCAGAGGT GACGCCCGCCAGACACAAGCTCTAAGCGCCGCCATGGTTACGGTCGGAGCTTGCGTTTGT AGAGCGGCTCCATGCTTGCTTGATTCGGTGGTCGACGGGACGGAGGACGTCAGCGTTGGG TTTGGGGGCATCGACGGTGAACCGCTCGCCGATGGGTATGATGGTGGCAAGAGGCGCGGT CCGCGTCGGCGTCCGACGAGGCCGACCGTTTTTCAGAAGGAGGTGGGCGCAAGAACTGCT CCACCGGCGATGGCGTCGGAGCCGGACAGCAAATCTGAGCATGGGGTGTCGAGGCTGCAC TTCCTGGAGGAGAGGGACGAGGAGACGCTGTCAAGAAGGTTGATAAAGCTCAGCCAAAAC AACAAGGTCAGAAGTGCCACTGAGCTGTTTGATTCAATGCGCGCATCTGGGCTGCAACCG AGCGCACATGCCTGCAACTCCCTGTTGGCTTGCTATGTGCGTAGAAGTCCACTGGCGGAT GCAATGAGGATGTTTGAGTTCATGAAGGCGAAAGGAATGGCGACAGGGCACACGTATACC ATGATACTCAAGGCTGTTGCGAGCAATCAGGGTTATGTTTCTGCACTGGAAATGTTCGAT AAGATTGAGGAGGAGGAGGGTTCAAAGAAAATCATTGACGTAATTGTTTATAATACGATG ATATCTGTTTGTGGAAGAGCGAAAGAATGGATGCTTGTGGAGAGACTATGGAGAAGGCTA GAGCAACATTCTTTGAATGGAACTTTACTGACATACGATTTGTTAGTCAGCATATTCGTG CAATGTGGGCAGTCTGAGTTAGCAATTGCTGCATATCAGGAAATGCTCCAGAAGGGACTT GATCCGAGCGAGGATATAATGAAGGCTATCATTGCATCCTGCACTAAAGAAGGGAAATGG GAGTTTGCAATGTCAACATTTAGTAGAATGCTGAGGGCTGGCATGAAACCCAGTTTAATT TTGTTCAACTCAATCATCAACTCACTGGGGAAGGCTGGTCAAGATGAACTCGCCTTTAGG ATGTACCATCTGCTGGAAAAATCAGGCCTTAAGCCTGATCAATATACATGGAGCGCACTG TTGTTGGCATTATACAGGTCCGGGCGATGCTGGGATTGCCTAAAGCTTTTCCATGGAATC AAAGGCAAGCATCCGACACTCTTAAATGATCATCTCTACAACACTGCTTTGATGTCCTGC GAAAAGCTTGGTCAATGGGAACATGGTTTGCAGCTGCTGTGGTTGATGGAAAAAAGAGGA CTGAAATTATCAGTGGTATCTTACAATCATGTGATAGGTGCTTGTGAGGTTGCTAGCAAG CCAAAAGTTGCTCTTAAAGTGTACCAGCGCATGATTAATCAGAGGTGTTCGCCAGACACA TTCACACATTTGTCTGTTATACGAGCTTGCATCTGGGGATCTCTTTGGACTGAAGTAGAG GATATATTGGAGGAGGTGGCTCCAGACTCTTCGATCTACAACGCGGTCATCCACGGGCTG TGTTTGCGAGGCAAGACCGGGCTAGCCAACAAGGTGTACGCCAAGATGCGGAGCATGGGG CTGGTACCGGACGGCAAGACGAGAGCGTTCATGCTGCAGCACATTGCTACGGACTAGGAC CAGCCTCGTGAAAGGCCAAGACTGACGATCTCCTCGTAGCTGCACGCAGCCCCCGAATGA AATGGGCGTACGCGCATGTATGTACAGGATCAAAGGTGTGGTGGAGCAGAGTTGTCGGGC TGGGTACTGTGTACAACAGGATCAAAGCATGGACCAAGCGGAAGCTAGCAATGCCGGTGT TTACAGAATCTGACACTTGCCAAGGTTCCTTTGCGTTCCAACGTGGATGTCATTCATTCT GGGCGTGTTTGCCGCCATGGCGCAGCAGCCTGGCTGCGCTCTCGGGCTGCAGCTCCCGTG TTTGCGTCGCCTGGCTTGCTCGGGAGCCAGGCTGTGGGCGTGCAAATTTAGCCTCTCAGC CTGGCTCCACAGAAACGAGCTCAAGGTCCGTTTCTTGGGAGACTGGCTGCTCGTGGCGCA AGGATTCCGCGTTTAGGTAGTTTTGGTCTTCTAGTCCGGCTGTATATTGGGTGACAAACA TCAGCTCGTCTGAGCCAGACTCATATGGTACAAGTGT