Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028164_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:1:24946609:24951403:1 gene:Zm00001d028164 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sulfate transporter 2.2
Sequence

ATGCCAACCGTACCGCAAGATTCTCCGTCCAGCCGCCAGAACCAAGAAACCCTTTTAAAG
CCAAGGGAGCTCCAGCTCCCGAGTTTCCCCAAACACTTCATCCAGGCTCCAGCCATGGAG
GCCTCGGCAGCGGTCGAGTCGTCGGCCGCCGTGTCTGTCTTCGAGGTAGTATCCAGCAAG
CAGCGGCGGCCGCCGGACACGGCGAAGCTGGTGCTGAATAGCCCCAGCCCGCCGAGCCTG
CGGGAGGAGCTCGTCGGCGTGGTCGGCAAGGCGTTCCGGCCGCGCGCCCACGCCGGGGCC
GCTGCTGGCGCCGGTGGCCGCCCGCCGCCGCGCCGCGCGTGGGTCCTCACGGCGCTGCAG
TGCGTGTTCCCGGTGCTGCAGTGGGGGAGGAGCTACACCCTCGAGTCCTTCAGGAGTGAC
GTCATGGCCGGCCTCACTCTTGCCAGCCTTGGCATCCCTCAGAGCATTGGATACGCCAAT
CTAGCCAAGCTGGACCCTCAGTACGGTCTTTACACGAGCGTCGTGCCACCGCTGATCTAC
GCTGTGATGGGGACATCGAGGGAGATCGCCATCGGGCCAGTCGCCGTCGTCTCGCTGCTG
CTGTCCTCGATGATCCAGAAGGTCGTCGACCCGGCCGCCGACCCGGCGACCTACAGGTCG
CTCGTCTTCACGGTGACTTTCCTCGCCGGGGTCTTCCAGGTCTCCTTCGGCCTCTTCAGG
CTGGGGTTTCTCGTGGATTTCCTGTCGCACGCTGCCATCGTGGGGTTCATGGGCGGGGCG
GCCATCGTGATCGGGATGCAGCAGCTCAAGGGGCTGCTTGGCCTCGCCCATTTCACCAAC
AGCACCGATGTTGTTTCTGTCCTCAAGGCTGTCTGCTCTGCGCTACGACATGACCCGTGG
CACCCGGGCAACTTCCTCATCGGATGCTCCTTCCTCATATTCATCCTCACCACACGGTTC
ATCGGGAGGAGGTACAAGAAGCTGTTCTGGCTGTCAGCGATCTCGCCTCTGCTGTCGGTC
ATCCTGTCCACCGCTGCGGTCTACGCGACAAGGGCTGACAGGCACGGCGTCAAGATCATC
CAGAAGGTGCACGCGGGCCTAAACCCAAGCTCCGTGAAGCAGATACACCTCAACGGGCCG
CACACAACGGAGTGCGCCAAGATCGCCGTCATCTGCGCAGTCATCGCCCTCACGGAAGCT
ATCGCCGTTGGCCGATCTTTCGCCTCCGTAAGAGGGTACAGACTCGACGGCAACAAGGAG
ATGCTGGCCATGGGGTTCTCCAACGTTGCTGGTTCTCTGTCCTCGTGCTATGTGGCAACA
GGTTCGTTCTCCCGAACGGCAGTGAACTTCAGCGCGGGGGCCAGGTCGACCGTTTCAAAC
ATCGTCATGTCCATCACCGTGTTCGTCACCCTGGAGCTGTTCATGAAGCTCCTCTACTAC
ACGCCCATGGCGGTGCTCGCCTCCATCATCCTGTCGGCTCTTCCGGGACTGATCGACATC
AAGGAGGCCTGCAGCATATGGAAGATCGACAAGATGGATTTCCTCACCTGCCTCGGTGCG
TTTGTTGGCGTCCTGTTTGGGTCGGTGGAGATTGGGCTTGCAGTTGCACTTGGCATTTCC
TTCGCAAAGATCATCATACAGTCGCTTCGGCCTCAGGTGGAGATCCTTGGCAGGCTACAA
GGGACAGATATCTTCTGCAGCGTCAGGCAGTACCCTGTAGCCTGCCTAACTCCGACTGTA
CTGCCTATACGCGTCGACACATCCTTCCTCTGCTTCATCAACGCCACTTCCGTCAAAGAA
AGGATCACAGAGTGGGTTTGGGAAGGAGTGGAGACCTCAAATGGAAAAGCGAGGGAGAGG
ATACAAGCAGTTGTCCTTGATATGTCAAGTGTGGTAAACATCGACACTTCAGGACTCACT
GCACTGGAAGAAATACACAAGGAGTTGGTGTCTCTTGGCTTACAGATGGCTATAGCCAGT
CCGGGATGGAAGGCAGTTCAGAAGATGAAAGTGTCACAGGTGGTGGACAGGGTAGGACAG
GACTGGATCTTCATGACAGTAGGTGAAGCGGTGGAGGCCTGTCTAGCTGCTCATAAGGGC
ACAGCTCTCGCATGTTGA

Peptide Sequence

PEP ID

Zm00001d028164_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:1:24946609:24951403:1 gene:Zm00001d028164 transcript:Zm00001d028164_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sulfate transporter 2.2
Sequence

MPTVPQDSPSSRQNQETLLKPRELQLPSFPKHFIQAPAMEASAAVESSAAVSVFEVVSSK
QRRPPDTAKLVLNSPSPPSLREELVGVVGKAFRPRAHAGAAAGAGGRPPPRRAWVLTALQ
CVFPVLQWGRSYTLESFRSDVMAGLTLASLGIPQSIGYANLAKLDPQYGLYTSVVPPLIY
AVMGTSREIAIGPVAVVSLLLSSMIQKVVDPAADPATYRSLVFTVTFLAGVFQVSFGLFR
LGFLVDFLSHAAIVGFMGGAAIVIGMQQLKGLLGLAHFTNSTDVVSVLKAVCSALRHDPW
HPGNFLIGCSFLIFILTTRFIGRRYKKLFWLSAISPLLSVILSTAAVYATRADRHGVKII
QKVHAGLNPSSVKQIHLNGPHTTECAKIAVICAVIALTEAIAVGRSFASVRGYRLDGNKE
MLAMGFSNVAGSLSSCYVATGSFSRTAVNFSAGARSTVSNIVMSITVFVTLELFMKLLYY
TPMAVLASIILSALPGLIDIKEACSIWKIDKMDFLTCLGAFVGVLFGSVEIGLAVALGIS
FAKIIIQSLRPQVEILGRLQGTDIFCSVRQYPVACLTPTVLPIRVDTSFLCFINATSVKE
RITEWVWEGVETSNGKARERIQAVVLDMSSVVNIDTSGLTALEEIHKELVSLGLQMAIAS
PGWKAVQKMKVSQVVDRVGQDWIFMTVGEAVEACLAAHKGTALAC

Transcript Sequence

Transcript ID

Zm00001d028164_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:24946609:24951403:1 gene:Zm00001d028164 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sulfate transporter 2.2
Sequence

CATCACATTCAATTAATCATCGCAGGCGGCAGGCGAAGAAAAAGTGCAAAAGGCACTCCG
CGAAACGCCTCCCACTCCGGTGAGCAACAGATGACTGATGATGCATGTGGCCTTCTTTGT
GGCATGGTCCATAGCAATCCACTACCAGTCTACCACACCCGGCCAGGCAGCCCATATATA
GCAGCATGTCAAATTTGCTCCGGCGTCCACACCACGCCCCTGCAAGTGATCGAGCATTTC
CTCCCCCGGCCGGGACGGGGCTCATCCACGCTCGGGGACGGGATGGATGTCTTCTTCCTC
TAACCGTACCCACGGCCTCTTGCCAGAGAATCATCCCATATCTTCGTCCCGTCCGTCCAT
ATGCATGATCCATCGTCTCCTAGGCTAGGGCCGGTGATGTTTACACGAGAGGAGGGGGAG
AGGAATTCTAGCCAGCTGCGCATGTGATCGTTGTCATGCCAACCGTACCGCAAGATTCTC
CGTCCAGCCGCCAGAACCAAGAAACCCTTTTAAAGCCAAGGGAGCTCCAGCTCCCGAGTT
TCCCCAAACACTTCATCCAGGCTCCAGCCATGGAGGCCTCGGCAGCGGTCGAGTCGTCGG
CCGCCGTGTCTGTCTTCGAGGTAGTATCCAGCAAGCAGCGGCGGCCGCCGGACACGGCGA
AGCTGGTGCTGAATAGCCCCAGCCCGCCGAGCCTGCGGGAGGAGCTCGTCGGCGTGGTCG
GCAAGGCGTTCCGGCCGCGCGCCCACGCCGGGGCCGCTGCTGGCGCCGGTGGCCGCCCGC
CGCCGCGCCGCGCGTGGGTCCTCACGGCGCTGCAGTGCGTGTTCCCGGTGCTGCAGTGGG
GGAGGAGCTACACCCTCGAGTCCTTCAGGAGTGACGTCATGGCCGGCCTCACTCTTGCCA
GCCTTGGCATCCCTCAGAGCATTGGATACGCCAATCTAGCCAAGCTGGACCCTCAGTACG
GTCTTTACACGAGCGTCGTGCCACCGCTGATCTACGCTGTGATGGGGACATCGAGGGAGA
TCGCCATCGGGCCAGTCGCCGTCGTCTCGCTGCTGCTGTCCTCGATGATCCAGAAGGTCG
TCGACCCGGCCGCCGACCCGGCGACCTACAGGTCGCTCGTCTTCACGGTGACTTTCCTCG
CCGGGGTCTTCCAGGTCTCCTTCGGCCTCTTCAGGCTGGGGTTTCTCGTGGATTTCCTGT
CGCACGCTGCCATCGTGGGGTTCATGGGCGGGGCGGCCATCGTGATCGGGATGCAGCAGC
TCAAGGGGCTGCTTGGCCTCGCCCATTTCACCAACAGCACCGATGTTGTTTCTGTCCTCA
AGGCTGTCTGCTCTGCGCTACGACATGACCCGTGGCACCCGGGCAACTTCCTCATCGGAT
GCTCCTTCCTCATATTCATCCTCACCACACGGTTCATCGGGAGGAGGTACAAGAAGCTGT
TCTGGCTGTCAGCGATCTCGCCTCTGCTGTCGGTCATCCTGTCCACCGCTGCGGTCTACG
CGACAAGGGCTGACAGGCACGGCGTCAAGATCATCCAGAAGGTGCACGCGGGCCTAAACC
CAAGCTCCGTGAAGCAGATACACCTCAACGGGCCGCACACAACGGAGTGCGCCAAGATCG
CCGTCATCTGCGCAGTCATCGCCCTCACGGAAGCTATCGCCGTTGGCCGATCTTTCGCCT
CCGTAAGAGGGTACAGACTCGACGGCAACAAGGAGATGCTGGCCATGGGGTTCTCCAACG
TTGCTGGTTCTCTGTCCTCGTGCTATGTGGCAACAGGTTCGTTCTCCCGAACGGCAGTGA
ACTTCAGCGCGGGGGCCAGGTCGACCGTTTCAAACATCGTCATGTCCATCACCGTGTTCG
TCACCCTGGAGCTGTTCATGAAGCTCCTCTACTACACGCCCATGGCGGTGCTCGCCTCCA
TCATCCTGTCGGCTCTTCCGGGACTGATCGACATCAAGGAGGCCTGCAGCATATGGAAGA
TCGACAAGATGGATTTCCTCACCTGCCTCGGTGCGTTTGTTGGCGTCCTGTTTGGGTCGG
TGGAGATTGGGCTTGCAGTTGCACTTGGCATTTCCTTCGCAAAGATCATCATACAGTCGC
TTCGGCCTCAGGTGGAGATCCTTGGCAGGCTACAAGGGACAGATATCTTCTGCAGCGTCA
GGCAGTACCCTGTAGCCTGCCTAACTCCGACTGTACTGCCTATACGCGTCGACACATCCT
TCCTCTGCTTCATCAACGCCACTTCCGTCAAAGAAAGGATCACAGAGTGGGTTTGGGAAG
GAGTGGAGACCTCAAATGGAAAAGCGAGGGAGAGGATACAAGCAGTTGTCCTTGATATGT
CAAGTGTGGTAAACATCGACACTTCAGGACTCACTGCACTGGAAGAAATACACAAGGAGT
TGGTGTCTCTTGGCTTACAGATGGCTATAGCCAGTCCGGGATGGAAGGCAGTTCAGAAGA
TGAAAGTGTCACAGGTGGTGGACAGGGTAGGACAGGACTGGATCTTCATGACAGTAGGTG
AAGCGGTGGAGGCCTGTCTAGCTGCTCATAAGGGCACAGCTCTCGCATGTTGAGTATGCG
TTAATTACTACTATTAGTACTCCTAAGGATAATCCCATAAGCGATGCGGTTATTTGCATC
CTATGAAGGTGTTACTGGAAATGCTTACGAAACAGAAATGCATGGTTTGCACATGATGGA
GGCAAAATACCTATGGTATGACTTGACTGGAGTGGTCGTGGCGAGAAACAAACCTGCTCT
GGGAAGGACATTCCTTGAGCTCCACAAAAACATGTATGGTGATATCTTGATGATGTGTAA
CTGTACTTAGTAAGTAAACAAGTCTTTTTGTTTTACTGTTTCTTACAAGAAAAAGATGAA
ACCTTGACTTAAAAAGAACTAAATGATACTCCTTCCGTC