Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028111_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:1:23118740:23122921:-1 gene:Zm00001d028111 gene_biotype:protein_coding transcript_biotype:protein_coding description:Arabinanase/levansucrase/invertase
Sequence

ATGGGTATGCGGAGCAGGCACCCAAAGGCGTTGGGTTTCCGCTGGTACCCGGCGGCAACC
CACCGGTCCCTAACTCTGGTACTGTGGAGCCTAGCGGCATTGGTCGTCGTTGTGAATTTC
CATCTTCTCATCATTCATAAGGAGGAGGGTGAGAATATGAGTACACACGAGATCCGCCGA
TCGATTATGAGGGAACTGGAAGTGGTGGAGGAGGAGAAGTTCCGGCTAGCTCCTCCCCGG
AGCCGGAGGAATCCCCGGGCTGTGCGCCGCAAGGGAGAGAAGAAGTCGCCTACAATAGTG
GATGAGTTCTTGGATGAGTCTTCTGCAGTGCATGATATGTTCTTCCCAGAACTGAACACG
GCTGTGGATCCAATCAATGGTGGAAATGACAGCATGTACTTCTACTACCCAGGAAGAATT
TGGTTGGACACTGATGGAAAACCAATTCAAGCTCATGGAGGAGGTGTCCTGTATGATAAG
AGGACCAACACCTATTTCTGGTACGGGGAGAACAAGGATGGCAAAACCTACAAAGCTCAC
AGCAAGGGAGCAGACAGGGTTGACATCATTGGAGTAAGTTGCTATTCTTCGAAGGACCTG
TGGGCATGGAAAAATGAAGGGCTTGTCCTCCGTGGTGAGAAGAATGGAACACATGATCTT
CACAAATCCAATGTCCTAGAGAGGCCCAAGGTGATATACAATGATCGGACTGGCAAATAT
GTGATGTGGATGCACATAGATGATGCGAACTACACCAAAGCTTCAGTTGGTGTGGCCGTC
AGTGACTCTCCGACAGGCCCATTCACTTATCTCTACAGCAAGCGTCCACATGACTGTGAG
AGTAGAGACATGACCATCTTCAAGGATGATGATGGGAAGGCCTACCTGATATACTCTTCT
GAGGACAACAGCGAGCTCCACATTGGTCCGCTAACTGACGACTACCTTGATGTCACTGAT
GTGATGCGAAGGCTTCTCATCGCACAGCATCGAGAAGCTCCTGCGCTCTTCAAGCATGAA
GGCACCTACTATATGGTAACGTCTGGCTGCACAGGCTGGGCTCCAAACACTGCGCTGGCT
CACGCAGCAACATCAGTGATGGGACCTTGGGAGACGCTGGGGAATCCTTGTGTGGGAGGG
AACGAGGTCTTCAGATCAACAACGTTCTTCTCCCAGAGCACATTTGTCTTGCCGGTTCCA
GGGCTGCCGGGCTCATTCATCTTCATGGCTGATCGGTGGAACCCATCCGATCTTAGAGAT
TCGCGGTATGTCTGGCTGCCTCTGACGATAGGGGGAGTCCCTGATGAAGCCGCAGACTAT
AGCTTCATGTTCCCTCTCTGGTCCCGGGTGTCCATCTACTGGCACAAACGGTGGCGTCTC
CCTGAGGAGTGGAGGGATTCTTGA

Peptide Sequence

PEP ID

Zm00001d028111_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:1:23118740:23122921:-1 gene:Zm00001d028111 transcript:Zm00001d028111_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Arabinanase/levansucrase/invertase
Sequence

MGMRSRHPKALGFRWYPAATHRSLTLVLWSLAALVVVVNFHLLIIHKEEGENMSTHEIRR
SIMRELEVVEEEKFRLAPPRSRRNPRAVRRKGEKKSPTIVDEFLDESSAVHDMFFPELNT
AVDPINGGNDSMYFYYPGRIWLDTDGKPIQAHGGGVLYDKRTNTYFWYGENKDGKTYKAH
SKGADRVDIIGVSCYSSKDLWAWKNEGLVLRGEKNGTHDLHKSNVLERPKVIYNDRTGKY
VMWMHIDDANYTKASVGVAVSDSPTGPFTYLYSKRPHDCESRDMTIFKDDDGKAYLIYSS
EDNSELHIGPLTDDYLDVTDVMRRLLIAQHREAPALFKHEGTYYMVTSGCTGWAPNTALA
HAATSVMGPWETLGNPCVGGNEVFRSTTFFSQSTFVLPVPGLPGSFIFMADRWNPSDLRD
SRYVWLPLTIGGVPDEAADYSFMFPLWSRVSIYWHKRWRLPEEWRDS

Transcript Sequence

Transcript ID

Zm00001d028111_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:23118740:23122921:-1 gene:Zm00001d028111 gene_biotype:protein_coding transcript_biotype:protein_coding description:Arabinanase/levansucrase/invertase
Sequence

ACTCTCACGCCGTACCCACCACAATGTGACGGGCGACCTTTCCAGAGCAACGCCGCAGTT
CGCGAACTGTTCGCAAGGAAGGCAGCCACCCAGCCATACCAATTACCAAACCACTCATCA
GGTCGCGTTGCCAGCCGCTCAAGCCAAGACAGCCCCACTAATCTCCCTGGGATCGCGGCT
CGGGCTAAGCTAATCGGGGCGCCCCAACCATCTCTCGCCAAGATCTCGACAAGGACTAGC
CCATGCGCGTGTCAACTGGAGTAGTTAAGCGGCGCCATGGGTATGCGGAGCAGGCACCCA
AAGGCGTTGGGTTTCCGCTGGTACCCGGCGGCAACCCACCGGTCCCTAACTCTGGTACTG
TGGAGCCTAGCGGCATTGGTCGTCGTTGTGAATTTCCATCTTCTCATCATTCATAAGGAG
GAGGGTGAGAATATGAGTACACACGAGATCCGCCGATCGATTATGAGGGAACTGGAAGTG
GTGGAGGAGGAGAAGTTCCGGCTAGCTCCTCCCCGGAGCCGGAGGAATCCCCGGGCTGTG
CGCCGCAAGGGAGAGAAGAAGTCGCCTACAATAGTGGATGAGTTCTTGGATGAGTCTTCT
GCAGTGCATGATATGTTCTTCCCAGAACTGAACACGGCTGTGGATCCAATCAATGGTGGA
AATGACAGCATGTACTTCTACTACCCAGGAAGAATTTGGTTGGACACTGATGGAAAACCA
ATTCAAGCTCATGGAGGAGGTGTCCTGTATGATAAGAGGACCAACACCTATTTCTGGTAC
GGGGAGAACAAGGATGGCAAAACCTACAAAGCTCACAGCAAGGGAGCAGACAGGGTTGAC
ATCATTGGAGTAAGTTGCTATTCTTCGAAGGACCTGTGGGCATGGAAAAATGAAGGGCTT
GTCCTCCGTGGTGAGAAGAATGGAACACATGATCTTCACAAATCCAATGTCCTAGAGAGG
CCCAAGGTGATATACAATGATCGGACTGGCAAATATGTGATGTGGATGCACATAGATGAT
GCGAACTACACCAAAGCTTCAGTTGGTGTGGCCGTCAGTGACTCTCCGACAGGCCCATTC
ACTTATCTCTACAGCAAGCGTCCACATGACTGTGAGAGTAGAGACATGACCATCTTCAAG
GATGATGATGGGAAGGCCTACCTGATATACTCTTCTGAGGACAACAGCGAGCTCCACATT
GGTCCGCTAACTGACGACTACCTTGATGTCACTGATGTGATGCGAAGGCTTCTCATCGCA
CAGCATCGAGAAGCTCCTGCGCTCTTCAAGCATGAAGGCACCTACTATATGGTAACGTCT
GGCTGCACAGGCTGGGCTCCAAACACTGCGCTGGCTCACGCAGCAACATCAGTGATGGGA
CCTTGGGAGACGCTGGGGAATCCTTGTGTGGGAGGGAACGAGGTCTTCAGATCAACAACG
TTCTTCTCCCAGAGCACATTTGTCTTGCCGGTTCCAGGGCTGCCGGGCTCATTCATCTTC
ATGGCTGATCGGTGGAACCCATCCGATCTTAGAGATTCGCGGTATGTCTGGCTGCCTCTG
ACGATAGGGGGAGTCCCTGATGAAGCCGCAGACTATAGCTTCATGTTCCCTCTCTGGTCC
CGGGTGTCCATCTACTGGCACAAACGGTGGCGTCTCCCTGAGGAGTGGAGGGATTCTTGA
AAAATCTGAAGTTCTTTTAGAATAATTCAAGATGTGGTACATTGATAGATACCAAAGTAT
CGACATACGACACGTCGGTCTACACTGTATAGGTCAGATGTAGATGCAGGGTTTGTAAAT
GTGCAGTTTTTGGAGTTTGCACTGAAATCAGATAAAACTTTGTGGCCTTTTGGGCGAGGT
GTTGTGGCGATCCACTCGTCTTACTTTCAAGAATAATCTGCTTGCCCATTCAGCATTGGT
CTTACCGTTTGATCTAGTTGGAAATGTGTGCTGACGGCTATGT