Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028084_T016
CDS Infomation

cds chromosome:B73_RefGen_v4:1:22268196:22274270:-1 gene:Zm00001d028084 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA repair protein UVH3
Sequence

ATGGGAGTTCACGGTCTGTGGGAACTACTGGCTCCGGTTGGGCGACGCGTCTCAGTGGAG
ACCCTTGCGGGCAAGCGGGTGGCGGTGGACGCGAGCATCTGGATGGTGCAGTTCATGCGG
GCGATGCGGGACGACAGCGGCGAGATGGTCCGGGACGCGCACCTCCTAGGGTTCCTCCGT
CGCATCTGCAAGCTCCTCTTCCTCCGTGTTCGCCCCGTATTCGTCTTCGATGGCGCCACG
CCGGCGCTCAAGCGCCGCACCCTCGCTGCCCGCCGCAGGCACCGTGACGCCGCGCAGGCC
AAGGTCCGAAAGACCGCCGAGAAACTCCTGCTCTCCCATCTCAAAGCTAGAAAGCTTGAA
GAATTGGCAGAACAAATCAGGAGTGACAGAGCTAAGCATGATGCCAAGGGCAAGCAAGTT
GAGAGCAGTAATGGAGGAGAAACTGAGAAAACAAGTCAAAACCAAATCGGTGATACCAAC
AACAGTGAGGGAAATGTTGCATCGATCAATCAGGAGAAAGTGGATGGAATGCTGGCCGCA
TCGCTTGCTGCAGAGGAAGACACAGATTTCACTGACGAGGGAACACACCATCTTACAAGT
GCTCCATTGCCAGAAGGAGATGAAATTGATGAGGATGAAGATGATGATGAAGGGATGATC
TTCCCTATGACAACTGGTGACATTGATCCTGCAGTATTGGCTTCCCTTCCTCCATCGATG
CAGTTAGATCTTCTTGTTCAGATGAGGGAGAGAGTGATGGCTGAAAACAGGCAGAAGTAC
CAGAAAATAAAAAAGGAACCTGCAAAGTTTTCAGAGCTTCAAATACAGTCCTATCTCAAA
ACAGTTGCTTTCCGTCGAGAGATAGACCAAGTTCAGAAGTCTTCGTCAGGGAAGGGTAGT
GGAGGTGTCCAGACATCAAAAATAGCATCAGAAGCTAATAGAGAGTTTATTTTCTCATCA
TCATTCACTGGTGATAAACAGATGCTGGCACAAAGAGGTGAAAAGGAGCATAATGTTGAA
AACACTAGATCAAAAAAGGAAATTCATTCTTCTGTCTTCGCATCTAACCCCACAAGTAGT
TTGGGAACAATGAAGCCTCCCAACAGCAAAACTTTGAGCGATTTTGGGCCTGATGTTGAG
ACCTATCGTGATGAGAGAGGACGGATTAGAGTAAGCAGGGTCAGAGCAATGGGAATTCGT
ATGACTCGTGACATTCAAAGGAATTTAGATTTTATTAAAGAGAATGAACAGGTTAAAAGT
AAGGGACAGACACAGACCAATTTTCACAATGGATCAACAGGCAATGAAGAGCCTCCAGAT
TTTCCAGAACATCTTTTTGAAAGTAACAAGCTCCAGAGTTCTTGTAGTCCTGATGTGGAT
CTTTCTGAAACTGACAGAGACAACCATCAGACCTCGTCACAAATAGGAACAGATATCATT
TCTGAGAGTTCTTGTTATGGAAACAAGGAAGCAATAGAGATATCTTTCTCGGTTGATCAA
ACTGAAGTGAAGGATGGCGATGAAGATATATTTTTGCAATTAGTGTCCGGGATGGCACCC
AACAACATATTTTCTGGAAATAATTGTTTGGTTAAAAAGATGGAAGAATCTGTAGATTCT
GAGTGTATTTGGGAAGATGGTGTTATTGAAGCAGGAACTTCTCCTGTGAAAATTGACATG
AAGGATCATAAGTCATCTCTGCCAGAGAATTGCAGCGATGATGAGATGGAGTGGGAGGAA
GGTGATAGCTTTGTACCTGGAGTTGCTTCTAGTAGTGAACATAATCCATGTAATGCACCA
AAGGGGGATCTGGAAGAAGCAGCTCTTGTACAGGAAGCAATAAGGAGGAGTTTAGAGGAT
TTTGAGAAGAAGGCATCTGAGAATGTGAGTACTGGAGATATACAAGCATCTGTTGAAGAT
AGATCTTTGCAGTTCTCCAACAATGTTCCTAAGATATCTGAATCTCTTGGTGAAAATGAT
TCACATTCTGGAGTACCTGTTGTTGACGAGATAAACAATGAAACAAGAACAGAAATCAAT
TATGATAAGGATGATATGGTACAAGGCACTGGACTACTTGGAACTGAGAGACAAGAATCT
GAATCACAACCCCCACTGGTGAATAATGATTGGCATGCCGATATGCACAGAGCTCATCCT
CTGGGGTCTGTGCCTCCATGTACTACATTCACGAGTGATCTGGCTGAAAAACCATCTGTC
AGTGCAGAAACTAACGGTGAAGATGTAATGATATTTACAACAAAAATTCCTGGAACAGCT
TTAGGCGATTGTGATAAAACTTCCAACCTAAACATTATGAATTCTGATCAATCAAAATGC
AGCAAAGATATTGCTTCAACTGGAGAATCCTTGTCACACCAAAAGAACCTTTTAATTGAT
GAACTACTAGCCGTCACTGCC

Peptide Sequence

PEP ID

Zm00001d028084_P016
PEP Infomation

pep chromosome:B73_RefGen_v4:1:22268196:22274270:-1 gene:Zm00001d028084 transcript:Zm00001d028084_T016 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA repair protein UVH3
Sequence

MGVHGLWELLAPVGRRVSVETLAGKRVAVDASIWMVQFMRAMRDDSGEMVRDAHLLGFLR
RICKLLFLRVRPVFVFDGATPALKRRTLAARRRHRDAAQAKVRKTAEKLLLSHLKARKLE
ELAEQIRSDRAKHDAKGKQVESSNGGETEKTSQNQIGDTNNSEGNVASINQEKVDGMLAA
SLAAEEDTDFTDEGTHHLTSAPLPEGDEIDEDEDDDEGMIFPMTTGDIDPAVLASLPPSM
QLDLLVQMRERVMAENRQKYQKIKKEPAKFSELQIQSYLKTVAFRREIDQVQKSSSGKGS
GGVQTSKIASEANREFIFSSSFTGDKQMLAQRGEKEHNVENTRSKKEIHSSVFASNPTSS
LGTMKPPNSKTLSDFGPDVETYRDERGRIRVSRVRAMGIRMTRDIQRNLDFIKENEQVKS
KGQTQTNFHNGSTGNEEPPDFPEHLFESNKLQSSCSPDVDLSETDRDNHQTSSQIGTDII
SESSCYGNKEAIEISFSVDQTEVKDGDEDIFLQLVSGMAPNNIFSGNNCLVKKMEESVDS
ECIWEDGVIEAGTSPVKIDMKDHKSSLPENCSDDEMEWEEGDSFVPGVASSSEHNPCNAP
KGDLEEAALVQEAIRRSLEDFEKKASENVSTGDIQASVEDRSLQFSNNVPKISESLGEND
SHSGVPVVDEINNETRTEINYDKDDMVQGTGLLGTERQESESQPPLVNNDWHADMHRAHP
LGSVPPCTTFTSDLAEKPSVSAETNGEDVMIFTTKIPGTALGDCDKTSNLNIMNSDQSKC
SKDIASTGESLSHQKNLLIDELLAVTA

Transcript Sequence

Transcript ID

Zm00001d028084_T016
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:22268196:22274270:-1 gene:Zm00001d028084 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA repair protein UVH3
Sequence

AAGCGCGTCCACATAACCAAACACGCAGAAAGAGATTTTGAGTCTAAATCGTAGATCGTC
GAATCCCTCCTCAACGCATTCGTTTCGACGAATCATAATGTGTGTTTTATAATGACAAAA
ATCTCGCGAGTCGTAGGCTCGTGGTCGTGGGTCGTGGCCCTAGCGACAGGCACAACAGGC
CCCTCCGCTCCTGGCCTCCTCCTCGGCGTCGCGTCAACGTTGCGCCTCTCCAGAGTCGCC
GGCCGCCGAGGGCACTCTCCACCTCTTCCGTCGGCGCCCGGGAGAAGGAGATGGGAGTTC
ACGGTCTGTGGGAACTACTGGCTCCGGTTGGGCGACGCGTCTCAGTGGAGACCCTTGCGG
GCAAGCGGGTGGCGGTGGACGCGAGCATCTGGATGGTGCAGTTCATGCGGGCGATGCGGG
ACGACAGCGGCGAGATGGTCCGGGACGCGCACCTCCTAGGGTTCCTCCGTCGCATCTGCA
AGCTCCTCTTCCTCCGTGTTCGCCCCGTATTCGTCTTCGATGGCGCCACGCCGGCGCTCA
AGCGCCGCACCCTCGCTGCCCGCCGCAGGCACCGTGACGCCGCGCAGGCCAAGGTCCGAA
AGACCGCCGAGAAACTCCTGCTCTCCCATCTCAAAGCTAGAAAGCTTGAAGAATTGGCAG
AACAAATCAGGAGTGACAGAGCTAAGCATGATGCCAAGGGCAAGCAAGTTGAGAGCAGTA
ATGGAGGAGAAACTGAGAAAACAAGTCAAAACCAAATCGGTGATACCAACAACAGTGAGG
GAAATGTTGCATCGATCAATCAGGAGAAAGTGGATGGAATGCTGGCCGCATCGCTTGCTG
CAGAGGAAGACACAGATTTCACTGACGAGGGAACACACCATCTTACAAGTGCTCCATTGC
CAGAAGGAGATGAAATTGATGAGGATGAAGATGATGATGAAGGGATGATCTTCCCTATGA
CAACTGGTGACATTGATCCTGCAGTATTGGCTTCCCTTCCTCCATCGATGCAGTTAGATC
TTCTTGTTCAGATGAGGGAGAGAGTGATGGCTGAAAACAGGCAGAAGTACCAGAAAATAA
AAAAGGAACCTGCAAAGTTTTCAGAGCTTCAAATACAGTCCTATCTCAAAACAGTTGCTT
TCCGTCGAGAGATAGACCAAGTTCAGAAGTCTTCGTCAGGGAAGGGTAGTGGAGGTGTCC
AGACATCAAAAATAGCATCAGAAGCTAATAGAGAGTTTATTTTCTCATCATCATTCACTG
GTGATAAACAGATGCTGGCACAAAGAGGTGAAAAGGAGCATAATGTTGAAAACACTAGAT
CAAAAAAGGAAATTCATTCTTCTGTCTTCGCATCTAACCCCACAAGTAGTTTGGGAACAA
TGAAGCCTCCCAACAGCAAAACTTTGAGCGATTTTGGGCCTGATGTTGAGACCTATCGTG
ATGAGAGAGGACGGATTAGAGTAAGCAGGGTCAGAGCAATGGGAATTCGTATGACTCGTG
ACATTCAAAGGAATTTAGATTTTATTAAAGAGAATGAACAGGTTAAAAGTAAGGGACAGA
CACAGACCAATTTTCACAATGGATCAACAGGCAATGAAGAGCCTCCAGATTTTCCAGAAC
ATCTTTTTGAAAGTAACAAGCTCCAGAGTTCTTGTAGTCCTGATGTGGATCTTTCTGAAA
CTGACAGAGACAACCATCAGACCTCGTCACAAATAGGAACAGATATCATTTCTGAGAGTT
CTTGTTATGGAAACAAGGAAGCAATAGAGATATCTTTCTCGGTTGATCAAACTGAAGTGA
AGGATGGCGATGAAGATATATTTTTGCAATTAGTGTCCGGGATGGCACCCAACAACATAT
TTTCTGGAAATAATTGTTTGGTTAAAAAGATGGAAGAATCTGTAGATTCTGAGTGTATTT
GGGAAGATGGTGTTATTGAAGCAGGAACTTCTCCTGTGAAAATTGACATGAAGGATCATA
AGTCATCTCTGCCAGAGAATTGCAGCGATGATGAGATGGAGTGGGAGGAAGGTGATAGCT
TTGTACCTGGAGTTGCTTCTAGTAGTGAACATAATCCATGTAATGCACCAAAGGGGGATC
TGGAAGAAGCAGCTCTTGTACAGGAAGCAATAAGGAGGAGTTTAGAGGATTTTGAGAAGA
AGGCATCTGAGAATGTGAGTACTGGAGATATACAAGCATCTGTTGAAGATAGATCTTTGC
AGTTCTCCAACAATGTTCCTAAGATATCTGAATCTCTTGGTGAAAATGATTCACATTCTG
GAGTACCTGTTGTTGACGAGATAAACAATGAAACAAGAACAGAAATCAATTATGATAAGG
ATGATATGGTACAAGGCACTGGACTACTTGGAACTGAGAGACAAGAATCTGAATCACAAC
CCCCACTGGTGAATAATGATTGGCATGCCGATATGCACAGAGCTCATCCTCTGGGGTCTG
TGCCTCCATGTACTACATTCACGAGTGATCTGGCTGAAAAACCATCTGTCAGTGCAGAAA
CTAACGGTGAAGATGTAATGATATTTACAACAAAAATTCCTGGAACAGCTTTAGGCGATT
GTGATAAAACTTCCAACCTAAACATTATGAATTCTGATCAATCAAAATGCAGCAAAGATA
TTGCTTCAACTGGAGAATCCTTGTCACACCAAAAGAACCTTTTAATTGATGAACTACTAG
CCGTCACTGCC