Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028050_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:21680697:21686575:1 gene:Zm00001d028050 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retinoblastoma-binding protein-like

Sequence

ATGAACGTCCCTGTAGTCGATCCATATCAGGGGGAATTTCCTGAGACAATCGAAGAGTAC
TTGCATCACGGTACTATGAAATGTATCGCGTTTAACCGCAAAGGAACACTTCTTGCTGCT
GGATGCTCAAATGGTAGCTGTATTATATGGGACTTTGAAACAAGGGGGCTTGCAAAAGAA
TTTCGTGATAAAGATAGCACCGCACCTATAACAAGTGTGTCCTGGTCCAGGTATGGCCAC
CGTTTGCTTGCCTCTGCTACTGACAAGTCATTGACACTTTGGGATGTGCCAACTGGGGAA
AAAATTGCACGTATTACTCTTCAGCAGACTCCATTACGTGCCAGCCTTCAACCTGGTTCT
CCAACTCCATCTATTTGTTTGGCATGCCCTCTATCTTCTGCACCTCTTCTTGTTGATTTG
AATACTGGAAGTACTACAGTTCTCCCTGTTTCTGTATCTGAGAATGGTAACCCCCCTGCA
CCTAACCCCCGCAATAAATTTGCGGATGGTACCCCACCTTTCACGCCAACAGCTGCAACA
TTTGATAAGCATGGGGCCCTGATATATGTGGGCAACTCCAAGGGAGAAATTTTAATCATA
GATTCAAAAAGCATCCAGGTACATGCAATAGTTCCCATCCCTGGTGGAAGTGTTGTTAAG
GATATTGTTTTAAGCCGGGATGGTCAATATCTGCTGACAAATTCTAATGATCGGGTCATT
AGAGTCTACCGAAACATTCTACCTGTTAAAGGTTCTAGAGAGGAGATCAGAAACATAAGC
AGCAACAGTAATGAATATGGAAGTCACTACGATAAATTAAAAGCAAATGGTACAAGCTGC
CTTATTCTTTCCTGTGAACTTTTGGATGCCATCACAAAGATACAGTGGAAGGCACCATGT
TTCAGTGGTAATGGTGAGTGGATAGTTGGTGCTTCTGCAAACAAAGGAGAGCACAGGTTG
CAGATATGGAACCAAGCAGGGCGCCTTGTAAAGATGCTTGAAGGTCCAAAAGAAGCTCTC
ATTGATCTTGCCTGGCATCCTGTTGAGCCTACAATTGCTACAGTATCTGTGACAGGCTTC
GTATACATTTGGGCCAAGGAGCATGTAGAGAATTGGAGCGCTTTTGCTCCTGATTTCGTA
GAGTTAGAAGAAAATGAAGAGTACGCCGAACGAGAGGATGAGTTTGACTTGAATCCACGT
GAAGAACAGGCTGAGAAAGTAGTGATAGATGAGGATGCTGATGTTGATATCGAGACATCT
GAGAAGAATACAGTGTTCAGTGATGTGGAGGATTCTGTGGATGAGATCTCCTACTTACCA
GCAATTCCTTACCCAGATTCTCCTGATGAGCAGCCAGAGAAATGCCTTGGAAGTTCAAAG
TTGGAGGATAGCAACCATTCTGGTTCCCCATCCTCAATGGATGCTGTACAGAATGGACAA
GCCATTCCTCCAGCATCAAGCCCAATGGAAGTTGACAACTCTACTGCTGAAGACCCAGAA
GAAGGGCCAAACTCAAAGCGGAAGCGGCGGCTGTCAGTGAAGGGGCTTGAGTTGCAGCAG
TCCGAGAAAGGCAAAAAGGGATCAACAAAGAACAAGTCCCTCGGGAAGTCCACAAAATCC
AGCGCCAAGAAGATGGAATCTGCCAATGGTAACAGCTCTGCCTTCGATGATGAAGCCACT
GAGGATGATGAGATTAACATTGATAGCTAG

Peptide Sequence

PEP ID

Zm00001d028050_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:21680697:21686575:1 gene:Zm00001d028050 transcript:Zm00001d028050_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retinoblastoma-binding protein-like

Sequence

MNVPVVDPYQGEFPETIEEYLHHGTMKCIAFNRKGTLLAAGCSNGSCIIWDFETRGLAKE
FRDKDSTAPITSVSWSRYGHRLLASATDKSLTLWDVPTGEKIARITLQQTPLRASLQPGS
PTPSICLACPLSSAPLLVDLNTGSTTVLPVSVSENGNPPAPNPRNKFADGTPPFTPTAAT
FDKHGALIYVGNSKGEILIIDSKSIQVHAIVPIPGGSVVKDIVLSRDGQYLLTNSNDRVI
RVYRNILPVKGSREEIRNISSNSNEYGSHYDKLKANGTSCLILSCELLDAITKIQWKAPC
FSGNGEWIVGASANKGEHRLQIWNQAGRLVKMLEGPKEALIDLAWHPVEPTIATVSVTGF
VYIWAKEHVENWSAFAPDFVELEENEEYAEREDEFDLNPREEQAEKVVIDEDADVDIETS
EKNTVFSDVEDSVDEISYLPAIPYPDSPDEQPEKCLGSSKLEDSNHSGSPSSMDAVQNGQ
AIPPASSPMEVDNSTAEDPEEGPNSKRKRRLSVKGLELQQSEKGKKGSTKNKSLGKSTKS
SAKKMESANGNSSAFDDEATEDDEINIDS

Transcript Sequence

Transcript ID

Zm00001d028050_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:21680697:21686575:1 gene:Zm00001d028050 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retinoblastoma-binding protein-like

Sequence

CCCCTCACCGCCGCGGCCACCTGCGTCCGCCCGTCCCGACCTCCGTCCTCCGCCTCCGGC
ACCGTCGCGGCCCCCTGAACGCAGTCCGATTCCAGCCTCCGCCAGCCCGCCCACCAGCCA
CCGGCTTCCGGCCTCCGCCCGCCGGCGGCGGCCTCTGCTCTCCGCCCACCTGGCCACCTC
CGCATCCGGCCTCAGCCTCCGGTGTCCGGTGTCCGCCCCCGCAGTGGGCGTGCCGCACTG
GGCTGAGGAAGAACAGCTTCCGGTTCCTGCTGCTGATCTTGAACGGCGCGGCGCTCAGGT
CGGAGGAGGCCTGCCGACGAGACTGAGGTAGCAGAAGGAGCCATACCAAAAAGAGAATCT
TCCTCCGCCACTGTCGACTCCCATCTGCGAGGGTAGCTTCGCGCCGAGGCGTCAGTGGCG
CGATGAACGTCCCTGTAGTCGATCCATATCAGGGGGAATTTCCTGAGACAATCGAAGAGT
ACTTGCATCACGGTACTATGAAATGTATCGCGTTTAACCGCAAAGGAACACTTCTTGCTG
CTGGATGCTCAAATGGTAGCTGTATTATATGGGACTTTGAAACAAGGGGGCTTGCAAAAG
AATTTCGTGATAAAGATAGCACCGCACCTATAACAAGTGTGTCCTGGTCCAGGTATGGCC
ACCGTTTGCTTGCCTCTGCTACTGACAAGTCATTGACACTTTGGGATGTGCCAACTGGGG
AAAAAATTGCACGTATTACTCTTCAGCAGACTCCATTACGTGCCAGCCTTCAACCTGGTT
CTCCAACTCCATCTATTTGTTTGGCATGCCCTCTATCTTCTGCACCTCTTCTTGTTGATT
TGAATACTGGAAGTACTACAGTTCTCCCTGTTTCTGTATCTGAGAATGGTAACCCCCCTG
CACCTAACCCCCGCAATAAATTTGCGGATGGTACCCCACCTTTCACGCCAACAGCTGCAA
CATTTGATAAGCATGGGGCCCTGATATATGTGGGCAACTCCAAGGGAGAAATTTTAATCA
TAGATTCAAAAAGCATCCAGGTACATGCAATAGTTCCCATCCCTGGTGGAAGTGTTGTTA
AGGATATTGTTTTAAGCCGGGATGGTCAATATCTGCTGACAAATTCTAATGATCGGGTCA
TTAGAGTCTACCGAAACATTCTACCTGTTAAAGGTTCTAGAGAGGAGATCAGAAACATAA
GCAGCAACAGTAATGAATATGGAAGTCACTACGATAAATTAAAAGCAAATGGTACAAGCT
GCCTTATTCTTTCCTGTGAACTTTTGGATGCCATCACAAAGATACAGTGGAAGGCACCAT
GTTTCAGTGGTAATGGTGAGTGGATAGTTGGTGCTTCTGCAAACAAAGGAGAGCACAGGT
TGCAGATATGGAACCAAGCAGGGCGCCTTGTAAAGATGCTTGAAGGTCCAAAAGAAGCTC
TCATTGATCTTGCCTGGCATCCTGTTGAGCCTACAATTGCTACAGTATCTGTGACAGGCT
TCGTATACATTTGGGCCAAGGAGCATGTAGAGAATTGGAGCGCTTTTGCTCCTGATTTCG
TAGAGTTAGAAGAAAATGAAGAGTACGCCGAACGAGAGGATGAGTTTGACTTGAATCCAC
GTGAAGAACAGGCTGAGAAAGTAGTGATAGATGAGGATGCTGATGTTGATATCGAGACAT
CTGAGAAGAATACAGTGTTCAGTGATGTGGAGGATTCTGTGGATGAGATCTCCTACTTAC
CAGCAATTCCTTACCCAGATTCTCCTGATGAGCAGCCAGAGAAATGCCTTGGAAGTTCAA
AGTTGGAGGATAGCAACCATTCTGGTTCCCCATCCTCAATGGATGCTGTACAGAATGGAC
AAGCCATTCCTCCAGCATCAAGCCCAATGGAAGTTGACAACTCTACTGCTGAAGACCCAG
AAGAAGGGCCAAACTCAAAGCGGAAGCGGCGGCTGTCAGTGAAGGGGCTTGAGTTGCAGC
AGTCCGAGAAAGGCAAAAAGGGATCAACAAAGAACAAGTCCCTCGGGAAGTCCACAAAAT
CCAGCGCCAAGAAGATGGAATCTGCCAATGGTAACAGCTCTGCCTTCGATGATGAAGCCA
CTGAGGATGATGAGATTAACATTGATAGCTAGTGTGTTTCTGACTGAGGGCAATAGGCGT
GGGGGATAGAAAATGCCTTTTCCCCACCACCCATCCACCACCTAATTAAAATTAACTGTT
GTATGCTGTGACAATATAAACGCATGTATCAGTGTTCTTGACTGTAAATTGATATGTGCT
GTTTCTCGTATTCCTTAGCTCTCTGCTTTGCACCCATGAGTATTTGGTTGATGCAGTAAT
TCGTTCTACTTTTGGAGATGTTCAGT