Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d028013_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:20304479:20310840:-1 gene:Zm00001d028013 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative pumilio homolog 7 chloroplastic
Sequence

ATGAGGACCGCGAAGGCGGCGGCGGAGTGGACGGAGGACAGAGAGCTGGATTTGCTTCTC
GGCGAGATCCCCCAGGTCACCTCCCCGCAGGGGCGGCAGCGCGGGGTGGGCGTCATCGGC
GACGGCAACGGCGTGCATGGCGCCTCGGGGTGCGACGGGTACGCTTCACCAATGCGCCTG
GGGGGCCGACGGGTACACTGCCCCCCGGGGGGCGACGGCTACGATGCGCAGCGCCACGCC
AAGGACGCTTACTACGACATGGTCCTGAACCGTCGCGAAAATGGTGCTCCACTCCGCGGC
GGCGGCGGCGGCGGGGATGCAGAGGGCGTGGGCTTCCCCGCGCCGTCACCGGTTCCAGGA
CCATTCATCGGTAGCGTGGTGCCGCCGCCGCTTGCGCTGGGGGTGGACTACCCGGAGCAG
CAGCTGGTCGTGAACCAGCTCCAAAGCCTGCGCATCGGGGACGCGCAGGCCGCGCTCCTG
CGCCAGGGCCCAGCGCCAGTCATGAGCACGACCCCGATCGAGGTCCCCGCAGCGCACGGC
GCCTACCACGGGTACAACTTCGCGGCGTCAGGTTCTTCCATCCGCCATGAACACGTGTTC
CTTGATCAGGCCAAAGCTGACGGGTACGTTGCAGCACGGCCGCATCGCCTCGTGTCGGAC
GTTGGCCTGGATAACTTTGGTGTTTTTCCCAGAACCCTGGACACCAGCACTGGCATTGGT
TGGGGCCAAGGTTTCGTGCAGCCTGATTTCGCCCAGTCCTACCTGCTTTCCAGTCAGGCT
GGTAATGCATATGGTGGTGTCCCTGTGGCAGACAACGGGTTTGTGAGAGGCAGAAATCAG
TTTGAGGCATTCCATCCTGACAGCAGTCCCACTGAGGCGGGTGCGGAGTTTTTCAGCTCG
AATCCCGCTGCCCTTGATTTCCGAGGTGGACCAAAGCGACACTATGCATATGGTGCTATT
CCTGTAGCAGAGGCGTACCATTGCGAGAACAGTCTAATGTTTGGTGGGAAGAACATGAAC
TTCCTGGAACGTGAGAGGAAGAGGAGTTTCCGGCGTGTTAATAACAGAGCACCGGAGCTT
GGGAATTTGAGGACTTTGAGGTTTGACGATGTGGTTCGTGTCAAGGAAGGATCCATCTAC
TACCACATGGCCAAGGATAAAAATGGGTGCCGGTATTTGCAGGACAAGTTTTTGGAAGGG
AAGCATCATGTGGATGCGATCTTTGAAGGAATCATTAACCACATTGCAGACCTTATGATC
AGCAGTGCTGGCAACTATCTTGTACAGGAGATGGTGGAAGTGTGTGATGAAGGGCAAAGA
CTGAGGATCATCTTAGCGCTGACGCAGGACCCTGTGAAGATGATTGCCATCTCTCTAAAC
ACACATGGGACAAGGGTAGTACAGAGATTAATAGAGAAAGTTACGAGCAGAGAGCTGATT
ATACTCATTATTTCAGCCCTACAGCCAGGTTTCATGCTACTTGTCAATGACCCCAATGGT
ACTCATGTAATACAGAAATGTCTGGCAAACTTTGGAGCTGAGGATAACAAGTTCATTTTT
GAGGGCGCTGCAGCCAACTATTTTAACATGGCGGTACAACGCCATGGATGCTGTGTTCTA
CAAAAGTGCATATCTACTGCACGTGGTCGATACCAGGCCAATCTAATTGTGAAAATATGT
GCTCATGGCTTTGAGCTTGCTCAAGATATATTCGGGAACTATGTGGTCCAACATGTTTTG
AAACAGAAAATTCCTTATGCAAATGCACGCTTGGCATCTCTGTTTGAAGGAAAGTATATA
TATCTCTCAAAGCAGAAGGTGAGCAGCAATGTGGTGCAGAGATGCATTGAGTTCTTCCCA
GACGATGCCAAAGCTGTCATAGTGCATGAATTCCTCTTGCTCAGAGGGTCTCATTTCGAA
CAACTGGTGACAGATCCTTACGCAAACTATGTCATTAACACCGCCCTTAACAACACCAGG
GGCCATCTGCTCAATGCCCTTGTTGAAGCGATCCGCCCTCATGAGGATGCCATCCGAACC
CACCCCTGCTGTAAGAGGATCTGCAGGTTCCTGTCCAGGTGGTGA

Peptide Sequence

PEP ID

Zm00001d028013_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:20304479:20310840:-1 gene:Zm00001d028013 transcript:Zm00001d028013_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative pumilio homolog 7 chloroplastic
Sequence

MRTAKAAAEWTEDRELDLLLGEIPQVTSPQGRQRGVGVIGDGNGVHGASGCDGYASPMRL
GGRRVHCPPGGDGYDAQRHAKDAYYDMVLNRRENGAPLRGGGGGGDAEGVGFPAPSPVPG
PFIGSVVPPPLALGVDYPEQQLVVNQLQSLRIGDAQAALLRQGPAPVMSTTPIEVPAAHG
AYHGYNFAASGSSIRHEHVFLDQAKADGYVAARPHRLVSDVGLDNFGVFPRTLDTSTGIG
WGQGFVQPDFAQSYLLSSQAGNAYGGVPVADNGFVRGRNQFEAFHPDSSPTEAGAEFFSS
NPAALDFRGGPKRHYAYGAIPVAEAYHCENSLMFGGKNMNFLERERKRSFRRVNNRAPEL
GNLRTLRFDDVVRVKEGSIYYHMAKDKNGCRYLQDKFLEGKHHVDAIFEGIINHIADLMI
SSAGNYLVQEMVEVCDEGQRLRIILALTQDPVKMIAISLNTHGTRVVQRLIEKVTSRELI
ILIISALQPGFMLLVNDPNGTHVIQKCLANFGAEDNKFIFEGAAANYFNMAVQRHGCCVL
QKCISTARGRYQANLIVKICAHGFELAQDIFGNYVVQHVLKQKIPYANARLASLFEGKYI
YLSKQKVSSNVVQRCIEFFPDDAKAVIVHEFLLLRGSHFEQLVTDPYANYVINTALNNTR
GHLLNALVEAIRPHEDAIRTHPCCKRICRFLSRW

Transcript Sequence

Transcript ID

Zm00001d028013_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:20304479:20310840:-1 gene:Zm00001d028013 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative pumilio homolog 7 chloroplastic
Sequence

CCACCTCCCCTTCCGCCTCCCTGCACTACTGCTAACCCCTGCTCCCCAATCCTGATCCAC
CCCCACACCCGATCCCCTGAATCGCCGTCCCATCACCCCGCTCCGGGTCTGCGATTCGGG
TTTTGATTTCCCATCGTTTGGGAGTTGGGACTTTGGGTTGCGTGCGTGTTCGAGTGTTCT
TGATCGCTATTGAGATGAGGACCGCGAAGGCGGCGGCGGAGTGGACGGAGGACAGAGAGC
TGGATTTGCTTCTCGGCGAGATCCCCCAGGTCACCTCCCCGCAGGGGCGGCAGCGCGGGG
TGGGCGTCATCGGCGACGGCAACGGCGTGCATGGCGCCTCGGGGTGCGACGGGTACGCTT
CACCAATGCGCCTGGGGGGCCGACGGGTACACTGCCCCCCGGGGGGCGACGGCTACGATG
CGCAGCGCCACGCCAAGGACGCTTACTACGACATGGTCCTGAACCGTCGCGAAAATGGTG
CTCCACTCCGCGGCGGCGGCGGCGGCGGGGATGCAGAGGGCGTGGGCTTCCCCGCGCCGT
CACCGGTTCCAGGACCATTCATCGGTAGCGTGGTGCCGCCGCCGCTTGCGCTGGGGGTGG
ACTACCCGGAGCAGCAGCTGGTCGTGAACCAGCTCCAAAGCCTGCGCATCGGGGACGCGC
AGGCCGCGCTCCTGCGCCAGGGCCCAGCGCCAGTCATGAGCACGACCCCGATCGAGGTCC
CCGCAGCGCACGGCGCCTACCACGGGTACAACTTCGCGGCGTCAGGTTCTTCCATCCGCC
ATGAACACGTGTTCCTTGATCAGGCCAAAGCTGACGGGTACGTTGCAGCACGGCCGCATC
GCCTCGTGTCGGACGTTGGCCTGGATAACTTTGGTGTTTTTCCCAGAACCCTGGACACCA
GCACTGGCATTGGTTGGGGCCAAGGTTTCGTGCAGCCTGATTTCGCCCAGTCCTACCTGC
TTTCCAGTCAGGCTGGTAATGCATATGGTGGTGTCCCTGTGGCAGACAACGGGTTTGTGA
GAGGCAGAAATCAGTTTGAGGCATTCCATCCTGACAGCAGTCCCACTGAGGCGGGTGCGG
AGTTTTTCAGCTCGAATCCCGCTGCCCTTGATTTCCGAGGTGGACCAAAGCGACACTATG
CATATGGTGCTATTCCTGTAGCAGAGGCGTACCATTGCGAGAACAGTCTAATGTTTGGTG
GGAAGAACATGAACTTCCTGGAACGTGAGAGGAAGAGGAGTTTCCGGCGTGTTAATAACA
GAGCACCGGAGCTTGGGAATTTGAGGACTTTGAGGTTTGACGATGTGGTTCGTGTCAAGG
AAGGATCCATCTACTACCACATGGCCAAGGATAAAAATGGGTGCCGGTATTTGCAGGACA
AGTTTTTGGAAGGGAAGCATCATGTGGATGCGATCTTTGAAGGAATCATTAACCACATTG
CAGACCTTATGATCAGCAGTGCTGGCAACTATCTTGTACAGGAGATGGTGGAAGTGTGTG
ATGAAGGGCAAAGACTGAGGATCATCTTAGCGCTGACGCAGGACCCTGTGAAGATGATTG
CCATCTCTCTAAACACACATGGGACAAGGGTAGTACAGAGATTAATAGAGAAAGTTACGA
GCAGAGAGCTGATTATACTCATTATTTCAGCCCTACAGCCAGGTTTCATGCTACTTGTCA
ATGACCCCAATGGTACTCATGTAATACAGAAATGTCTGGCAAACTTTGGAGCTGAGGATA
ACAAGTTCATTTTTGAGGGCGCTGCAGCCAACTATTTTAACATGGCGGTACAACGCCATG
GATGCTGTGTTCTACAAAAGTGCATATCTACTGCACGTGGTCGATACCAGGCCAATCTAA
TTGTGAAAATATGTGCTCATGGCTTTGAGCTTGCTCAAGATATATTCGGGAACTATGTGG
TCCAACATGTTTTGAAACAGAAAATTCCTTATGCAAATGCACGCTTGGCATCTCTGTTTG
AAGGAAAGTATATATATCTCTCAAAGCAGAAGGTGAGCAGCAATGTGGTGCAGAGATGCA
TTGAGTTCTTCCCAGACGATGCCAAAGCTGTCATAGTGCATGAATTCCTCTTGCTCAGAG
GGTCTCATTTCGAACAACTGGTGACAGATCCTTACGCAAACTATGTCATTAACACCGCCC
TTAACAACACCAGGGGCCATCTGCTCAATGCCCTTGTTGAAGCGATCCGCCCTCATGAGG
ATGCCATCCGAACCCACCCCTGCTGTAAGAGGATCTGCAGGTTCCTGTCCAGGTGGTGAA
AGTTGTACCATCTGCGTGCCTTTGGTACCAGGAGTAAGGTCGCTGGCCTGTATTCTCGAT
TGTTGTCAATTTATTATGTTCACTAGTTATCACCCATAATGTACTCCTCCACGCCGCTCT
ACATGAGCCCGGCCAGAGTTCAGAAAGGCAGGTTTTTGTTGCAAGGTGTAAAAGAAGTCT
ACCGCCCCCCGTCGTGTCTTCGGTGGTGTAGTTTTTTTGCCGCACGTTTGTCCTGATGGT
GTTGTAGAGTTGTAAAAGGAACCCGTGTGCTTTCACCCCCTTAGGTTTGTTTTGTATCTG
CTGTACTGCTTTCCACGTTGGATTCTATGAATTGTTACTGTTT