Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027946_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:18086164:18087981:-1 gene:Zm00001d027946 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxycinnamoyltransferase1 description: hydroxycinnamoyltransferase1
Sequence

ATGGAGACCATGAAGGCAACAAGAACGCTGGTGCAGCCCGTCTACTCCACCCCTCACCCG
CTCGCCGGCGAGAAGGTCCCCCTGACCGTCTTCGACCGCGCCGCCTTCGACATCTTCGTG
CCCACCGTGCTCGCCTACCCCGCGCCGGCGCCGTCCAACGAGGCGCTCAAGGATGGACTC
CGCAGGGCCGTGGCTCTGTACCCTCACCTCGCGGGCCGACTCGCCGTCGACGACCGGGGC
CGCCGGTTCCTTCACGTAAACGACGAGGGCGTGCTTGTGGTCGAAGCAGCAATCTCGGCT
GACCTGTCCGGCGTGCTCGCCGGCGGTATGACCGACGCAAACGTCGTCGTCGACGAGCTG
TACCCGAGTCTCCCAGAGGACAACGTTGGCGCGGCACTCCTGCAGATCAAGCTCAACCGC
TGCAGGTGCGGAGGCCTCGTCGTCGGCATCATCTGCCACCACCACGTCGCCGACGGCCAC
TCCATGAGCGCCTTCTTCACCACGTGGGCCAGCGCGGTGCGCGCGGGCAAGGACTTCAGC
GTTCCAGCGCCGCCCTTCCTCAAACGCGCGGCCACCGCCGTGCCCCGCGCCACGCCGACA
CCGATTTTCGACCACCGGTCCATCGAGTTCATGGGAGGCGGGGACGGCGGCCGCACCTCC
AGGATCAAGTCGTACGCCGTCGTGCCCATGGACGAGATCAAGAGCCTCACCGTGCACTTC
ACCGACGAGTTCATCGCTGGCCTCAAGGCGCGCGTCGGCGTCCGGTGCAGCACGTTCCAG
TGCCTCCTCGCGCACGTGTGGAAGAAGATCACTGCGGCGCGGGACCTCAACCTGGAGGAG
TTCACGCAGGTGAGGGTGGCGGTGAACTGCAGGGGCAGGGCTATCCCTGCCGTGCCGACG
GACTTCTTCGGCAACATGGTGCTGTGGGCGTTCCCGAGGCTCCAGGTCAAGGACCTGCTG
AACTCGAGCTACGGCAGTGTGGTAGACGCTATCCGCGACGCTGTGGCGCGCGTCGACGGC
GAGTACATCCAGTCCTTCGTCGACTTCGGGGCTTTGGCGGACAGGAGCGGTGAGGAGCTC
GTGGCTACGGCGGCGGCGGCCGGTACGATGCTGTGCCCGGACCTGGAAGTGGACAGCTGG
CTGGGGTTCCAGTTCCACCAGATGGACCTCGGCACCGGGCCGCCGTGCGCGTTCCTGCCG
CCGGACCTGCCCATCGAGGGGCTCATGGTCTTCGTGCCGTCGCGCACTGCCAAGGGTGGC
GTCGACCTGTTCATGGCCGTCGCGGAGTGCCACGTCGACGCGTTCCAGCAGATCTGCCAC
TCGATCGATTGA

Peptide Sequence

PEP ID

Zm00001d027946_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:18086164:18087981:-1 gene:Zm00001d027946 transcript:Zm00001d027946_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxycinnamoyltransferase1 description: hydroxycinnamoyltransferase1
Sequence

METMKATRTLVQPVYSTPHPLAGEKVPLTVFDRAAFDIFVPTVLAYPAPAPSNEALKDGL
RRAVALYPHLAGRLAVDDRGRRFLHVNDEGVLVVEAAISADLSGVLAGGMTDANVVVDEL
YPSLPEDNVGAALLQIKLNRCRCGGLVVGIICHHHVADGHSMSAFFTTWASAVRAGKDFS
VPAPPFLKRAATAVPRATPTPIFDHRSIEFMGGGDGGRTSRIKSYAVVPMDEIKSLTVHF
TDEFIAGLKARVGVRCSTFQCLLAHVWKKITAARDLNLEEFTQVRVAVNCRGRAIPAVPT
DFFGNMVLWAFPRLQVKDLLNSSYGSVVDAIRDAVARVDGEYIQSFVDFGALADRSGEEL
VATAAAAGTMLCPDLEVDSWLGFQFHQMDLGTGPPCAFLPPDLPIEGLMVFVPSRTAKGG
VDLFMAVAECHVDAFQQICHSID

Transcript Sequence

Transcript ID

Zm00001d027946_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:18086164:18087981:-1 gene:Zm00001d027946 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxycinnamoyltransferase1 description: hydroxycinnamoyltransferase1
Sequence

ACTCTCCGTCTCCGATCACCTGATCCAGTGGCATGCTAGCTACTCACGCACGCAACAGCT
GAACTGAGTTGCACTACTGCTTGTTGTGCCAACTACACACGAGAGCTAGACACCCACGCG
ACGATAGAATGGAGACCATGAAGGCAACAAGAACGCTGGTGCAGCCCGTCTACTCCACCC
CTCACCCGCTCGCCGGCGAGAAGGTCCCCCTGACCGTCTTCGACCGCGCCGCCTTCGACA
TCTTCGTGCCCACCGTGCTCGCCTACCCCGCGCCGGCGCCGTCCAACGAGGCGCTCAAGG
ATGGACTCCGCAGGGCCGTGGCTCTGTACCCTCACCTCGCGGGCCGACTCGCCGTCGACG
ACCGGGGCCGCCGGTTCCTTCACGTAAACGACGAGGGCGTGCTTGTGGTCGAAGCAGCAA
TCTCGGCTGACCTGTCCGGCGTGCTCGCCGGCGGTATGACCGACGCAAACGTCGTCGTCG
ACGAGCTGTACCCGAGTCTCCCAGAGGACAACGTTGGCGCGGCACTCCTGCAGATCAAGC
TCAACCGCTGCAGGTGCGGAGGCCTCGTCGTCGGCATCATCTGCCACCACCACGTCGCCG
ACGGCCACTCCATGAGCGCCTTCTTCACCACGTGGGCCAGCGCGGTGCGCGCGGGCAAGG
ACTTCAGCGTTCCAGCGCCGCCCTTCCTCAAACGCGCGGCCACCGCCGTGCCCCGCGCCA
CGCCGACACCGATTTTCGACCACCGGTCCATCGAGTTCATGGGAGGCGGGGACGGCGGCC
GCACCTCCAGGATCAAGTCGTACGCCGTCGTGCCCATGGACGAGATCAAGAGCCTCACCG
TGCACTTCACCGACGAGTTCATCGCTGGCCTCAAGGCGCGCGTCGGCGTCCGGTGCAGCA
CGTTCCAGTGCCTCCTCGCGCACGTGTGGAAGAAGATCACTGCGGCGCGGGACCTCAACC
TGGAGGAGTTCACGCAGGTGAGGGTGGCGGTGAACTGCAGGGGCAGGGCTATCCCTGCCG
TGCCGACGGACTTCTTCGGCAACATGGTGCTGTGGGCGTTCCCGAGGCTCCAGGTCAAGG
ACCTGCTGAACTCGAGCTACGGCAGTGTGGTAGACGCTATCCGCGACGCTGTGGCGCGCG
TCGACGGCGAGTACATCCAGTCCTTCGTCGACTTCGGGGCTTTGGCGGACAGGAGCGGTG
AGGAGCTCGTGGCTACGGCGGCGGCGGCCGGTACGATGCTGTGCCCGGACCTGGAAGTGG
ACAGCTGGCTGGGGTTCCAGTTCCACCAGATGGACCTCGGCACCGGGCCGCCGTGCGCGT
TCCTGCCGCCGGACCTGCCCATCGAGGGGCTCATGGTCTTCGTGCCGTCGCGCACTGCCA
AGGGTGGCGTCGACCTGTTCATGGCCGTCGCGGAGTGCCACGTCGACGCGTTCCAGCAGA
TCTGCCACTCGATCGATTGATCAAACGGCTGATGGCGCATAACATGGTTTCGGTTGCGTA
CACGGTTTGATTGTGATGATTGCAGGGCCAGACTTTAAAAAAAATTGAGAGCTGGTGCAA
AACTCAAAACTGAGCCCCATATTTGAAATATAGCAATAACCAAAATATTGTTCGATCTAA
ATCATTACTCCCTCTATTTCGAGATAAAGCGTGTAAGTATTTAAGGATCCAAACTTTGTT
ATCTTTAATAAGCAATTATTTCTCT