Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d027937_T023
CDS Infomation	cds chromosome:B73_RefGen_v4:1:17980399:17985592:1 gene:Zm00001d027937 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGAAATACAAGCTTGTTGTTCTGCACACATCTATTGTTTCTTTTGTAAAATCAATTGTG ACACAAGTCCAGGCTTTGACTGTTTTGTTGCCCATCCTGAATCTTGTCTTCACTGTTTTT TCTTCAGTTAGTATCAAATTTGTTGAGCTGTGGCTTGAGAAGATGCCAGACAAGAAGATC GAAGGGGCTGATTCATCTCACATTGTCTCTTCAACAAAATCTTTGGAAAGTTCAGTAGGG CCTAATCTAATTGAAAGTACTGATGGAGATTATTGTAATAACCTTCACAAGACAGCAGTT GCCAATTTTGTGGCATCAATGCTGCAAGAACATCCTATGAGCCTTATATTGGCTGAGAAC AAAAGCAATTTGCAAGAAATTTCAGTTGAACAGAAGATTCCTATCTTTGTTTCTATCAAC CTTTCACCAAAAGTGGATGGCAGTGAATTGCCATGCCCCATTGAAGTTCATGATGGTATT ACATCTTCCTCTAGCAAAACTAACGAACCAATGGAAGCCCAAGATTATTCGAACACAATG AAATCAAACACAGCTAGTTGCATGTTCGAGGCATCAAAGCGGCAAGAATGCCCTATAAGC CTCATATTGGCAGACAAGAAAGGCAGTTTGCAAGAAGTTTCAGTTGAACAAAATGTTCCT TGTGGTGATTATGTTGCCCTTTCACAAAAAGCAGACGGTAGTGAATTGACATCAACCCGT GAAGCTCCTGAAGGCTTTCTAACTTCCTCTAGCAAAGTTTATGTATTAAAGGAAGCCCAA GATGGTTCTATCACAACGGAAGCTTCTAAAGTAAATGTTTGTGCAGCTTCACACTCCATG CTTAGGTTAATTGAAGGAGTCCAGGATGAGGCTTCTTGTATTGATTCTGATAAGGTTACT TGTGAAACACCACCTGCCATCCTGAAAAAGTTGAAAGAAGATAAGCCACTGGTCGTCCAT AGATTTCATAAGCACCAAATGAGCCTAGGAGACACACATCAAAAGGTGCCTGCACCTGTG AGCAGATCAAACACCAGCAAATACTTAAGAATGGATAAAAACATTGTTGATACTACGACT CCCATTGAATCAGTAAAGGCTGTTGCATCAAAATTTGGTGGCAGCATGAACTGGAAAACT CGCAAGACACAGACAGCACAGGTGAGTGACCGTATCGTACTTGAGCTTGATAAGCTGAAG AACGAAATTTCAGAATGTAAACATCAAGCAGAAGCTGCAGAGGCTGCAAAGTTATCAGTA TTAAAAGAGCTGGAGAGAACAAAGAAGCTTATCGACGAAATGAAACACGTCCTGGAGAGG GAACAAGCTGAGGAGGTGGATGCCAAGGATGACTTGGAGTTATTTCAAATTATATTACAA GCGATGGAGGGAGTTGACTGTAATGATAGTGTTGTGGTTAGAGAGAAGCTGAATAATATT CAAGAACGACACAAAGCATTGGATGCCAAAGTGATTTCAGTGAAATATGTGTTGGGAAAA GTGCAGGAGGATTATGATTCTTTGTTGATCGGAACTGATATTTCCATTAACAAAGCTCAG GCAGCCTTCACAATGTCCAAAGGTGCAGAGAAAGAAGTAGAGGAGCTCACCATAGAGCTC CAAAGACTAAAGGAAGTGTTTGATTTGGCTAACGCCAAATTCCAGGACGTGGAAGAACGC AAGAACACGTTGATGGCACGTGATGAGGATCGTCTTGCATGGGAAGAGGATCTCAGGCAA TCAGACAAAGAGCTGAATCAGATCAGCATGGACCTTTGTTCTTTTCAAGAATTGCAATCA AAGCATGATACGTCAGCCACCATGTTGCTCAATCTGAAGAATGAGGTAGCCAATTATTTG GAGGCAAAGCGAATCGAGGAAGCACGAGAACAAGAAAGTGGAACTCATAAACCCGTGCAA GAAGTCATCATTATGTTAAAGAGCGAGCTCGTGGAGCAGAGGAAGAGCATAGCGAGGGTG ACGGATGAATTATGTGTTCTGAAAGCCACAGCTGAATTGCTAAAATCGCAATTGAAGAAA GAGAAAGCAGCACTTGCTGCCGCTCAGCAGATGGAAGTGATGGCATCCATGTCCACTCAG TCTCTCAAGATGGACATCAAACTGTCACAGCAGGAACTTGAAGCACTTCATGCCAAGGCA AAGGAGTGCCGAGATAGATCGGGCAAGGCTCTGCAAGATGCGTCCCATGAAGCTGACGAG GCGAAGGTTATTGCTACCAAGGCTCAGGGGGAGCTAAAAAAGACAGAGGAAGAAGTGGCG CAAGCGAAGGCTGCTCTGAGCACTGTGGAATCCAAGCTCGAAGCAGTTCTGAGGGACATA CAGGCAGCGAAAGCGTCCGAGAGGCTGGCGCTCGATACTCTGACGACGACGACACTGGAG GAGCACAGCAAGGTCGGCGCTCGATACTCTGAGACGGTCACGCTTGACCTGGATGAGTAC ACGTCTCTGGTTCAGAGGTCACGTCAGGCAGAAGAGGCTGCGCACGAGAAGACAACAGCT GCTTCCACCGCAGAGGTTGAGGCGGCAAAGGAGTCCGCGGCGCGCACCATATCCAGACTG AACGAGATCTTGCAGGCCTTGGAAGAGCAGAAGCAGGCACTGGCAGCCGCCACCGAGCGG GCGGGCAGGGCGAGCGAAGGCAAGCTGGCCATGGAGCAGGAGCTGAGGCAACGGAGAGAG GAGGAGAACGGGAAGCGCCGCCGCATGGCCAGTGAAGCTCCAAAGCCTGTAACCGGGCCT CGGAGCGCTGCAGAGATCGCGGGTAGAGTCGACATGACGTTGACGTGCACGGGCAAAGGA GATAGTAGCTGTCCCGCCGCGTCGGTCCATCCGGTGTCGGACGCGTCCGGGACCGGGACC GGGAGGAGCAGCCCCAGCGATGCGGCCCTGCCAGTGCCAGTGCCAGCGAAGACGAAGAAG GCAAAGAAGCTGCCGTTCTTCACTCGCGTCGTCATGTTCCTGGGGGGCAGGAGGAGGAGG AGGCTCAGAGCTGCCAGGTGA

Peptide Sequence

PEP ID	Zm00001d027937_P023
PEP Infomation	pep chromosome:B73_RefGen_v4:1:17980399:17985592:1 gene:Zm00001d027937 transcript:Zm00001d027937_T023 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MKYKLVVLHTSIVSFVKSIVTQVQALTVLLPILNLVFTVFSSVSIKFVELWLEKMPDKKI EGADSSHIVSSTKSLESSVGPNLIESTDGDYCNNLHKTAVANFVASMLQEHPMSLILAEN KSNLQEISVEQKIPIFVSINLSPKVDGSELPCPIEVHDGITSSSSKTNEPMEAQDYSNTM KSNTASCMFEASKRQECPISLILADKKGSLQEVSVEQNVPCGDYVALSQKADGSELTSTR EAPEGFLTSSSKVYVLKEAQDGSITTEASKVNVCAASHSMLRLIEGVQDEASCIDSDKVT CETPPAILKKLKEDKPLVVHRFHKHQMSLGDTHQKVPAPVSRSNTSKYLRMDKNIVDTTT PIESVKAVASKFGGSMNWKTRKTQTAQVSDRIVLELDKLKNEISECKHQAEAAEAAKLSV LKELERTKKLIDEMKHVLEREQAEEVDAKDDLELFQIILQAMEGVDCNDSVVVREKLNNI QERHKALDAKVISVKYVLGKVQEDYDSLLIGTDISINKAQAAFTMSKGAEKEVEELTIEL QRLKEVFDLANAKFQDVEERKNTLMARDEDRLAWEEDLRQSDKELNQISMDLCSFQELQS KHDTSATMLLNLKNEVANYLEAKRIEEAREQESGTHKPVQEVIIMLKSELVEQRKSIARV TDELCVLKATAELLKSQLKKEKAALAAAQQMEVMASMSTQSLKMDIKLSQQELEALHAKA KECRDRSGKALQDASHEADEAKVIATKAQGELKKTEEEVAQAKAALSTVESKLEAVLRDI QAAKASERLALDTLTTTTLEEHSKVGARYSETVTLDLDEYTSLVQRSRQAEEAAHEKTTA ASTAEVEAAKESAARTISRLNEILQALEEQKQALAAATERAGRASEGKLAMEQELRQRRE EENGKRRRMASEAPKPVTGPRSAAEIAGRVDMTLTCTGKGDSSCPAASVHPVSDASGTGT GRSSPSDAALPVPVPAKTKKAKKLPFFTRVVMFLGGRRRRRLRAAR

Transcript Sequence

Transcript ID	Zm00001d027937_T023
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:17980399:17985592:1 gene:Zm00001d027937 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATAGATTCAGGAGTGGATCCAGATGATATAACTTTTGTTAGTATATTATCGGCCTGCGCT CATAATGGACTCGTAGAGCAAGGAAGAACATTGTTCAAATCGCTACAGGCAGACTATGGC ATTACACCGCGAATGGAGCATTATGCATGTATGGTGGATCTATTGGGCCGAACTGGCCAC TTGGATGAAGCATATGATGTTGTTAGGTCAATGCCATTCAGGCCATCAGATAACTTGCTT GAATCATTGCTTGGAGCATGCAGATTCCATGGTAATTATAAAATTGGCGAGTCTATAGGA AAATTACTCATCAAATCTGAGTATGGCAAGTCAAGGTCTTATGTTATGCTCTCGAACATA TATGCTTCAGCTGGCAAATGGAGTGATTGCGAGCAGCTAAGATTAGACATGGAAGCAAAA GGATTGCGGAAAAATGTGGGGGTTAGCTCTATTGGGATGACATAGCCCTGATGCAACAAT GTTATAGAGTTTTTCAGAAGTTTTTTCCCCCACACATTACAGTTTCGGGAAATGCCTTCA GAGTAATTTGAACTTCAAAAGTAATGCTTCTATCTAGTTGACCTTTCTTACAGGGAGTCA CTAGGGCATTTTTTGTGCACAGGAAAACATTCCATTACTGTTCAACCCCATAATATGTTG GAGTCGTTAACTGCACTAAAGTGAACTATTTCTATCTATGCGCAACAAGGAGTGTTGCAT CTAATATCTACTACAATTTCCAAGGAAGAGGCAGTTGAATGTTTCTAGCAGACACCTGCA ATTCTGAAATGTCATTACTGTCTAGTTGTATTAGATTACTAGATTAGGGAACAAGTCCCA GTCTTCTCCTGTTGTTATTATATTTGTATTCCCCCTCCCAAATTGCTCTCCACCACTTCA AGTCTCTGCCCTACCTCCAGTCTTCTCTTGAAACAACATGCGTATTGCCAAAATCCCTTG TTCTAGCTCTAATAGTCTCCTGGGATAAAAGCATACACGTTCAAGTGTCTTGAGTAAGTT TCAGATTATATTTTGTATTTATATTTTGGTTTGTTTTCTGATTCATGTAGTCTTTTGGAA TACTTTACCTTTTCATGTGGTGTTTTTTATTGCCTTCACTTTCTTTTGACTGTTCTGATT ATTTGTTTCATGAGTTATTTTGTGATGTTCTTTTGGTTTTTGTGTTTTGCATTGAGTTTG CTTAGATTTCATGGCAAAAAATACCATGGGGTATTCATATGTTTCCAATAATCATATAAT CATTGTTGAGCCATGATACTTAGCTAGAAAAAGTTATAACCTGACAAATAATCAGGTCAG TGGTTTGTGCCTTATAATGATGAGTATGCACGATTGACAAATTTTTTTTCTAGTTCTCAA TCTGATCATTGAAGGACAGGCCTGACGTAGTGGCGAAAAGCCTTTCCACTGAGCCAAAAG GTCTTAGGTTCGTCGTAGCCTCTCTGCAAAAAAAAAAAGGTGCAAGAGTAAAGCTTGCCT TGGTTATTTTTACCCAAGTCGGAGCTGCCAGCTCTGGGTCTGTCCTCTCAATTTTGATCA CTACTGAATGTTCTTGTTTGAGAGCCTTCATAGATGAAGGATAATCATTCAGTAATACAG TACTGTGATTCATTATCTGCATCAATTTGATCAATAACTTAACATTTTAGATTCACATTG ATGAAATACAAGCTTGTTGTTCTGCACACATCTATTGTTTCTTTTGTAAAATCAATTGTG ACACAAGTCCAGGCTTTGACTGTTTTGTTGCCCATCCTGAATCTTGTCTTCACTGTTTTT TCTTCAGTTAGTATCAAATTTGTTGAGCTGTGGCTTGAGAAGATGCCAGACAAGAAGATC GAAGGGGCTGATTCATCTCACATTGTCTCTTCAACAAAATCTTTGGAAAGTTCAGTAGGG CCTAATCTAATTGAAAGTACTGATGGAGATTATTGTAATAACCTTCACAAGACAGCAGTT GCCAATTTTGTGGCATCAATGCTGCAAGAACATCCTATGAGCCTTATATTGGCTGAGAAC AAAAGCAATTTGCAAGAAATTTCAGTTGAACAGAAGATTCCTATCTTTGTTTCTATCAAC CTTTCACCAAAAGTGGATGGCAGTGAATTGCCATGCCCCATTGAAGTTCATGATGGTATT ACATCTTCCTCTAGCAAAACTAACGAACCAATGGAAGCCCAAGATTATTCGAACACAATG AAATCAAACACAGCTAGTTGCATGTTCGAGGCATCAAAGCGGCAAGAATGCCCTATAAGC CTCATATTGGCAGACAAGAAAGGCAGTTTGCAAGAAGTTTCAGTTGAACAAAATGTTCCT TGTGGTGATTATGTTGCCCTTTCACAAAAAGCAGACGGTAGTGAATTGACATCAACCCGT GAAGCTCCTGAAGGCTTTCTAACTTCCTCTAGCAAAGTTTATGTATTAAAGGAAGCCCAA GATGGTTCTATCACAACGGAAGCTTCTAAAGTAAATGTTTGTGCAGCTTCACACTCCATG CTTAGGTTAATTGAAGGAGTCCAGGATGAGGCTTCTTGTATTGATTCTGATAAGGTTACT TGTGAAACACCACCTGCCATCCTGAAAAAGTTGAAAGAAGATAAGCCACTGGTCGTCCAT AGATTTCATAAGCACCAAATGAGCCTAGGAGACACACATCAAAAGGTGCCTGCACCTGTG AGCAGATCAAACACCAGCAAATACTTAAGAATGGATAAAAACATTGTTGATACTACGACT CCCATTGAATCAGTAAAGGCTGTTGCATCAAAATTTGGTGGCAGCATGAACTGGAAAACT CGCAAGACACAGACAGCACAGGTGAGTGACCGTATCGTACTTGAGCTTGATAAGCTGAAG AACGAAATTTCAGAATGTAAACATCAAGCAGAAGCTGCAGAGGCTGCAAAGTTATCAGTA TTAAAAGAGCTGGAGAGAACAAAGAAGCTTATCGACGAAATGAAACACGTCCTGGAGAGG GAACAAGCTGAGGAGGTGGATGCCAAGGATGACTTGGAGTTATTTCAAATTATATTACAA GCGATGGAGGGAGTTGACTGTAATGATAGTGTTGTGGTTAGAGAGAAGCTGAATAATATT CAAGAACGACACAAAGCATTGGATGCCAAAGTGATTTCAGTGAAATATGTGTTGGGAAAA GTGCAGGAGGATTATGATTCTTTGTTGATCGGAACTGATATTTCCATTAACAAAGCTCAG GCAGCCTTCACAATGTCCAAAGGTGCAGAGAAAGAAGTAGAGGAGCTCACCATAGAGCTC CAAAGACTAAAGGAAGTGTTTGATTTGGCTAACGCCAAATTCCAGGACGTGGAAGAACGC AAGAACACGTTGATGGCACGTGATGAGGATCGTCTTGCATGGGAAGAGGATCTCAGGCAA TCAGACAAAGAGCTGAATCAGATCAGCATGGACCTTTGTTCTTTTCAAGAATTGCAATCA AAGCATGATACGTCAGCCACCATGTTGCTCAATCTGAAGAATGAGGTAGCCAATTATTTG GAGGCAAAGCGAATCGAGGAAGCACGAGAACAAGAAAGTGGAACTCATAAACCCGTGCAA GAAGTCATCATTATGTTAAAGAGCGAGCTCGTGGAGCAGAGGAAGAGCATAGCGAGGGTG ACGGATGAATTATGTGTTCTGAAAGCCACAGCTGAATTGCTAAAATCGCAATTGAAGAAA GAGAAAGCAGCACTTGCTGCCGCTCAGCAGATGGAAGTGATGGCATCCATGTCCACTCAG TCTCTCAAGATGGACATCAAACTGTCACAGCAGGAACTTGAAGCACTTCATGCCAAGGCA AAGGAGTGCCGAGATAGATCGGGCAAGGCTCTGCAAGATGCGTCCCATGAAGCTGACGAG GCGAAGGTTATTGCTACCAAGGCTCAGGGGGAGCTAAAAAAGACAGAGGAAGAAGTGGCG CAAGCGAAGGCTGCTCTGAGCACTGTGGAATCCAAGCTCGAAGCAGTTCTGAGGGACATA CAGGCAGCGAAAGCGTCCGAGAGGCTGGCGCTCGATACTCTGACGACGACGACACTGGAG GAGCACAGCAAGGTCGGCGCTCGATACTCTGAGACGGTCACGCTTGACCTGGATGAGTAC ACGTCTCTGGTTCAGAGGTCACGTCAGGCAGAAGAGGCTGCGCACGAGAAGACAACAGCT GCTTCCACCGCAGAGGTTGAGGCGGCAAAGGAGTCCGCGGCGCGCACCATATCCAGACTG AACGAGATCTTGCAGGCCTTGGAAGAGCAGAAGCAGGCACTGGCAGCCGCCACCGAGCGG GCGGGCAGGGCGAGCGAAGGCAAGCTGGCCATGGAGCAGGAGCTGAGGCAACGGAGAGAG GAGGAGAACGGGAAGCGCCGCCGCATGGCCAGTGAAGCTCCAAAGCCTGTAACCGGGCCT CGGAGCGCTGCAGAGATCGCGGGTAGAGTCGACATGACGTTGACGTGCACGGGCAAAGGA GATAGTAGCTGTCCCGCCGCGTCGGTCCATCCGGTGTCGGACGCGTCCGGGACCGGGACC GGGAGGAGCAGCCCCAGCGATGCGGCCCTGCCAGTGCCAGTGCCAGCGAAGACGAAGAAG GCAAAGAAGCTGCCGTTCTTCACTCGCGTCGTCATGTTCCTGGGGGGCAGGAGGAGGAGG AGGCTCAGAGCTGCCAGGTGATTTTCCGTTTCCTTGTGTTCCTTATCTGTGTGCCCGTGT CGCGTGTGGTGTTTGTCAGTGCTGGGAGCGTGTAAACTTCACTGGTTTTTACTCGATTGC ACGTTGTTCGTGCTGGATGTGTTCGAAGATTGTGTGAGATTGCATGGGGTGTTCGGTTTG CTGGACAAGACAAGATGGTTCTGTAACACGGTTGGCTTGGGTTTTTTTTT