Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027936_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:1:17966098:17972458:1 gene:Zm00001d027936 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:viviparous5 description:15-cis-phytoene desaturase chloroplastic/chromoplastic
Sequence

ATGGACACTGGCTGCCTGTCATCTATGAATATTACTGGAGCTAGCCAGACAAGATCTTTT
GCGGGGCAACTTCCTCCTCAGAGATGTTTTGCGAGTAGTCACTATACAAGCTTTGCCGTG
AAAAAACTTGTCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAG
GTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTATTTGGAAGCT
GGACAGCTCTCTTCATTTTTTAGAAACAGCGAACGCCCCAGTAAGCCGTTGCAGGTCGTG
GTTGCTGGTGCAGGATTGGCTGGTCTATCAACAGCGAAGTATCTGGCAGATGCTGGACAT
AAACCCATATTGCTTGAGGCAAGAGATGTTTTGGGTGGAAAGGTAGCTGCTTGGAAGGAT
GAAGATGGAGATTGGTACGAGACTGGGCTTCATATCTTTTTTGGAGCTTATCCCAACATA
CAGAATCTGTTTGGCGAGCTTAGGATTGAGGATCGTTTACAGTGGAAAGAACACTCTATG
ATATTCGCCATGCCAAACAAGCCAGGAGAATTCAGCCGGTTTGATTTCCCAGAAACTTTG
CCAGCACCTATAAATGGGATATGGGCCATATTGAGAAACAATGAAATGCTTACCTGGCCC
GAGAAGGTGAAGTTTGCAATCGGACTTCTGCCAGCAATGGTTGGTGGTCAACCTTATGTT
GAAGCTCAAGATGGCTTAACCGTTTCAGAATGGATGAAAAAGCAGGGTGTTCCTGATCGG
GTGAACGATGAGGTTTTTATTGCAATGTCCAAGGCACTCAATTTCATAAATCCTGATGAG
CTATCTATGCAGTGCATTTTGATTGCTTTGAACCGATTTCTTCAGGAGAAGCATGGTTCT
AAAATGGCATTCTTGGATGGTAATCCGCCTGAAAGGCTATGCATGCCTATTGTTGATCAC
ATTCGGTCTAGGGGTGGAGAGGTCCGCCTGAATTCTCGTATTAAAAAGATAGAGCTGAAT
CCTGATGGAACTGTAAAACACTTCGCACTTAGTGATGGAACTCAGATAACTGGAGATGCT
TATGTTTGTGCAACACCAGTCGATATCTTCAAGCTTCTTGTACCTCAAGAGTGGAGTGAA
ATTACTTATTTCAAGAAACTGGAGAAGTTGGTGGGAGTTCCTGTTATCAATGTTCATATA
TGGTTTGACAGAAAACTGAACAACACATATGACCACCTTCTTTTCAGCAGGAGTTCACTT
TTAAGTGTCTATGCAGACATGTCAGTAACCTGCAAGGAATACTATGACCCAAACCGTTCA
ATGCTGGAGTTGGTCTTTGCTCCTGCAGACGAATGGATTGGTCGAAGTGACACTGAAATC
ATCGATGCAACTATGGAAGAGCTAGCCAAGTTATTTCCTGATGAAATTGCTGCTGATCAG
AGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAGATCGGTTTACAAAACT
GTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAGGTCACCTATCGAAGGTTTCTATCTA
GCTGGTGATTACACAAAGCAGAAATACCTGGCTTCCATGGAAGGTGCAGTCCTATCCGGG
AAGCTTTGCGCCCAGTCCATTGTGCAGGATTATAGCAGGCTCACACTCAGGAGCCAGAAA
AGCCTACAATCAGGAGAAGTTCCCGTCCCATCTTAG

Peptide Sequence

PEP ID

Zm00001d027936_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:1:17966098:17972458:1 gene:Zm00001d027936 transcript:Zm00001d027936_T005 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:viviparous5 description:15-cis-phytoene desaturase chloroplastic/chromoplastic
Sequence

MDTGCLSSMNITGASQTRSFAGQLPPQRCFASSHYTSFAVKKLVSRNKGRRSHRRHPALQ
VVCKDFPRPPLESTINYLEAGQLSSFFRNSERPSKPLQVVVAGAGLAGLSTAKYLADAGH
KPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELRIEDRLQWKEHSM
IFAMPNKPGEFSRFDFPETLPAPINGIWAILRNNEMLTWPEKVKFAIGLLPAMVGGQPYV
EAQDGLTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS
KMAFLDGNPPERLCMPIVDHIRSRGGEVRLNSRIKKIELNPDGTVKHFALSDGTQITGDA
YVCATPVDIFKLLVPQEWSEITYFKKLEKLVGVPVINVHIWFDRKLNNTYDHLLFSRSSL
LSVYADMSVTCKEYYDPNRSMLELVFAPADEWIGRSDTEIIDATMEELAKLFPDEIAADQ
SKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSG
KLCAQSIVQDYSRLTLRSQKSLQSGEVPVPS

Transcript Sequence

Transcript ID

Zm00001d027936_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:17966098:17972458:1 gene:Zm00001d027936 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:viviparous5 description:15-cis-phytoene desaturase chloroplastic/chromoplastic
Sequence

GGAGGTCTCCACTCTTCTCTCTTCCTCCATCTTATCATCGCCCACGTACACACCCAATTC
CTCGCAACTGGGCTCCCCCGCCTCCACGACACTGCCCCCCGCCTCAAGTCCGCCGCCTCC
ATTCTTCAGCTCTCCTATCCTCCGTAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGA
CCCCCACTTTATCAAGAGTTGCTCAACAATGGACACTGGCTGCCTGTCATCTATGAATAT
TACTGGAGCTAGCCAGACAAGATCTTTTGCGGGGCAACTTCCTCCTCAGAGATGTTTTGC
GAGTAGTCACTATACAAGCTTTGCCGTGAAAAAACTTGTCTCAAGGAATAAAGGAAGGAG
ATCACACCGTAGACATCCTGCCTTGCAGGTTGTCTGCAAGGATTTTCCAAGACCTCCACT
AGAAAGCACAATAAACTATTTGGAAGCTGGACAGCTCTCTTCATTTTTTAGAAACAGCGA
ACGCCCCAGTAAGCCGTTGCAGGTCGTGGTTGCTGGTGCAGGATTGGCTGGTCTATCAAC
AGCGAAGTATCTGGCAGATGCTGGACATAAACCCATATTGCTTGAGGCAAGAGATGTTTT
GGGTGGAAAGGTAGCTGCTTGGAAGGATGAAGATGGAGATTGGTACGAGACTGGGCTTCA
TATCTTTTTTGGAGCTTATCCCAACATACAGAATCTGTTTGGCGAGCTTAGGATTGAGGA
TCGTTTACAGTGGAAAGAACACTCTATGATATTCGCCATGCCAAACAAGCCAGGAGAATT
CAGCCGGTTTGATTTCCCAGAAACTTTGCCAGCACCTATAAATGGGATATGGGCCATATT
GAGAAACAATGAAATGCTTACCTGGCCCGAGAAGGTGAAGTTTGCAATCGGACTTCTGCC
AGCAATGGTTGGTGGTCAACCTTATGTTGAAGCTCAAGATGGCTTAACCGTTTCAGAATG
GATGAAAAAGCAGGGTGTTCCTGATCGGGTGAACGATGAGGTTTTTATTGCAATGTCCAA
GGCACTCAATTTCATAAATCCTGATGAGCTATCTATGCAGTGCATTTTGATTGCTTTGAA
CCGATTTCTTCAGGAGAAGCATGGTTCTAAAATGGCATTCTTGGATGGTAATCCGCCTGA
AAGGCTATGCATGCCTATTGTTGATCACATTCGGTCTAGGGGTGGAGAGGTCCGCCTGAA
TTCTCGTATTAAAAAGATAGAGCTGAATCCTGATGGAACTGTAAAACACTTCGCACTTAG
TGATGGAACTCAGATAACTGGAGATGCTTATGTTTGTGCAACACCAGTCGATATCTTCAA
GCTTCTTGTACCTCAAGAGTGGAGTGAAATTACTTATTTCAAGAAACTGGAGAAGTTGGT
GGGAGTTCCTGTTATCAATGTTCATATATGGTTTGACAGAAAACTGAACAACACATATGA
CCACCTTCTTTTCAGCAGGAGTTCACTTTTAAGTGTCTATGCAGACATGTCAGTAACCTG
CAAGGAATACTATGACCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGACGA
ATGGATTGGTCGAAGTGACACTGAAATCATCGATGCAACTATGGAAGAGCTAGCCAAGTT
ATTTCCTGATGAAATTGCTGCTGATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGT
GAAGACACCGAGATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCA
AAGGTCACCTATCGAAGGTTTCTATCTAGCTGGTGATTACACAAAGCAGAAATACCTGGC
TTCCATGGAAGGTGCAGTCCTATCCGGGAAGCTTTGCGCCCAGTCCATTGTGCAGGATTA
TAGCAGGCTCACACTCAGGAGCCAGAAAAGCCTACAATCAGGAGAAGTTCCCGTCCCATC
TTAGTTGTAGTTGGCTTTAGCTATCGTCATCCCCACTGGGTGCTATCTTATCTCCTATTT
CAATGGGAACCCACCCAATGGTCATGTTGGAGACAACACCTGTTATGGTCCTTTGACCAT
CTCGTGGTGACTGTAGTTGATGTCATATTCGGATATATATGTAAAAGGATCTGCATAGCA
ATTGTTAGACCTTTGGGAAAGCAAAAGCGATAAAGAGATCTCAGATAGATATTGTGTTCT
TTCAGACGGTGGTTCCTATTCCTATCAATCGGTTAATCCATCCCACATGGGAGGATTTGT
GGTAAGCTTAGTCAGCAAACCTCTGGTGGTCCCTGCTCCCTGAACTTTATCGGGAGAGCT
GCTGTAGCAATCCCCGAAGCCGTGTGCCGTTTATCTTGTCGGGCATACTTTATTTGCCGA
GTTGCAGTTATTAAGCACAGGGAGGTGCGGAATGCACTTCGGGCGTCGAAGATATTTTTG
C