Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027916_T014
CDS Infomation

cds chromosome:B73_RefGen_v4:1:17534035:17552820:1 gene:Zm00001d027916 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoinositide phosphatase SAC2
Sequence

ATGCTCTCATCGCTCAATTTCTGTAGATATAAGCACCTGCTTTGCTCAGTTGATCTTTCG
AAGGATTTCTTCTTCAGCTACTCTTACAACATCATGCACAGCCTTCAGAAGAACATAACC
GAGAAGAACATTGGGCAGGTTTATGAAACAATGTGTGTATGGAATGAATTTATGACACGA
GCAATTCGGGATCATCTCATGAATACCTGTTGGACTGTTGCTTTAGTCCATGGATTTTTT
AAGCAGTCAAGGTTCTCTGTGTCTGGGAAGGATTTTTGGCTGACGCTTATAGCTAGGCGC
TCACGCCATTTTGCTGGGACCAGATTCTTGAAACGTGGTGTTAATGGAAAGGGCAGGGTA
GCCAATGATGTTGAGACTGAACAGATTGTTTTTGAAGACACATCTGGTGGAATCCCAACT
CAGATGGCTTCTGTTGTACAACATAGAGGATCGATACCTCTTGTCTGGTTTCAGGAAACT
TCAAGACTTAATATTAGACCAGATATTATATTAAAACCTGATCTGGACTACAAGGCAACC
CGCCTTCATTTTGAGAACCTTGCACTTAGATATGGGAATCCAATAATCATATTGAACTTA
ATAAAGACCCACGAGAAGAAGCCCCGTGAATCTCTGCTCTGTGCAGAATTTGCAAAGGCT
ATTCATTACATTAACAAGAGCCTATCTGATGACAAGTGTCTAAAATTTCTGCACATGGAT
CTGAGTAATCTTTTTCGAAGGAAAGGCACCAATGTGCTTGCACTGTTGAGCAAGGTGGCA
TCAGATGTGTTGGATCTAACTGAATTCCTCCACTGCGAAATAAGTACATCAACAAAATCT
GATGACATCTCAAGTGAAGAAAAAACTGTTGCCAAACCACGTGATGACAGAAGTAGCAGA
GATCAAACTGAATGTGCAGCTAAGTTGGTACCTCTTTTATTACAGAAGGGTGTCCTCAGG
ACAAATTGTATAGACTGCTTGGATCGCACAAATGTTGCACAATTTTCATATGGTTTAGCT
GCTTTAGGGCGTCAACTTCATGCACTGGGACTTGCTGAAGCACATAAAATTGAATTGCAT
GATCCTCTGGTTGATGATCTGATGGATTTCTATGAACGGATGGGTGATACATTAGCTATT
CAGTATGGTGGCTCTGCTGCTCACAACAAGATCTTCTGTGAGCAAAGGGGCCAATGGAAG
GCAACAACCCAATCTCAGGAGTTCCTTCGAACCCTTCAACGCTACTACAATAACGCCTAC
ACTGATCACGAGAAGCAGGATGCTATAAACATGTTCTTAGGTCATTTCCAACCTCAGCAA
GGGAAACCTGCATTGTGGAAGCTGGACTCAGATCAGCATTACAACATTGGGAGGCAAGGA
ACTTTAAAAGAAGAGATTGGAAGATCATTCATAAAGAGGTCACTATCAGATGGTAACATA
CTGTTGGAGAGCAGCTTGCCTGTAACTATCTGTAACAATGAAACAGACAACACAGAATTG
CTCCCAGTGCAACAGCTGGATGATATTAGAGAAGCTTCTGATTCTGCGCCAGAGATCTCC
ATATGCGAACCTAACCTGTGCTCCAGTATGAACTATGGCACAGTGCCTGGAAGACACTCC
ATGTCAGAAGAGCGGCAGAGTTATTTGAAAAGATTAGGTTACCCTGAATTGCACTCTTCA
AATTTCTTTGACCTTGATTTGTTGTCATCTTCAGGAAATTCGTTTGACGAGGAAGTTTTT
GAGAGGTCATTACTGATCAATTCACCTATGGATGTGATCAGTCCTGAATCATCTATGTCA
TACAGTGAACAAGGACACACTGATGAGGGAAGAGATGACACGGATCTTTCCCGTTCTAGC
AGCCAGCTCTCAGACATTCGGGACTACTCTGACCACTTTGCGCAGTGGGTCGTGAATGGA
GACACGCTTTGCTACTAG

Peptide Sequence

PEP ID

Zm00001d027916_P014
PEP Infomation

pep chromosome:B73_RefGen_v4:1:17534035:17552820:1 gene:Zm00001d027916 transcript:Zm00001d027916_T014 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoinositide phosphatase SAC2
Sequence

MLSSLNFCRYKHLLCSVDLSKDFFFSYSYNIMHSLQKNITEKNIGQVYETMCVWNEFMTR
AIRDHLMNTCWTVALVHGFFKQSRFSVSGKDFWLTLIARRSRHFAGTRFLKRGVNGKGRV
ANDVETEQIVFEDTSGGIPTQMASVVQHRGSIPLVWFQETSRLNIRPDIILKPDLDYKAT
RLHFENLALRYGNPIIILNLIKTHEKKPRESLLCAEFAKAIHYINKSLSDDKCLKFLHMD
LSNLFRRKGTNVLALLSKVASDVLDLTEFLHCEISTSTKSDDISSEEKTVAKPRDDRSSR
DQTECAAKLVPLLLQKGVLRTNCIDCLDRTNVAQFSYGLAALGRQLHALGLAEAHKIELH
DPLVDDLMDFYERMGDTLAIQYGGSAAHNKIFCEQRGQWKATTQSQEFLRTLQRYYNNAY
TDHEKQDAINMFLGHFQPQQGKPALWKLDSDQHYNIGRQGTLKEEIGRSFIKRSLSDGNI
LLESSLPVTICNNETDNTELLPVQQLDDIREASDSAPEISICEPNLCSSMNYGTVPGRHS
MSEERQSYLKRLGYPELHSSNFFDLDLLSSSGNSFDEEVFERSLLINSPMDVISPESSMS
YSEQGHTDEGRDDTDLSRSSSQLSDIRDYSDHFAQWVVNGDTLCY

Transcript Sequence

Transcript ID

Zm00001d027916_T014
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:17534035:17552820:1 gene:Zm00001d027916 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoinositide phosphatase SAC2
Sequence

TCTCTGGTCGAGGAGTCGATTTGGATCCGTTTATCGCTAGTTTGGTCGTCGTTGATCTGA
AAGGTGGAGCTTTGGTCGATTTTCTCTTCCAGAAGCATTTGTGTTTCTGAGGTGCTAAGG
TGCTATATCTGAAGCAGCCGACGAGGAGCTGAGTCTTTGATTTTTTTTTTACCAATTTCT
GTCGTCGTTTGTTGATCTGATCCGATGGAGGCTATGACGGGTGGCAAATTCCTTCAAAAG
TTTCGGCTCTACGAAACCAGATCGGTACGAATCTCTTGCAAATCTCGTTTAAGGCTGTTT
GAACTTAGAGATCCCTATGGCAGTGGCACCAAACATCTTGTGTTTGACTTTACGAGGGTC
GTGTTTTTAAACTTTTGTTTATGACGAAGTCTTGTGTGATTTAGTACTATCATCGCGTGA
TGGATATCCATTATGATTCGTTCTGTTCAATTAAGTTACTGGAAAGGGGAAAAATGCTGC
AAAAGATCCTTTTGTTTCTTTTGCAATGGAGGAACGAGAATGAAAACAAAACGGATGTTT
CCCTTTTTGCTAATTCCTTGCAATTGTTTCAGATGTATTAAACCGTTCGCTAGAATGATG
TTTTGGTTTTACTGTTCTGTAGTTTGGCTCCTATAGTGCAATAGCCTTCTGCTTTGATTG
TGTTATGCCAATTCAAAAATACAAGATTTCATCTTTCGTTTGCATATGCATTATGCATAT
GCCTTTACAAGTGTCCAGGATAGAAATTTTATCTTATTGGAAGAGACAAGAGCAGGATTC
ACTGGAGGGTGCTAAAAATTGATCGGTCGGAGTTCACTGAGTTGGGTGTCGAGGAGGATC
CAACTATTTACACAGAGAATGAATGCCAAGAACTGCTTCGGCGGATCCATGAGGGGAACA
GGTTGACCGGTGGACTGAAATTTGTCACAAAATGTTACGGAATAGTTGGTTTTGTAAAGT
TTCTTGGTCCTTATTACATGGTTATAATAACCAGGAGAAGGAAAATTGGCACAATATGTG
GCCATGAAATTTATTCCGTTGGCAAGAGCGAAATGATTGCAATTCCGAGTGTTACAGTCT
GGCCCAACATGGCTTATTCTAGGGATGAAAACAGGTCTTTTATTTTTTTCAACATGTAAA
TATTGTGTATTGCCTGTTGTAATTCCATCAGTGGTTCTTAACATTATCTATAATGCGAGC
TTGCTATCTAGTGTATGTTCTATAGCTTTGCTATTCATCTACCTTATCGTTGGTTGCTTT
CTTTCCAAATAGTTTGTCTCATTTTGGTTGCTATGTTGTGTTGAGGCACTCTTTATGTTG
ATGTACCCCTGCTCCCTTCTTTGTATTGTTTTGCATCGATTCGCATAATGACATTCCAGT
TTACATCATTTGTTCATGTTCTACTAGAACATAGACAGTCCATTTTTTGATTTTGTTCCA
TTGTACAATACAATACAGTAATATTTTGTTCGATGTGTGTGTTTAGCTCCATTTCTCCTT
TGTGTATAAATTTGTTTGTTCAGAAACAACATACACCCAACTCATATAGCCAATACATAA
TGGAAAATCTTGCAGTTCTGAGCCTTGTGTAAGTTGTTCATATGTTTTGAAGTATATAGA
GAAGTTTCAAATTTCCTTGCCCCTATAGTATTCTACTTATTAACATTCATCGTTCCATAT
CCACGACAAGTATTTTTCAACTATTTTTTTTCCATTTTCATTGTATCAAAAGATTTATGC
TCTCATCGCTCAATTTCTGTAGATATAAGCACCTGCTTTGCTCAGTTGATCTTTCGAAGG
ATTTCTTCTTCAGCTACTCTTACAACATCATGCACAGCCTTCAGAAGAACATAACCGAGA
AGAACATTGGGCAGGTTTATGAAACAATGTGTGTATGGAATGAATTTATGACACGAGCAA
TTCGGGATCATCTCATGAATACCTGTTGGACTGTTGCTTTAGTCCATGGATTTTTTAAGC
AGTCAAGGTTCTCTGTGTCTGGGAAGGATTTTTGGCTGACGCTTATAGCTAGGCGCTCAC
GCCATTTTGCTGGGACCAGATTCTTGAAACGTGGTGTTAATGGAAAGGGCAGGGTAGCCA
ATGATGTTGAGACTGAACAGATTGTTTTTGAAGACACATCTGGTGGAATCCCAACTCAGA
TGGCTTCTGTTGTACAACATAGAGGATCGATACCTCTTGTCTGGTTTCAGGAAACTTCAA
GACTTAATATTAGACCAGATATTATATTAAAACCTGATCTGGACTACAAGGCAACCCGCC
TTCATTTTGAGAACCTTGCACTTAGATATGGGAATCCAATAATCATATTGAACTTAATAA
AGACCCACGAGAAGAAGCCCCGTGAATCTCTGCTCTGTGCAGAATTTGCAAAGGCTATTC
ATTACATTAACAAGAGCCTATCTGATGACAAGTGTCTAAAATTTCTGCACATGGATCTGA
GTAATCTTTTTCGAAGGAAAGGCACCAATGTGCTTGCACTGTTGAGCAAGGTGGCATCAG
ATGTGTTGGATCTAACTGAATTCCTCCACTGCGAAATAAGTACATCAACAAAATCTGATG
ACATCTCAAGTGAAGAAAAAACTGTTGCCAAACCACGTGATGACAGAAGTAGCAGAGATC
AAACTGAATGTGCAGCTAAGTTGGTACCTCTTTTATTACAGAAGGGTGTCCTCAGGACAA
ATTGTATAGACTGCTTGGATCGCACAAATGTTGCACAATTTTCATATGGTTTAGCTGCTT
TAGGGCGTCAACTTCATGCACTGGGACTTGCTGAAGCACATAAAATTGAATTGCATGATC
CTCTGGTTGATGATCTGATGGATTTCTATGAACGGATGGGTGATACATTAGCTATTCAGT
ATGGTGGCTCTGCTGCTCACAACAAGATCTTCTGTGAGCAAAGGGGCCAATGGAAGGCAA
CAACCCAATCTCAGGAGTTCCTTCGAACCCTTCAACGCTACTACAATAACGCCTACACTG
ATCACGAGAAGCAGGATGCTATAAACATGTTCTTAGGTCATTTCCAACCTCAGCAAGGGA
AACCTGCATTGTGGAAGCTGGACTCAGATCAGCATTACAACATTGGGAGGCAAGGAACTT
TAAAAGAAGAGATTGGAAGATCATTCATAAAGAGGTCACTATCAGATGGTAACATACTGT
TGGAGAGCAGCTTGCCTGTAACTATCTGTAACAATGAAACAGACAACACAGAATTGCTCC
CAGTGCAACAGCTGGATGATATTAGAGAAGCTTCTGATTCTGCGCCAGAGATCTCCATAT
GCGAACCTAACCTGTGCTCCAGTATGAACTATGGCACAGTGCCTGGAAGACACTCCATGT
CAGAAGAGCGGCAGAGTTATTTGAAAAGATTAGGTTACCCTGAATTGCACTCTTCAAATT
TCTTTGACCTTGATTTGTTGTCATCTTCAGGAAATTCGTTTGACGAGGAAGTTTTTGAGA
GGTCATTACTGATCAATTCACCTATGGATGTGATCAGTCCTGAATCATCTATGTCATACA
GTGAACAAGGACACACTGATGAGGGAAGAGATGACACGGATCTTTCCCGTTCTAGCAGCC
AGCTCTCAGACATTCGGGACTACTCTGACCACTTTGCGCAGTGGGTCGTGAATGGAGACA
CGCTTTGCTACTAGGCCCTGGACTTTTGTCTTGGTGACAGCTCAGTAGATGTGACACGGC
AGGAAATGGAAGTCTGACGGATAGAGCAGATGAAATGGCTGACGAAGAGGTGGTGGACAT
GGGAGAAGTCTCGCATCG