Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027908_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:17362175:17365193:1 gene:Zm00001d027908 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable flavin-containing monooxygenase 1
Sequence

ATGGCGGCGGCGCAGCAGCAGTCACGGAGCACGAGGCAGGCGGTGCCGGCGTCGTCGAGG
GTCGCGATCATCGGCGGCGGCATCAGCGGGCTCGCGGCGGCGAAGCAGCTGGCGGCGCAC
GACCCCGTGGTGTTCGAGGCGACGCCGTCCATCGGCGGGGTGTGGAAGCACTGCGTGTAC
CGGTCGACCCGGCTGCAGACGCCGCGGCCGGACTACGAGTTCTCCGACTACTCGTGGCGC
AACCGCGACGACCCGACGTTCCCGACGCACGGCGAGATCGTCGAGTACCTCGAGGGCTAC
GCCGACACCTTCGGGCTGTGGCGCTACATCATGCTCGGCGCCAAGGTGGTCGACGTCAAG
TTCCTCGGCGGCGCGGCCGCTGGGTTCACGGAGCGCTGGAGCGGCACCGGCGAGGCGCTC
CAGGGGAAGCCCATGTGGGAGGTCGGCGTCGCCACCGCCGGCTCCCACACCGTTCAGTAC
TACCAGTTCGAGTTCGTGGTGGTGTGCGCCGGCAAGTACGGCGACGTGCCGCGGATGCCG
GTGTCGTTCCCGGAAGGCAAGGGGCCGGAGGTGTTCCGGGGGCAGGTGATGCACTCCCTG
GACTACTGCAAGCTGAGCGAGGAGGAGACCGTGGAGCTGATGAGGGGGAAGAAGGTGGTG
GTCGTCGGGTACAAGAAGAGCGCCATCGATCTAGCACTTGAATGCGCCCAGGCCAACCAA
GGTGAGGGAGGCGAGGCTTGCACCATGCTGGTGAGGACCCTTCACTGGGTGGTGCCGTCC
TACTCCATCTGGGGCCTGCCCTTCTTCCTCTTCTACTCCACCCGCCTGGCGCAGTTCCTG
TACGAGCGCCCCAACCAGGGCATCCTCCGCTCCATGCTCTGCAGACTCATGACACCGCTG
AGAGCGGGCGTGTCCAAGTTCATCGAGTCCTACCTGGCGTGGAAGCTCCCGCTGGACAAG
TACGGCCTCCGCCCTGATCACCCCTTCGTGGAGGACTACGCCAGCTGCCAGATGGCCATC
CTCCCCGACGGCTTCTTCGACATGGCCGACCGGGACATGATCCGCTTCAAGAGGGCCTCC
GGCGGCTGGTGCTTCTCCCGCAACGGCGTCCTCCTCGACGACGGCACCGAGGTGGAGGCC
GACCTCGTCTTCCTCGCCACCGGCTTCGAGGGCAAGGACAAGGTCCGCGCCGTCCTCCCG
GACCCCTTCCGCGGCCTCGTCGTCGACAGGTCCGGCATGATGCCGCTGTACCGCGGCACC
ATCCACCCTCTGATCCCGAACATGGCGTTCGTGGGGTACGTGGAGAGCGTGTCCAACCTG
CACACGTCGGAGCTGCGCTGCCGCTGGCTGGCGGGCCTGCTCGGCGGCCGGTTCGCGCTG
CCCAGCGTGGAGGACATGGTGCGGCACGTCGAGGGCGAGGCGGAGGCCATGCGCCGCACC
ACGCGCTTCTACCGCCGCCACTGCATCTCCACCTACAGCATCCACGACAGCGACGCCATG
TGCGCTGACCTCGGCTCCAGGGTTCTCCGCAAGGGCAACTGGCTCGCCGAGCTCTTCGCG
CCCTACAACAACCAGGACTACAAGGAAGACTGA

Peptide Sequence

PEP ID

Zm00001d027908_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:17362175:17365193:1 gene:Zm00001d027908 transcript:Zm00001d027908_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable flavin-containing monooxygenase 1
Sequence

MAAAQQQSRSTRQAVPASSRVAIIGGGISGLAAAKQLAAHDPVVFEATPSIGGVWKHCVY
RSTRLQTPRPDYEFSDYSWRNRDDPTFPTHGEIVEYLEGYADTFGLWRYIMLGAKVVDVK
FLGGAAAGFTERWSGTGEALQGKPMWEVGVATAGSHTVQYYQFEFVVVCAGKYGDVPRMP
VSFPEGKGPEVFRGQVMHSLDYCKLSEEETVELMRGKKVVVVGYKKSAIDLALECAQANQ
GEGGEACTMLVRTLHWVVPSYSIWGLPFFLFYSTRLAQFLYERPNQGILRSMLCRLMTPL
RAGVSKFIESYLAWKLPLDKYGLRPDHPFVEDYASCQMAILPDGFFDMADRDMIRFKRAS
GGWCFSRNGVLLDDGTEVEADLVFLATGFEGKDKVRAVLPDPFRGLVVDRSGMMPLYRGT
IHPLIPNMAFVGYVESVSNLHTSELRCRWLAGLLGGRFALPSVEDMVRHVEGEAEAMRRT
TRFYRRHCISTYSIHDSDAMCADLGSRVLRKGNWLAELFAPYNNQDYKED

Transcript Sequence

Transcript ID

Zm00001d027908_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:17362175:17365193:1 gene:Zm00001d027908 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable flavin-containing monooxygenase 1
Sequence

CAAGCTTACATACAGAGCCCTACCGAGCAGCAGCTACGTTACTAGCGCTCTCGCTCGTCG
CTCACACAGCCTCCGATCCTACGCCTACGTACGCCGGCCGACGACGTCGAAGAGCACTAG
CTGAGGCACATCAGGCGGCTCGATCGCACCGTACGTCCGTACCCCTTCACCATCATTCCA
TCAAGCAAGGCAGCAAGCACCGTCATGGCGGCGGCGCAGCAGCAGTCACGGAGCACGAGG
CAGGCGGTGCCGGCGTCGTCGAGGGTCGCGATCATCGGCGGCGGCATCAGCGGGCTCGCG
GCGGCGAAGCAGCTGGCGGCGCACGACCCCGTGGTGTTCGAGGCGACGCCGTCCATCGGC
GGGGTGTGGAAGCACTGCGTGTACCGGTCGACCCGGCTGCAGACGCCGCGGCCGGACTAC
GAGTTCTCCGACTACTCGTGGCGCAACCGCGACGACCCGACGTTCCCGACGCACGGCGAG
ATCGTCGAGTACCTCGAGGGCTACGCCGACACCTTCGGGCTGTGGCGCTACATCATGCTC
GGCGCCAAGGTGGTCGACGTCAAGTTCCTCGGCGGCGCGGCCGCTGGGTTCACGGAGCGC
TGGAGCGGCACCGGCGAGGCGCTCCAGGGGAAGCCCATGTGGGAGGTCGGCGTCGCCACC
GCCGGCTCCCACACCGTTCAGTACTACCAGTTCGAGTTCGTGGTGGTGTGCGCCGGCAAG
TACGGCGACGTGCCGCGGATGCCGGTGTCGTTCCCGGAAGGCAAGGGGCCGGAGGTGTTC
CGGGGGCAGGTGATGCACTCCCTGGACTACTGCAAGCTGAGCGAGGAGGAGACCGTGGAG
CTGATGAGGGGGAAGAAGGTGGTGGTCGTCGGGTACAAGAAGAGCGCCATCGATCTAGCA
CTTGAATGCGCCCAGGCCAACCAAGGTGAGGGAGGCGAGGCTTGCACCATGCTGGTGAGG
ACCCTTCACTGGGTGGTGCCGTCCTACTCCATCTGGGGCCTGCCCTTCTTCCTCTTCTAC
TCCACCCGCCTGGCGCAGTTCCTGTACGAGCGCCCCAACCAGGGCATCCTCCGCTCCATG
CTCTGCAGACTCATGACACCGCTGAGAGCGGGCGTGTCCAAGTTCATCGAGTCCTACCTG
GCGTGGAAGCTCCCGCTGGACAAGTACGGCCTCCGCCCTGATCACCCCTTCGTGGAGGAC
TACGCCAGCTGCCAGATGGCCATCCTCCCCGACGGCTTCTTCGACATGGCCGACCGGGAC
ATGATCCGCTTCAAGAGGGCCTCCGGCGGCTGGTGCTTCTCCCGCAACGGCGTCCTCCTC
GACGACGGCACCGAGGTGGAGGCCGACCTCGTCTTCCTCGCCACCGGCTTCGAGGGCAAG
GACAAGGTCCGCGCCGTCCTCCCGGACCCCTTCCGCGGCCTCGTCGTCGACAGGTCCGGC
ATGATGCCGCTGTACCGCGGCACCATCCACCCTCTGATCCCGAACATGGCGTTCGTGGGG
TACGTGGAGAGCGTGTCCAACCTGCACACGTCGGAGCTGCGCTGCCGCTGGCTGGCGGGC
CTGCTCGGCGGCCGGTTCGCGCTGCCCAGCGTGGAGGACATGGTGCGGCACGTCGAGGGC
GAGGCGGAGGCCATGCGCCGCACCACGCGCTTCTACCGCCGCCACTGCATCTCCACCTAC
AGCATCCACGACAGCGACGCCATGTGCGCTGACCTCGGCTCCAGGGTTCTCCGCAAGGGC
AACTGGCTCGCCGAGCTCTTCGCGCCCTACAACAACCAGGACTACAAGGAAGACTGATCG
TCAACCGGACCTCCCTGCTGCCACACAAACTGATGATTCAAC