Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027904_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:17186476:17190166:1 gene:Zm00001d027904 gene_biotype:protein_coding transcript_biotype:protein_coding description:3-ketoacyl-CoA synthase

Sequence

ATGGCGCGGGAGGAGCAGGCGCTGCTGTCGACGGAGATCGTGAACCGCGGCGTGGAGCCG
TCGGGCCCGGACGCCGGCTCGCCGGCCTTCTCGGTGCGCGTGCGCCGCCGCCTGCCGGAC
TTCCTGCAGTCGGTGAACCTCAAGTACGTGCGCCTCGGGTACCACTACCTCATCAGCCAC
GGCGTGTACCTGGCCACCATCCCCGTCATCGTGCTGGTGTGCGGCGCCGAGCTGGGCAGC
CTCAGCCGCGACGAGCTGTGGCGCAAGGTGTGGGGGGAGGCCACCTACGACCTCGCCACC
GTGCTCGCCTTCCTCGCCGTCCTCGCCTTCACCATCTCCGTCTACATCATGTCCAGGCCC
AGGCCCGTGTACCTCATCGACTTCGCATGCTACAAGCCGGCCGACGAGCTCAAGGTGTCC
AAGGCGGAGTTCATCGACCTGGCGCGCAAGTCCGGCAAGTTCGACGAGGACAGCCTGGCG
TTCCAGTCGCGTCTGCTGGCCAAGTCCGGCATCGGCGACGAGTCGTACATGCCGCGCTGC
GTGTTCGAGCCCAACGCCAGCTGCGCCACCATGAAGGAGGGCCGCGCCGAGGCGTCCACG
GCCATGTTCGCGGCGCTGGACGAGCTGTTCGACAAGTGCCGCGTCCGGCCCAAGGACGTG
GGCGTGCTGGTGGTCAACTGCAGCCTCTTCAACCCGACGCCCTCCCTGTCCGCCATGATC
GTCAACCACTACAAGATGCGCGGCAACATCCTGAGCTACAACCTGGGGGGCATGGGCTGC
AGCGCGGGCGTCATCGCCATCGACCTGGCCCGCGACATGCTCCAGGCCAGCGGCGCTGGC
CTGGCCGTGGTGGTCAGCACGGAGGCCGTCTCCTTCACGTGGTACCCCGGGAAGCGGCGC
TCCATGCTCATCCCGAACGCCTTCTTCCGGGCCGGCTGCGCGGCGGTGCTGCTGTCCAAC
CGGCGCCGCGACTTCCACCGCGCCAAGTACCAGCTGGAGCACGTGGTGCGCACGCACAAG
GGCGCGGACGACCGCGCCTTCCGCTCCGTGTACCAGGAGGAGGACGAGCAGCGGATCAAG
GGCCTGTCCATCAGCCGCGACCTGCTGGAGGTGGGCGGCCACGCGCTCAAGACCAACATC
ACCACGCTGGGGCCCCTGGTGCTGCCCTTCTCCGAGCAGCTGCTCTTCTTCGCGGGCGTG
CTGTTCCGCCACCTGTTCCCGTCCAAGGCCTCCACGCCGGCGCCGCCGACCACCCCAGGG
GACGCCTCGGCCGCCGCGCCCTACATCCCGGACTTCAAGCGCGCGTTCGAGCACTTCTGC
ATGCACGCGGCCAGCCGCGACGTGCTGGAGCACCTGCAGAGCAACCTGGGCCTGCGCGAC
GCCGACCTGGAGGCCTCCCGCGCCGCGCTGCACCGCTTCGGCAACACCTCAAGCAGCAGC
ATCTGGTACGAGCTGGCGTACCTGGAGGCCAAGGGCCGCGTCCGCCGCGGCGACCGCGTC
TGGCAGCTCGCCTTCGGGTCGGGCTTCAAGTGCAACAGCGCGGTGTGGCGCGCCGTCCGC
CGCGTGCGCCGCCCCGCGCGCAGCCCCTGGCTGGACTGCATCGACCAGTACCCGGCGCGC
ATGGACGCCTAG

Peptide Sequence

PEP ID

Zm00001d027904_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:17186476:17190166:1 gene:Zm00001d027904 transcript:Zm00001d027904_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:3-ketoacyl-CoA synthase

Sequence

MAREEQALLSTEIVNRGVEPSGPDAGSPAFSVRVRRRLPDFLQSVNLKYVRLGYHYLISH
GVYLATIPVIVLVCGAELGSLSRDELWRKVWGEATYDLATVLAFLAVLAFTISVYIMSRP
RPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAFQSRLLAKSGIGDESYMPRC
VFEPNASCATMKEGRAEASTAMFAALDELFDKCRVRPKDVGVLVVNCSLFNPTPSLSAMI
VNHYKMRGNILSYNLGGMGCSAGVIAIDLARDMLQASGAGLAVVVSTEAVSFTWYPGKRR
SMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHVVRTHKGADDRAFRSVYQEEDEQRIK
GLSISRDLLEVGGHALKTNITTLGPLVLPFSEQLLFFAGVLFRHLFPSKASTPAPPTTPG
DASAAAPYIPDFKRAFEHFCMHAASRDVLEHLQSNLGLRDADLEASRAALHRFGNTSSSS
IWYELAYLEAKGRVRRGDRVWQLAFGSGFKCNSAVWRAVRRVRRPARSPWLDCIDQYPAR
MDA

Transcript Sequence

Transcript ID

Zm00001d027904_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:17186476:17190166:1 gene:Zm00001d027904 gene_biotype:protein_coding transcript_biotype:protein_coding description:3-ketoacyl-CoA synthase

Sequence

GGGACTGTGGCAACAATAGCAGCAGCCGGGCGGGAGCTCCCGCCTCCCGCTTCCCCCCCT
CCATCAGATGATCAGATCAGTCCGTCCCTGCCCATCTGCCCTGCTCTCTAATGGCATTAA
CTGCCGCCCACCCACCCGCCATCTCCTCCCCTACCCAGCTGCACGCTCCTCTTCTCCTGC
TAGCAGTACTGCTATATATCAATAATACTAGCTGGACCCTTTCCACTCCCCTCACCTCTC
ACTACCACCACCACTGCCCCGGATCCATACCAGCTGCAGCAGCAGCGCGCGCGAGCTAGC
TTCGGTCGGTCGATAGATCGATCGATCGCTCGGCCATCATGGCGCGGGAGGAGCAGGCGC
TGCTGTCGACGGAGATCGTGAACCGCGGCGTGGAGCCGTCGGGCCCGGACGCCGGCTCGC
CGGCCTTCTCGGTGCGCGTGCGCCGCCGCCTGCCGGACTTCCTGCAGTCGGTGAACCTCA
AGTACGTGCGCCTCGGGTACCACTACCTCATCAGCCACGGCGTGTACCTGGCCACCATCC
CCGTCATCGTGCTGGTGTGCGGCGCCGAGCTGGGCAGCCTCAGCCGCGACGAGCTGTGGC
GCAAGGTGTGGGGGGAGGCCACCTACGACCTCGCCACCGTGCTCGCCTTCCTCGCCGTCC
TCGCCTTCACCATCTCCGTCTACATCATGTCCAGGCCCAGGCCCGTGTACCTCATCGACT
TCGCATGCTACAAGCCGGCCGACGAGCTCAAGGTGTCCAAGGCGGAGTTCATCGACCTGG
CGCGCAAGTCCGGCAAGTTCGACGAGGACAGCCTGGCGTTCCAGTCGCGTCTGCTGGCCA
AGTCCGGCATCGGCGACGAGTCGTACATGCCGCGCTGCGTGTTCGAGCCCAACGCCAGCT
GCGCCACCATGAAGGAGGGCCGCGCCGAGGCGTCCACGGCCATGTTCGCGGCGCTGGACG
AGCTGTTCGACAAGTGCCGCGTCCGGCCCAAGGACGTGGGCGTGCTGGTGGTCAACTGCA
GCCTCTTCAACCCGACGCCCTCCCTGTCCGCCATGATCGTCAACCACTACAAGATGCGCG
GCAACATCCTGAGCTACAACCTGGGGGGCATGGGCTGCAGCGCGGGCGTCATCGCCATCG
ACCTGGCCCGCGACATGCTCCAGGCCAGCGGCGCTGGCCTGGCCGTGGTGGTCAGCACGG
AGGCCGTCTCCTTCACGTGGTACCCCGGGAAGCGGCGCTCCATGCTCATCCCGAACGCCT
TCTTCCGGGCCGGCTGCGCGGCGGTGCTGCTGTCCAACCGGCGCCGCGACTTCCACCGCG
CCAAGTACCAGCTGGAGCACGTGGTGCGCACGCACAAGGGCGCGGACGACCGCGCCTTCC
GCTCCGTGTACCAGGAGGAGGACGAGCAGCGGATCAAGGGCCTGTCCATCAGCCGCGACC
TGCTGGAGGTGGGCGGCCACGCGCTCAAGACCAACATCACCACGCTGGGGCCCCTGGTGC
TGCCCTTCTCCGAGCAGCTGCTCTTCTTCGCGGGCGTGCTGTTCCGCCACCTGTTCCCGT
CCAAGGCCTCCACGCCGGCGCCGCCGACCACCCCAGGGGACGCCTCGGCCGCCGCGCCCT
ACATCCCGGACTTCAAGCGCGCGTTCGAGCACTTCTGCATGCACGCGGCCAGCCGCGACG
TGCTGGAGCACCTGCAGAGCAACCTGGGCCTGCGCGACGCCGACCTGGAGGCCTCCCGCG
CCGCGCTGCACCGCTTCGGCAACACCTCAAGCAGCAGCATCTGGTACGAGCTGGCGTACC
TGGAGGCCAAGGGCCGCGTCCGCCGCGGCGACCGCGTCTGGCAGCTCGCCTTCGGGTCGG
GCTTCAAGTGCAACAGCGCGGTGTGGCGCGCCGTCCGCCGCGTGCGCCGCCCCGCGCGCA
GCCCCTGGCTGGACTGCATCGACCAGTACCCGGCGCGCATGGACGCCTAGCACGTACCTG
CAATGCAATGGCTGCTATCTATCTATCGCTCGCTTCGCTATCTACCAGTGCAGTGCTGCA
CTTCACCGATGCATGATGGATCGGATATGATATGGTATAGGACGCAGTCGGTCGATTTGC
ATGCATGCACCAAGTGTTACTATACCGTTCTGAAGGTACGTTTGAACTTTGTTCGTTTGT
ATTGCACTATTGCTTGTTGTTTAAGTAGCGGTTAAGGGAGGGAGTCGTACGCTGTGCTAC
CATAATGGAAGTACTCCGGTCCGGTCCGGTCCTGTGTGAGCCTTATGTACGTGCAATTTT
AATGTCTTTTGATATTACAAGA