Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027893_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:1:16951161:16955122:1 gene:Zm00001d027893 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lipoxygenase9 description: lipoxygenase9
Sequence

ATGCTAGCTGAGAGCAGAGTAGAGAAACCTCACAGGATATATGTACCTCGGGATGAGGCG
TTTGAGGAGCTGAAGCAAGGTGCCTTCTCATCAGGGAGGCTGCGGGCAGTACTTCATACG
CTTATCCCATCGATGATTGCAACCATCTCAGCTGAGACCCACAGCTTCCAAGGCTTTCAC
CACGTTGATAATCTATACAAGGAAGGCCTCAGGCTGAAGTTGGGTCTCCAGGAGCACCTG
TTCCAGAAAATACCCCTTGTTCAGAAGATTCAGGAATCAAGTGAGGGGATGCTTCGCTAT
GATACACCTAGAATTCTTTCCAAGGACAAGTTTGCATGGCTCCGTGACGATGAGTTTGCT
CGACAGACTGTGGCAGGAATAAACCCAGTTAGCATCACCAGGCTCACGGTTTTCCCACCA
GTAAGCAAGATGGATCCTGCAATCTATGGCCCGCCAGAATCATCGATCACAGAAGCGCAC
ATCACTGGACAGCTCAATGGACTCACGGTACAACAGGCGGTGGACGAGGCAAAGCTGTTC
ATATTGGACTACCATGATGTATATATGCCATTCCTGGACCGGATCAATGCAATAGAGGGG
CGGAAGGCGTATGCAACCCGGACAATCTTGTTTCTTACCAAAGCTGGCACATTGAAACCG
ATTGCTATTGAACTTAGCCTTCCTCCGAGCAAGGCAGGCGAGCCCCGGCCAAGCAAGGTC
CTTACTCCTCCCGCTGATGCTACCTCCAATTGGCTATGGATGCTTGCCAAAGCTCATGTC
AGCTCCAACGACGCCGGTGTTCACCAGCTCGTTAATCACTGGCTGAGGACACATGCTGTA
ATGGAGCCGTTCATATTGGCAGCGCATCGGCGTATGAGCGCAATGCACCCAGTCTTCAAG
CTCCTGCACCCCCACATGCGGTACACGCTGGAGATCAATGCGCTAGCACGGCAGAGCCTG
ATCAGCGCGGACGGTGTCATCGAGTCGTGCTTCACCCCTGGTCCCGTCTCCTTCGAGATC
AGCGCTGCATACTACCGCGACCACTGGCGGTTCGACCTAGAGGGCCTCCCTTCTGACCTC
GTCCGCAGGAGAGTGGCCGTGGAGGATGCGTCGCAGCCTCATGGCATCAGACTCCTCATC
GAGGACTACCCTTACGCAAACGACGGGCTCCTGCTGTGGTCGGCCATTCGCAGCTGGGTG
GAGTCGTATGTGCAGCTCTACTACCCGGACGCCGGCACCGTTCAGTCCGACGACGAGCTC
CAAGGGTGGTACCACGAAACGGTCCACGTCGGGCACGCCGACATCCGGCACGCGCCCTGG
TGGCCCTCGCTCTCCACGCCGGGGGACCTCGCGTCCATCCTGACCACGCTCGTCTGGCTC
GCGTCGGCGCAGCACGCGGCGCTCAACTTCGGGCAGTACCCGCTGGGCGGGTACGTCCCG
AACCGCCCGCCGCTGATGCGCCGGCTGCTACCGGACCCGGAGCGCGACGCCGCCGAGTAC
GCGACGTTCATGGCGGACCCGCACCGGTTCTTCCTGAACGCGATGCCCGGGCGTGCCTAA

Peptide Sequence

PEP ID

Zm00001d027893_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:1:16951161:16955122:1 gene:Zm00001d027893 transcript:Zm00001d027893_T004 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lipoxygenase9 description: lipoxygenase9
Sequence

MLAESRVEKPHRIYVPRDEAFEELKQGAFSSGRLRAVLHTLIPSMIATISAETHSFQGFH
HVDNLYKEGLRLKLGLQEHLFQKIPLVQKIQESSEGMLRYDTPRILSKDKFAWLRDDEFA
RQTVAGINPVSITRLTVFPPVSKMDPAIYGPPESSITEAHITGQLNGLTVQQAVDEAKLF
ILDYHDVYMPFLDRINAIEGRKAYATRTILFLTKAGTLKPIAIELSLPPSKAGEPRPSKV
LTPPADATSNWLWMLAKAHVSSNDAGVHQLVNHWLRTHAVMEPFILAAHRRMSAMHPVFK
LLHPHMRYTLEINALARQSLISADGVIESCFTPGPVSFEISAAYYRDHWRFDLEGLPSDL
VRRRVAVEDASQPHGIRLLIEDYPYANDGLLLWSAIRSWVESYVQLYYPDAGTVQSDDEL
QGWYHETVHVGHADIRHAPWWPSLSTPGDLASILTTLVWLASAQHAALNFGQYPLGGYVP
NRPPLMRRLLPDPERDAAEYATFMADPHRFFLNAMPGRA

Transcript Sequence

Transcript ID

Zm00001d027893_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:16951161:16955122:1 gene:Zm00001d027893 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lipoxygenase9 description: lipoxygenase9
Sequence

GAGTACGGAAGCTATCTGACAGAATCTATGATTATGCAACATACAATGATTTGGGGAATC
CAGATCGGGGGAAAGAGTTCATCAGGCCAATCCTTGGAGGTGACAACATCCCTTATCCAC
GGCGATGCCGAACTGGTCGCCCACCAACTGATACAAACATGCTAGCTGAGAGCAGAGTAG
AGAAACCTCACAGGATATATGTACCTCGGGATGAGGCGTTTGAGGAGCTGAAGCAAGGTG
CCTTCTCATCAGGGAGGCTGCGGGCAGTACTTCATACGCTTATCCCATCGATGATTGCAA
CCATCTCAGCTGAGACCCACAGCTTCCAAGGCTTTCACCACGTTGATAATCTATACAAGG
AAGGCCTCAGGCTGAAGTTGGGTCTCCAGGAGCACCTGTTCCAGAAAATACCCCTTGTTC
AGAAGATTCAGGAATCAAGTGAGGGGATGCTTCGCTATGATACACCTAGAATTCTTTCCA
AGGACAAGTTTGCATGGCTCCGTGACGATGAGTTTGCTCGACAGACTGTGGCAGGAATAA
ACCCAGTTAGCATCACCAGGCTCACGGTTTTCCCACCAGTAAGCAAGATGGATCCTGCAA
TCTATGGCCCGCCAGAATCATCGATCACAGAAGCGCACATCACTGGACAGCTCAATGGAC
TCACGGTACAACAGGCGGTGGACGAGGCAAAGCTGTTCATATTGGACTACCATGATGTAT
ATATGCCATTCCTGGACCGGATCAATGCAATAGAGGGGCGGAAGGCGTATGCAACCCGGA
CAATCTTGTTTCTTACCAAAGCTGGCACATTGAAACCGATTGCTATTGAACTTAGCCTTC
CTCCGAGCAAGGCAGGCGAGCCCCGGCCAAGCAAGGTCCTTACTCCTCCCGCTGATGCTA
CCTCCAATTGGCTATGGATGCTTGCCAAAGCTCATGTCAGCTCCAACGACGCCGGTGTTC
ACCAGCTCGTTAATCACTGGCTGAGGACACATGCTGTAATGGAGCCGTTCATATTGGCAG
CGCATCGGCGTATGAGCGCAATGCACCCAGTCTTCAAGCTCCTGCACCCCCACATGCGGT
ACACGCTGGAGATCAATGCGCTAGCACGGCAGAGCCTGATCAGCGCGGACGGTGTCATCG
AGTCGTGCTTCACCCCTGGTCCCGTCTCCTTCGAGATCAGCGCTGCATACTACCGCGACC
ACTGGCGGTTCGACCTAGAGGGCCTCCCTTCTGACCTCGTCCGCAGGAGAGTGGCCGTGG
AGGATGCGTCGCAGCCTCATGGCATCAGACTCCTCATCGAGGACTACCCTTACGCAAACG
ACGGGCTCCTGCTGTGGTCGGCCATTCGCAGCTGGGTGGAGTCGTATGTGCAGCTCTACT
ACCCGGACGCCGGCACCGTTCAGTCCGACGACGAGCTCCAAGGGTGGTACCACGAAACGG
TCCACGTCGGGCACGCCGACATCCGGCACGCGCCCTGGTGGCCCTCGCTCTCCACGCCGG
GGGACCTCGCGTCCATCCTGACCACGCTCGTCTGGCTCGCGTCGGCGCAGCACGCGGCGC
TCAACTTCGGGCAGTACCCGCTGGGCGGGTACGTCCCGAACCGCCCGCCGCTGATGCGCC
GGCTGCTACCGGACCCGGAGCGCGACGCCGCCGAGTACGCGACGTTCATGGCGGACCCGC
ACCGGTTCTTCCTGAACGCGATGCCCGGGCGTGCCTAACAGCATCTCCATATGAATGAGT
GCATCGTTCGTTGTTTTTCCACATTTTTTTTCTACGGGTACTATTATGTATTGGTTTTCA
AGCAAATTCGTGCCTACGCCAGCACTTGTAGAGAATACACTACGAACATATATCGAAAAT
ACCAAATCTGCCAAGAATGAGGATTGAACATTCTTGGCCTCCAGGCCGGCTCTTGC