Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027845_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:15013950:15018699:1 gene:Zm00001d027845 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

ATGGCGGTGCCCTCTCCCGCCCCGCGGTCCCCGCGCCGACCGGATGCCATTGTGGCCCCG
GACCCCTCGTCCGCTGACGTGCCACCATCCCTCGACTTCGGCGACCCGGCCTCCCTCGCC
GCGCTCCGAGTCCTCACCGACGCGGGTGCCGCCACCCGCCTCCTCCACGAGTGCGTGGCC
TACCAGCGCGGGCTCGACGCCCGTCTCGACGCTCTCCTCGCCCGCCGTGCTGACCTCGAC
CGCGCCGCTGCTTCGCTCCTCCGCTCTGCCCCGCCTCTGCTCTCGCTCGCGGCTTCCGAC
GCCGCCGCGCTTAAGGAATCCTCCTCCACCACCGCGGCGCTCGCCGACGCGCTCTCGTCC
CGCGTCCGCCATCTCGACGCGGCGCACTCCAGGGCGGACGCTGCGCTGGCACGTGCCGAG
GCCGCGCTCGATCGTTCTCGCGCGCTCGAAGCCGCGCGGCGGGCCTTGGCCGCCGACGAC
CTCGCCGCCGCCGCCACCGCCGTGCACGAATTCCTCGCTATCGACGCTCGGTTCCCCACC
GACGACGATCTCCGCCGCGATCTGCTTGACATGAAACGTCGCCTCGAGGGGCTCGCGCGT
CGGAGGCTAGCGGCGGTCGTTGATGCACAGGACCATCCTGCTGTGCTTCGCCTCGTCCGC
CTATTCCCACTGCTCGGACTCGCTGATGAAGGACTCCAGGTCTACGTCGCCTACCTGAAG
AAGGTTGTCGCTCTGCGTGCCCGCGCAGACTTTGAGCACCTCGCGGAGCTGACCTCCGCG
ACCCAGCCGACCTCTGAGCGGCCGGATTTTGTTGGCTGCCTCACCCGTCTCTTTAAGGAC
ATTGTGCTCGCTGTTGAGGAGAATGATGCTGTGCTTCGTGAGCTCAGGGGAGACGATGGT
GTTGCTTATGCCATCATTGAGCTGCAGGAGGAGTGTGATTCGCGGGGCACCCAGATACTA
CGCCGTTATGCTGATTACAGGAAGCTTGCACGACTTGCATCGGATATAAACTCCTATACA
AAGAACCTCCTTTCGGTCATGGGTTCCATGGCCAGTGCTGCTGGAGGTAGTGAAGGGCCT
GATCCCAGGGAAATTGAGCTTTATCTTGAGGAGATTCTTGCGTTGACCCAGCTTGGTGAG
GACTACACTGAATTTATGGTGAACAAGATCCGTGGATTGAGAGATGTCAAGCCTGAGCTT
GGGCCGCGGGCGATGAAGGCCTTCCGTAATGGTAACTTCTATAAAACGGAGCAGGATCTG
ACTGGGTTCTATGTGATCTTTGAGGAGTTTTTCATGGTGGAGAATGTGAGGAAAGCCATA
CGGATTGATGAGCCCATATCAGATGGTCTCACAACGTCTATGGTGGATGATGTATTCTTT
GTACTGCAGAGTTGCTGCCGCCGGGCTGCTTCCACTGCAAGCATAAACTCTGTTCTTGCT
GTGCTTGGTGGGGCAATGAGCCTTCTAAGCAATGAGTATCAGGAGGCACTACAGTGGAGG
ATGCGGGAGCCAAATTTGGGTGCAAAGCTCTTCCTTGGTGGTGTTGGAGTGCAGAAGACA
GGTGAGGAGATTGCGACTGCACTGAACAACATTGACATTAGCTCTGAGTATGTTCTGAAG
CTCCGTCATGAGATTGAGGAGCTCTGCGTGGAGGTTTTTCATACTCCAGCTGATCGAGAG
AAGATCAAGTCCTGTTTATCAGAGCTAGGAGAGGTCAGTGCTTCATTTAAGAAGATCCTT
CATTCTGCACTGGAGCATTTGGTGGCATCTGTGGTACCACGCATTCGTCCAGTCCTTGAC
ACTGTTGCTACTGTCAGTTATGAGTTGGATGATACTGAATATGGGGAAAATGAGGTGAAC
GATCCATGGGTGCAGAAGCTTATACTTACAGTTAACACTAATGTTGCTTGGCTCCAGCCA
GTTATGACATTAAACAACTACGATTCCTTTGTGCACTTGATCATTGACTTCATTGTCAAG
AGGCTCGAGGTGATTATGATGCAGAAGAGGTTCAGCCAGCTCGGCGGGCTCCAGCTGGAT
AAGGAGGTCCGCTCTCTGATCAACCATTTCTCAGAGATGTCCCAGAGACCAGTCAGAGAC
AAGTTCTCTAGGCTTTCGCAGATGTCGACCATTTTGAACTTCGAGCGGGTATCGGAGATA
TTGGATTTCTGGGGTGACAATGCTGGCCATCTGACGTGGCTGTTGACACCTGCAGAGGTG
CGGAGAGTGTTAGGACTTAGGATTGACTTCAGGCCTGAAGCTATTGCTGCTTTGAGGCTC
TGA

Peptide Sequence

PEP ID

Zm00001d027845_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:15013950:15018699:1 gene:Zm00001d027845 transcript:Zm00001d027845_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

MAVPSPAPRSPRRPDAIVAPDPSSADVPPSLDFGDPASLAALRVLTDAGAATRLLHECVA
YQRGLDARLDALLARRADLDRAAASLLRSAPPLLSLAASDAAALKESSSTTAALADALSS
RVRHLDAAHSRADAALARAEAALDRSRALEAARRALAADDLAAAATAVHEFLAIDARFPT
DDDLRRDLLDMKRRLEGLARRRLAAVVDAQDHPAVLRLVRLFPLLGLADEGLQVYVAYLK
KVVALRARADFEHLAELTSATQPTSERPDFVGCLTRLFKDIVLAVEENDAVLRELRGDDG
VAYAIIELQEECDSRGTQILRRYADYRKLARLASDINSYTKNLLSVMGSMASAAGGSEGP
DPREIELYLEEILALTQLGEDYTEFMVNKIRGLRDVKPELGPRAMKAFRNGNFYKTEQDL
TGFYVIFEEFFMVENVRKAIRIDEPISDGLTTSMVDDVFFVLQSCCRRAASTASINSVLA
VLGGAMSLLSNEYQEALQWRMREPNLGAKLFLGGVGVQKTGEEIATALNNIDISSEYVLK
LRHEIEELCVEVFHTPADREKIKSCLSELGEVSASFKKILHSALEHLVASVVPRIRPVLD
TVATVSYELDDTEYGENEVNDPWVQKLILTVNTNVAWLQPVMTLNNYDSFVHLIIDFIVK
RLEVIMMQKRFSQLGGLQLDKEVRSLINHFSEMSQRPVRDKFSRLSQMSTILNFERVSEI
LDFWGDNAGHLTWLLTPAEVRRVLGLRIDFRPEAIAALRL

Transcript Sequence

Transcript ID

Zm00001d027845_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:15013950:15018699:1 gene:Zm00001d027845 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

GAGATCTGGTCTTCTCGGTGTCCAACGGTCCACAGCCCAACCCTCTCGAGTCTCGTCTTC
TCCCCCGGACTCCGAGATCTTGCCGATCTGCACCGACGCCGCGGTCCGCGGCCATGGCGG
TGCCCTCTCCCGCCCCGCGGTCCCCGCGCCGACCGGATGCCATTGTGGCCCCGGACCCCT
CGTCCGCTGACGTGCCACCATCCCTCGACTTCGGCGACCCGGCCTCCCTCGCCGCGCTCC
GAGTCCTCACCGACGCGGGTGCCGCCACCCGCCTCCTCCACGAGTGCGTGGCCTACCAGC
GCGGGCTCGACGCCCGTCTCGACGCTCTCCTCGCCCGCCGTGCTGACCTCGACCGCGCCG
CTGCTTCGCTCCTCCGCTCTGCCCCGCCTCTGCTCTCGCTCGCGGCTTCCGACGCCGCCG
CGCTTAAGGAATCCTCCTCCACCACCGCGGCGCTCGCCGACGCGCTCTCGTCCCGCGTCC
GCCATCTCGACGCGGCGCACTCCAGGGCGGACGCTGCGCTGGCACGTGCCGAGGCCGCGC
TCGATCGTTCTCGCGCGCTCGAAGCCGCGCGGCGGGCCTTGGCCGCCGACGACCTCGCCG
CCGCCGCCACCGCCGTGCACGAATTCCTCGCTATCGACGCTCGGTTCCCCACCGACGACG
ATCTCCGCCGCGATCTGCTTGACATGAAACGTCGCCTCGAGGGGCTCGCGCGTCGGAGGC
TAGCGGCGGTCGTTGATGCACAGGACCATCCTGCTGTGCTTCGCCTCGTCCGCCTATTCC
CACTGCTCGGACTCGCTGATGAAGGACTCCAGGTCTACGTCGCCTACCTGAAGAAGGTTG
TCGCTCTGCGTGCCCGCGCAGACTTTGAGCACCTCGCGGAGCTGACCTCCGCGACCCAGC
CGACCTCTGAGCGGCCGGATTTTGTTGGCTGCCTCACCCGTCTCTTTAAGGACATTGTGC
TCGCTGTTGAGGAGAATGATGCTGTGCTTCGTGAGCTCAGGGGAGACGATGGTGTTGCTT
ATGCCATCATTGAGCTGCAGGAGGAGTGTGATTCGCGGGGCACCCAGATACTACGCCGTT
ATGCTGATTACAGGAAGCTTGCACGACTTGCATCGGATATAAACTCCTATACAAAGAACC
TCCTTTCGGTCATGGGTTCCATGGCCAGTGCTGCTGGAGGTAGTGAAGGGCCTGATCCCA
GGGAAATTGAGCTTTATCTTGAGGAGATTCTTGCGTTGACCCAGCTTGGTGAGGACTACA
CTGAATTTATGGTGAACAAGATCCGTGGATTGAGAGATGTCAAGCCTGAGCTTGGGCCGC
GGGCGATGAAGGCCTTCCGTAATGGTAACTTCTATAAAACGGAGCAGGATCTGACTGGGT
TCTATGTGATCTTTGAGGAGTTTTTCATGGTGGAGAATGTGAGGAAAGCCATACGGATTG
ATGAGCCCATATCAGATGGTCTCACAACGTCTATGGTGGATGATGTATTCTTTGTACTGC
AGAGTTGCTGCCGCCGGGCTGCTTCCACTGCAAGCATAAACTCTGTTCTTGCTGTGCTTG
GTGGGGCAATGAGCCTTCTAAGCAATGAGTATCAGGAGGCACTACAGTGGAGGATGCGGG
AGCCAAATTTGGGTGCAAAGCTCTTCCTTGGTGGTGTTGGAGTGCAGAAGACAGGTGAGG
AGATTGCGACTGCACTGAACAACATTGACATTAGCTCTGAGTATGTTCTGAAGCTCCGTC
ATGAGATTGAGGAGCTCTGCGTGGAGGTTTTTCATACTCCAGCTGATCGAGAGAAGATCA
AGTCCTGTTTATCAGAGCTAGGAGAGGTCAGTGCTTCATTTAAGAAGATCCTTCATTCTG
CACTGGAGCATTTGGTGGCATCTGTGGTACCACGCATTCGTCCAGTCCTTGACACTGTTG
CTACTGTCAGTTATGAGTTGGATGATACTGAATATGGGGAAAATGAGGTGAACGATCCAT
GGGTGCAGAAGCTTATACTTACAGTTAACACTAATGTTGCTTGGCTCCAGCCAGTTATGA
CATTAAACAACTACGATTCCTTTGTGCACTTGATCATTGACTTCATTGTCAAGAGGCTCG
AGGTGATTATGATGCAGAAGAGGTTCAGCCAGCTCGGCGGGCTCCAGCTGGATAAGGAGG
TCCGCTCTCTGATCAACCATTTCTCAGAGATGTCCCAGAGACCAGTCAGAGACAAGTTCT
CTAGGCTTTCGCAGATGTCGACCATTTTGAACTTCGAGCGGGTATCGGAGATATTGGATT
TCTGGGGTGACAATGCTGGCCATCTGACGTGGCTGTTGACACCTGCAGAGGTGCGGAGAG
TGTTAGGACTTAGGATTGACTTCAGGCCTGAAGCTATTGCTGCTTTGAGGCTCTGAATCG
TGCATTTATTTGTACTTGTTAATTCATTATATGTGATATATAGCAACGAGATGCCTTAGA
AAATTTTGTTGTAATGACGAAAGACCTGCATCGTAGAAGAAGTCTGCGACCATATCTGTG
TGTCTGTTATGAGCTTATGATATTGCGAACTGGCGATGCTTGTGTCCATCCATGCCGCAA
GCTGTAATATTTTCTTCTAATAAGCTTTTATACATTGCCTC