Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027801_T019
CDS Infomation

cds chromosome:B73_RefGen_v4:1:13820473:13827407:1 gene:Zm00001d027801 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA topoisomerase 3-alpha
Sequence

ATGACATTGATATCCAACTTTTTGTATCCTTTATTAACCAAATACAAAACTAACTTGACC
TATCAATTCAAAATCATGCAGTTTGTTCCGACAACTTTAACACTTGATTCTGGAGTGACT
CGGCCACCGCCTCTTCTGGCTGAAGCCGACCTTCTTAGCTGTATGGATAAAGCAGGAATT
GGCACTGATGCAACCATGCATGATCACATAAAAAAGTTGCTTGACCGTTGTTATGCAACC
AAAGATGAAAACACACGTTTCTCCCCGACAAATCTTGGTGAGGCATTGGTGATGGGTTAT
GATGAAATGGGGTATGAGCTTTGGAAGCCTTATTTAAGATCAATGATGGAAGCTGATATG
AAATCAGTTAGCGTGGGTACTAAGAGTAAATCAGAAGTACTTGAGAGTTGTTTGCAGCAG
ATGAAGGCCTGTTTTCTTGACGCAAGGGTGAAGAAAGCAAAACTCCTTGATGCAATGGGG
ACATTCTTTGCAAGGTCTAATAGGCCTATAAATGAAACTCAAAATCCAGTAGAGGTTGTG
AGGCCTTGTGGTGCATGCAATGGATCTGAAATGTTGCTTAAGCGAAGGGCGAGTGGTGAA
TTTATGGTTGGGTGCCGAAGTTATCCACAATGTAGAAACGTGGTATGGCTCCCAGGATCT
CTTTCAGAAGCGGCTGTAACTAATCAAGTTTGTCCTATCTGCGCACCAGGCCCTGTTTAT
AAGATTCAATTCAAGTTCCGTCGGAGGGATATTCCACCAAATTTCGATGTTGATCACCTA
GGTTGTGTTGGTGGTTGTGATGATATCCTCAAAGACCTTATGGAGATAAGTAGGTTTGGA
AGTCGCAGCCAGGCTGCAACACCAGCAAGAGGACCAACACCAAATGGTGTGGGTCAGGGG
ACTCCAAGACAGGATTTACATACTATTTTTCGTCCGGCAAGCCAGCTTAATAATGATAAC
CCATCGGTTATGCATTCTCAAGGTTTCCGTTCAACCCATACCCAAAATCCAAGTAATGCA
TCAGATGCAGGTCAAGTGCTGTGCACCTCATGTGGAGCGCTTTGCATATCACGAATTGCT
AATACAGAGGCTAACAGGGGGAGGAGGTTCTACAAATGTCAAGATCCTGGCTGTGGCTTC
TTCAAATGGGAAGACGAAGTGGACAATGGTACGGGGAGAGGCCGCCGTGGGCGCGGCAGC
AGCAGGCAGGCGTCTGCGTCTGCATCTGCAGGACGGAGAGGCGGAGGCCGGAGAGGCAGA
GGCCGTAACGCTGACGGCGGGATGTTCGTTTCAGCGACGGGCGACACCGTGCTCGGCTGC
TGCTTTAACTGCGGCGATCCTTCCCACTTCGCAAACGCCTGCCCGAACCGGAGATAG

Peptide Sequence

PEP ID

Zm00001d027801_P019
PEP Infomation

pep chromosome:B73_RefGen_v4:1:13820473:13827407:1 gene:Zm00001d027801 transcript:Zm00001d027801_T019 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA topoisomerase 3-alpha
Sequence

MTLISNFLYPLLTKYKTNLTYQFKIMQFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGI
GTDATMHDHIKKLLDRCYATKDENTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADM
KSVSVGTKSKSEVLESCLQQMKACFLDARVKKAKLLDAMGTFFARSNRPINETQNPVEVV
RPCGACNGSEMLLKRRASGEFMVGCRSYPQCRNVVWLPGSLSEAAVTNQVCPICAPGPVY
KIQFKFRRRDIPPNFDVDHLGCVGGCDDILKDLMEISRFGSRSQAATPARGPTPNGVGQG
TPRQDLHTIFRPASQLNNDNPSVMHSQGFRSTHTQNPSNASDAGQVLCTSCGALCISRIA
NTEANRGRRFYKCQDPGCGFFKWEDEVDNGTGRGRRGRGSSRQASASASAGRRGGGRRGR
GRNADGGMFVSATGDTVLGCCFNCGDPSHFANACPNRR

Transcript Sequence

Transcript ID

Zm00001d027801_T019
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:13820473:13827407:1 gene:Zm00001d027801 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA topoisomerase 3-alpha
Sequence

GCGCGCGCCTAGCTCGCCTACGCGGCCGCCTGGGCTCCCGGGCGCGCGGAATCGCTGCGG
AATCGCCGCTCGGCGCCGCCTAGGCGCTCCAAACGCCTAGCAGCCCGCCTACCCCCCTAG
TCCAGGCGGGAGGCCGTGGCCTAGCGCCTAGGCGCGCCTAGGCGCGTCGTAATCGTGGAT
TTTCAAAACCCTGTTTTGAATACATGTCTATCCTTGACCTAGGCAATCGTACGTGAACAA
GTGAATCATCCAGTTTGGGGAGCATATGCTCAGCGACTTCTAAATCCTGAAGCAAGACTT
TGGAGGAATCCCAGTAATGGTGGTCATGATGACAAGGCACATCCTCCTATTCATCCAACC
AAATTTTCAGAAGGTGAAAGAAACTGGAGTCCAGACCACACTAGATTGTATGAGTTTGTT
GTCCGACATTTCCTTGCATGTTGCTCTCAACCGGCCGTTGGAGCTGAAACAACTGTGGAA
ATTGACATAGCTGGTGAACAGTTTAATGCATCAGGGCGTGTCATACTTGCTGTGAGTATC
CTGTTTTGTTGCTTGCCTTTAATTGGCCACCAATGATATCAATACTTCAAACGAACATAT
TCCTTCAGTTTCTCTGGTGCTACATGTCCTAGGATCTGTTGAAAAATTACTTCTGCCATT
ATTCTACACATCTGTAGAGTACAAGTAGGCTAAAATATGTAACCAGCAAGGTCTAATGAT
GCAAGTTAGTACACAGATGTAGCATTAGCAGATTTCCTTAATGTGAAGCTACACTATAAG
GCCTGGATAGTTGTTTCTATATGAGCATGAAGCTGTGAAACCCCTTTAAGAATTCTAATT
TTGCCAATTTTAGTACGCTAATATTTATTCAAAATGGAAAAGGTAAGGGGGGAATTTCTG
CAAATGTGAATTGGACAACTAACATGCATGTCCTCTTTTTGGTTTTACCAAAAAGGTATT
TTAGTAACAAAAAAATTGCTAGTGTTAGTGTTTTATTTGAATGTGCCTTCATTTGAATAT
ACAGCTTTAACTGATTTGCTGTGAGAAGGGTCAAAGGTCATTTATGCAATGGTGCTGGGT
CAATTATACCTAATATCTTTGAATGGGAGGAGTATTTTGTTAATAAATGTGTGGTTCATA
TTGAAGTGTATAAGTGGATTACCTACATTTTCCTAATAGCTTAAGCTTTTAGGTTAAACT
GGTCAGTGTGTCCACTCTAACATGGTATCAGAGTCAGAGGTCTCGAGTTTGAATCCTGGC
AGAGGCTTTATTTGTGCCTCTGCCCCTTTATTTCCACGTTTGTACCTTTCTTTGTGGCTG
CATGTGAGTGGGGGTGTTGAAGTGTTTAAGTCATGGTTATTAAAGCGGTAAAACGTTAAA
ACGTTATGAACGAACGTTGAAACGTCTTTTCAGACATTACATAAAATTTCAATTATAGAA
TATGTTCATACATAAGTTAAGTACTTGAGTTTGAGTTCACAAAACAAAATGAAACAGATC
AAGTTCAACCACACAAGTTACAACTTGTATATATGATCAGTAACCATAAACTCCTAATGA
CTGAAAGTCTGAAACTAGGGAGGGCATCACTGTCTGAACTGGAAGACTGAACCTGGAACT
CTTGATGATTGAAAGTCTAAAACTAGGGAGGGTGGCGCTTCACTGGCCTGGCAGCGCTGG
AATGTTGGAGGATGGAGAGGGAGGAGGAGGCAGAGGAGAGGAGAGGAGAGGAGAGGAGGG
AGGCTGTCAGCACTGGACGCCTGGCAGCCCTGTGTATTTTTTGGCCTGTGAAAGGCCCAA
TAACACGTAGAACGTTCTGAACACGCCTAGAATGTCCGAAAACGAGAAAACGACGTTTAA
GCGAAGTTTAAACGTGATAAACGGACGTTCTACGCGTTTTTGCTAAAACGACCGGACGTT
TGTCGTTTAAACGACGTTTAAGCGAAGTTTTAATAACAATGGTTTGAGTTGAACTGGTTA
ATGCATTCACTCTATCAGTTCACGATTGTTCCTTCCTTATATTTGGTAGTATTTAATAAT
ATGTACTCTCTCCTTTCCAAATTATAAGTTGTTCAGGTATAGACATAGTGTATAACTAGA
TGAATAGCAAAAGCTATGCAACTAGAAAAGCCTGAATAACTTATAATTTGGAACAGAGGA
AGTATTTAACAAGTTCATTAGTAAACCAGTTAACCGTGGATACAGGAAAAACTGTTGTAC
CCAAGGAACCTCAGCAAGTCATCTTTTTTTCACTTTCATATATTATTTATGTATTATCAC
GAAAATTCATACTGATAATAGGATGCTTCCATTAGTTGCTTCACCTGGATCTGGCGATTG
TTCTTCTTTCAAAGAAATGTTTTCTTCTTGTAGAAAAATTATCTGGATGTTTACCGCTTT
GACTCATGGGGTGGAACGTTACTTCCAACATACAACATTGGGCAGCAGGTTTGCTGTAGT
TATATTTCACACTGCACATTTTTTTTGGTTAAGTCATTTTCTTACTAAGATTTTATTGTG
CATGACGGTTAACAAAAACTGGTTAAAGACTGCAGATAAATTCATAATATGAATTGAAAA
TATGGCCCTTTCTCTGTATTAATAAGTTAATATTACTAATGATGTATATCTAAAAATATG
CAATATGTGCAGCCGTGTGTAATTTGTTGCAATATGTATGGAGTTACTCAATATTAGGCC
GAACCATTCACGTCTCGTAAAATGAAGCGGTGCTCCAGCAGAATGCGAGCAGGAGAGAGA
ACGCGTGAATATGTGGCACGAAGGAAGGGAGCGTGGATGATGTGTAGCCACATACACAGT
CTACTGGATGTGCTACAGTGTATTTTGATTGCGCAAATTGCCGATGCAAACTCAGATACG
GCAGCTGCTGGAAATAGCCTTAGTTGGGTCTATTGTGGACCTCTATTTTTCTTCTTAATA
TAATGACGCCTCGTGCGCGTTCGAGAAACATAGTTGCTTGATTTATCTTAGAGATGACAT
TGATATCCAACTTTTTGTATCCTTTATTAACCAAATACAAAACTAACTTGACCTATCAAT
TCAAAATCATGCAGTTTGTTCCGACAACTTTAACACTTGATTCTGGAGTGACTCGGCCAC
CGCCTCTTCTGGCTGAAGCCGACCTTCTTAGCTGTATGGATAAAGCAGGAATTGGCACTG
ATGCAACCATGCATGATCACATAAAAAAGTTGCTTGACCGTTGTTATGCAACCAAAGATG
AAAACACACGTTTCTCCCCGACAAATCTTGGTGAGGCATTGGTGATGGGTTATGATGAAA
TGGGGTATGAGCTTTGGAAGCCTTATTTAAGATCAATGATGGAAGCTGATATGAAATCAG
TTAGCGTGGGTACTAAGAGTAAATCAGAAGTACTTGAGAGTTGTTTGCAGCAGATGAAGG
CCTGTTTTCTTGACGCAAGGGTGAAGAAAGCAAAACTCCTTGATGCAATGGGGACATTCT
TTGCAAGGTCTAATAGGCCTATAAATGAAACTCAAAATCCAGTAGAGGTTGTGAGGCCTT
GTGGTGCATGCAATGGATCTGAAATGTTGCTTAAGCGAAGGGCGAGTGGTGAATTTATGG
TTGGGTGCCGAAGTTATCCACAATGTAGAAACGTGGTATGGCTCCCAGGATCTCTTTCAG
AAGCGGCTGTAACTAATCAAGTTTGTCCTATCTGCGCACCAGGCCCTGTTTATAAGATTC
AATTCAAGTTCCGTCGGAGGGATATTCCACCAAATTTCGATGTTGATCACCTAGGTTGTG
TTGGTGGTTGTGATGATATCCTCAAAGACCTTATGGAGATAAGTAGGTTTGGAAGTCGCA
GCCAGGCTGCAACACCAGCAAGAGGACCAACACCAAATGGTGTGGGTCAGGGGACTCCAA
GACAGGATTTACATACTATTTTTCGTCCGGCAAGCCAGCTTAATAATGATAACCCATCGG
TTATGCATTCTCAAGGTTTCCGTTCAACCCATACCCAAAATCCAAGTAATGCATCAGATG
CAGGTCAAGTGCTGTGCACCTCATGTGGAGCGCTTTGCATATCACGAATTGCTAATACAG
AGGCTAACAGGGGGAGGAGGTTCTACAAATGTCAAGATCCTGGCTGTGGCTTCTTCAAAT
GGGAAGACGAAGTGGACAATGGTACGGGGAGAGGCCGCCGTGGGCGCGGCAGCAGCAGGC
AGGCGTCTGCGTCTGCATCTGCAGGACGGAGAGGCGGAGGCCGGAGAGGCAGAGGCCGTA
ACGCTGACGGCGGGATGTTCGTTTCAGCGACGGGCGACACCGTGCTCGGCTGCTGCTTTA
ACTGCGGCGATCCTTCCCACTTCGCAAACGCCTGCCCGAACCGGAGATAGTTATCAGGGA
GCTGCTCGCTATGCGTGTACAGAGACTGGCAGCGTCCGCCAAACGATGAAGCCTTCGGAT
GGTTTTCGTGTACTGAGGTGCATATAAGTGCACCTGACAAGCTCATTTTCTAGACAATTA
CTAATATTT