Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d027748_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:1:12538586:12543035:-1 gene:Zm00001d027748 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable RNA helicase SDE3
Sequence	ATGGGGGTTCACCGTAGGAATTATTCAGATGATGAATTTTCAGTTGCTGGCGAGAGGCCA GAAGTAGAATTCATGGACTTCCAGAACGACGACACCTTTCAGGATTATTCATGTGAAGAT ACCCCTGTGCTTGTCTCAGCTCCTTTCCCTTTCGAGGATGGAAAACCAAAATCTGCACTT GTCGGAGAAACATCAGCTGATACCATACAGATTGAGAATACCTCTCCTGAATCTGTAAAT CTGTGGAGTGTAAGAATTTTCTCTTCGAACCCAGAAGACAGCTATGTTCTATCAATGATG AGACCACCGTCAGATGATGCTAATGAGGAGGAAAAGCATGCTTTTCTTGCTTTGACGTCC GTGGAAGACCGTACACTTCTGCCTGGACAAACCCTTACAGTTTGGCTGTCTTGTACGCCA AAAGATATTGGCCTGCATACATCAATCGTGCATGTTGATATCGGTGATGAGAAGATTGAG CGTGTGGCTTTTCTTTTGGCAGATGACAATGTCTCCCAGGCCTTATTTTCTGATAAGCCT TATTCCAGGAGACGTGACCAAGTTAAGAAATTTGGGCCTTCTCCAACTGTGCCAGGTCGT CGTCCAACTAAGCAGCACGTTCAAGGATTCAAACATAGGCTTCCTCAGTATGCAATACCT GCGCACATCCGTGAGCTCATTGAAAGTAAACAGAAACCTGATGTCTTATATGATGAGTTG AGCATGGTAAACTATGCAGAATATTTCAGCACTCTTCTAGTCATGGAAGAGCTCAATTTG GAGGAGGAGATGAGAACATATGACATGGAGGGTGTCTTAATGAGAAGGAGGGGTATGCAT TTTTTGTCTCTTGAGGTCCCTGGTTTGGCAGAAAAAAGGCCATCACTAGTCCAAGGAGAC TTCGTAGTTGCTAGATATGCTGGGAATCATGCTCAGGCTTACCAAGGTTTCATTCACAGG GTTGAAGCTGATGAGATATTTTTACAATTTGACCATCAGTTTCACATGAATCATCATGAT AGAAACCGGTACCATGTTAGCTTCACATATAACAGAGTGAACATGAGAAGGCTTTACAAG TCAATTGACGATGCAAAATATTTGGGACCTGGCATTTTGTTTCCTCGCCAATCACCTTGT AGAGTTTTGAAAAGGTGGCCGTTTAATCCTCTGAATCCACATATAAATACTGAGCAAGCT GATGCTGTTGCAATGGTACTTGCCTGCAGAGGAGGTTCACCATATGTGATATATGGACCT CCAGGAACTGGCAAGACCATGACCATTGTAGAAGCCGTTTTGCAGCTTTACACGGGAAAG AAGAGGGCAAATATTCTCATTTGTGCTGCTTCCAATACTGCAGCTGATCATGTACTGGAA AAGCTCCTTCAAGCTAGCTATCTGATCCGGCCAAGTGATATCTTTAGGCTAAATGCTCAG AGTCGCCAATACGAGGATGTCAGTACTGATTTTATCAAGTTTTGCTTCTTTCAAGATCGG GTGTTCATGTGCCCTCCCTTACAAGCATTGGTGCGGTACAGGATAGTCATATCGACCTAT TCGAGTTCCTATCAGCTGCAGGCTGAGGGCATTCGCCAAGGGCATTTCACACACATTTTC CTGGATGAGGCTGGCCAAGCCTCTGAACCAGAGGCGATGGTTCCTTTGTCGGGGCTGTGT GGAAGAGACACTGTGGTTGTGTTAGCAGGAGATCCAAAGCAATTAGGTCCGGTGGTTTAC TGTAAGCAAGCAGAGAAGGATGGTCTGGGGACATCATATCTGGAAAGGCTGCTGACTGAC TTCGAGCCGTACGGAACAAGGAATCCTAACTACGTGACAAAACTGGTGAGGAATTACCGC TGCCATCCTGCAATCCTGGAGCTACCATCAGAGCTTTTCTATGAGGGTGAACTGATTCCC TGTAAAGAAGGAGAGTCATCTGCTTATGATTGCATAGGCCTTCCTGACAAGTCCTTCCCT GTTCTTTTCATCGGAATTCAAGGATGCGATGAGAGGGAAGGCGCCAACCCATCATGGTTC AACAGGATCGAGGTTAGCAAAGTGGTCTCTATCATCAGGAACCTGACAAGGGGCGGGGAC GTTGATGCATCTGATATAGGAGTAATCACTCCGTACCGCCAGCAAGTCGCCAAGATAAAG AAAGCCCTAGAGGCATTCGAAATGCCCGGCCTGAAGGTCGGGAGCGTCGAACAGTTCCAG GGCCAAGAGAGGGAGGTGATAATCATCTCCACAGTCCGGTCGACCGTAAAGCACAACGAG TTCGACAGGTTTTTCAACCTGGGGTTCTTGAGCAACCATAAAAGGTTCAACGTTTCTATC ACCCGCGCGAAATCGTTGCTCGTCATCGTCGGAAACCCTTACATTATCACCAAGGACCGT CACTGGGATAGGCTCCTGCGATACTGCGCTGACAATGGCTCTTATCAAGGATGCCCCCTT CCACCACCGGAATCTCATGCTTATTCAGACGGTACCAGATTCTTCTCCGAGCATGACGAC GGGCATCAAGCTGGACCTTCTGGGCAGGACGACTACTACAACCAAGAAGCCACCTACTGC AGCTACAACAACCAAGAGCCTTCTGACTTCGGTTTCAGGCTTGGCAGTGGTGCTGAACCT GCTTCGGAGAACCAAGAGTTACCGTCCGAGGAGCTGCCTGAGGACGAGAAGCAGCCATTA TTCAGCAACCCCCAAGCGGATCTCGAGGAGACGCCGAAGCAGGACGTCGTCGAGGAAGGG GCTGCACAGGGAGGCGTGCTGGCCGACCCGACATCGTCGACAACCGCCGACGATCAGCTC CAGGGTGCATATGCGGAGAAGTACAGCTTCCCTCCTGGCTGGTGCGACGTTTCGAGCATC CCGGCGCAAGGCTGGGGCGACTGA

Peptide Sequence

PEP ID	Zm00001d027748_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:1:12538586:12543035:-1 gene:Zm00001d027748 transcript:Zm00001d027748_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable RNA helicase SDE3
Sequence	MGVHRRNYSDDEFSVAGERPEVEFMDFQNDDTFQDYSCEDTPVLVSAPFPFEDGKPKSAL VGETSADTIQIENTSPESVNLWSVRIFSSNPEDSYVLSMMRPPSDDANEEEKHAFLALTS VEDRTLLPGQTLTVWLSCTPKDIGLHTSIVHVDIGDEKIERVAFLLADDNVSQALFSDKP YSRRRDQVKKFGPSPTVPGRRPTKQHVQGFKHRLPQYAIPAHIRELIESKQKPDVLYDEL SMVNYAEYFSTLLVMEELNLEEEMRTYDMEGVLMRRRGMHFLSLEVPGLAEKRPSLVQGD FVVARYAGNHAQAYQGFIHRVEADEIFLQFDHQFHMNHHDRNRYHVSFTYNRVNMRRLYK SIDDAKYLGPGILFPRQSPCRVLKRWPFNPLNPHINTEQADAVAMVLACRGGSPYVIYGP PGTGKTMTIVEAVLQLYTGKKRANILICAASNTAADHVLEKLLQASYLIRPSDIFRLNAQ SRQYEDVSTDFIKFCFFQDRVFMCPPLQALVRYRIVISTYSSSYQLQAEGIRQGHFTHIF LDEAGQASEPEAMVPLSGLCGRDTVVVLAGDPKQLGPVVYCKQAEKDGLGTSYLERLLTD FEPYGTRNPNYVTKLVRNYRCHPAILELPSELFYEGELIPCKEGESSAYDCIGLPDKSFP VLFIGIQGCDEREGANPSWFNRIEVSKVVSIIRNLTRGGDVDASDIGVITPYRQQVAKIK KALEAFEMPGLKVGSVEQFQGQEREVIIISTVRSTVKHNEFDRFFNLGFLSNHKRFNVSI TRAKSLLVIVGNPYIITKDRHWDRLLRYCADNGSYQGCPLPPPESHAYSDGTRFFSEHDD GHQAGPSGQDDYYNQEATYCSYNNQEPSDFGFRLGSGAEPASENQELPSEELPEDEKQPL FSNPQADLEETPKQDVVEEGAAQGGVLADPTSSTTADDQLQGAYAEKYSFPPGWCDVSSI PAQGWGD

Transcript Sequence

Transcript ID	Zm00001d027748_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:12538586:12543035:-1 gene:Zm00001d027748 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable RNA helicase SDE3
Sequence	ATTCGAATTCGTAGAGACAAAACACTTCTAAGGTAGGTAAGGGTTAAAGCCAAAACAGAC TCAGGAGGCCGTGGAGATAGCCTATTGTCTGCCGAATCTTCTTTCTGTCTTCATGGCAGT GCCGGACATAGTTGCAGTTGGAACTTCTACGGAGGAACACACACAGTGCCGGTGCGAATC AATGGTGGTTTCATGACCTCTTGATTCGCTTCGTCTACCTCCGTGCCCCGGTGTAGTAGC CTCGTCGGATCCTTCGCCAGGTCTTCCTCGGGCCCTGCGCCGGCGAGGAGCGCCTACTAG GTATGCGCGCTCCTCCTCCTCCCTTCATTCCTGCTGCGCGAAAACCGGGCATCCGAACCG TAACCTGAACTGTTTGGGTTTGGGTATGTGTATTCGGATCTGATCTAATTACAAGTGAGT GTATATTATGTACTGCGTCTGCCGATTCATCTGGGCTACTAGGATATGCAGAGTGATTGC TGCAGCTTTGAGATGCCTCATTATATAACTGCTTCATCACATAAGTCGTGTGCAAAAAAA GGAAGTGGAGTAATGCAGTGCCAAAACGCCTCTGGGAGTAGTTTGGTGTGAAGGGGAAAT CTCTATCTATAGCTCAACAAAACAGCAGCTCTTGAGATGCATGATTCTGGGAACCGCACT GACTTGGTGATTGCCACAGGGTGTGAGTATATCGTGTCTATTTCACATAGTTGGTTTTAC CGTTATAGTGTATTTGGTGTCTGGGGTGTGGTGCAATATTTGTTTGTATGCTTGTTGTCC ACTTGTCCTAGTTGTAGATGGTCGTAATACCACGAGTAGAATGTTTTCCCTTTTCTTTTT GGACTTAATTTTTAATTCTAACTTTTGATTGTTGTTGTTTTTTTTTAAAAAAAAAACTGT TACTACAATTTTTGCTTCTCAGGATTCAAGATGGGGGTTCACCGTAGGAATTATTCAGAT GATGAATTTTCAGTTGCTGGCGAGAGGCCAGAAGTAGAATTCATGGACTTCCAGAACGAC GACACCTTTCAGGATTATTCATGTGAAGATACCCCTGTGCTTGTCTCAGCTCCTTTCCCT TTCGAGGATGGAAAACCAAAATCTGCACTTGTCGGAGAAACATCAGCTGATACCATACAG ATTGAGAATACCTCTCCTGAATCTGTAAATCTGTGGAGTGTAAGAATTTTCTCTTCGAAC CCAGAAGACAGCTATGTTCTATCAATGATGAGACCACCGTCAGATGATGCTAATGAGGAG GAAAAGCATGCTTTTCTTGCTTTGACGTCCGTGGAAGACCGTACACTTCTGCCTGGACAA ACCCTTACAGTTTGGCTGTCTTGTACGCCAAAAGATATTGGCCTGCATACATCAATCGTG CATGTTGATATCGGTGATGAGAAGATTGAGCGTGTGGCTTTTCTTTTGGCAGATGACAAT GTCTCCCAGGCCTTATTTTCTGATAAGCCTTATTCCAGGAGACGTGACCAAGTTAAGAAA TTTGGGCCTTCTCCAACTGTGCCAGGTCGTCGTCCAACTAAGCAGCACGTTCAAGGATTC AAACATAGGCTTCCTCAGTATGCAATACCTGCGCACATCCGTGAGCTCATTGAAAGTAAA CAGAAACCTGATGTCTTATATGATGAGTTGAGCATGGTAAACTATGCAGAATATTTCAGC ACTCTTCTAGTCATGGAAGAGCTCAATTTGGAGGAGGAGATGAGAACATATGACATGGAG GGTGTCTTAATGAGAAGGAGGGGTATGCATTTTTTGTCTCTTGAGGTCCCTGGTTTGGCA GAAAAAAGGCCATCACTAGTCCAAGGAGACTTCGTAGTTGCTAGATATGCTGGGAATCAT GCTCAGGCTTACCAAGGTTTCATTCACAGGGTTGAAGCTGATGAGATATTTTTACAATTT GACCATCAGTTTCACATGAATCATCATGATAGAAACCGGTACCATGTTAGCTTCACATAT AACAGAGTGAACATGAGAAGGCTTTACAAGTCAATTGACGATGCAAAATATTTGGGACCT GGCATTTTGTTTCCTCGCCAATCACCTTGTAGAGTTTTGAAAAGGTGGCCGTTTAATCCT CTGAATCCACATATAAATACTGAGCAAGCTGATGCTGTTGCAATGGTACTTGCCTGCAGA GGAGGTTCACCATATGTGATATATGGACCTCCAGGAACTGGCAAGACCATGACCATTGTA GAAGCCGTTTTGCAGCTTTACACGGGAAAGAAGAGGGCAAATATTCTCATTTGTGCTGCT TCCAATACTGCAGCTGATCATGTACTGGAAAAGCTCCTTCAAGCTAGCTATCTGATCCGG CCAAGTGATATCTTTAGGCTAAATGCTCAGAGTCGCCAATACGAGGATGTCAGTACTGAT TTTATCAAGTTTTGCTTCTTTCAAGATCGGGTGTTCATGTGCCCTCCCTTACAAGCATTG GTGCGGTACAGGATAGTCATATCGACCTATTCGAGTTCCTATCAGCTGCAGGCTGAGGGC ATTCGCCAAGGGCATTTCACACACATTTTCCTGGATGAGGCTGGCCAAGCCTCTGAACCA GAGGCGATGGTTCCTTTGTCGGGGCTGTGTGGAAGAGACACTGTGGTTGTGTTAGCAGGA GATCCAAAGCAATTAGGTCCGGTGGTTTACTGTAAGCAAGCAGAGAAGGATGGTCTGGGG ACATCATATCTGGAAAGGCTGCTGACTGACTTCGAGCCGTACGGAACAAGGAATCCTAAC TACGTGACAAAACTGGTGAGGAATTACCGCTGCCATCCTGCAATCCTGGAGCTACCATCA GAGCTTTTCTATGAGGGTGAACTGATTCCCTGTAAAGAAGGAGAGTCATCTGCTTATGAT TGCATAGGCCTTCCTGACAAGTCCTTCCCTGTTCTTTTCATCGGAATTCAAGGATGCGAT GAGAGGGAAGGCGCCAACCCATCATGGTTCAACAGGATCGAGGTTAGCAAAGTGGTCTCT ATCATCAGGAACCTGACAAGGGGCGGGGACGTTGATGCATCTGATATAGGAGTAATCACT CCGTACCGCCAGCAAGTCGCCAAGATAAAGAAAGCCCTAGAGGCATTCGAAATGCCCGGC CTGAAGGTCGGGAGCGTCGAACAGTTCCAGGGCCAAGAGAGGGAGGTGATAATCATCTCC ACAGTCCGGTCGACCGTAAAGCACAACGAGTTCGACAGGTTTTTCAACCTGGGGTTCTTG AGCAACCATAAAAGGTTCAACGTTTCTATCACCCGCGCGAAATCGTTGCTCGTCATCGTC GGAAACCCTTACATTATCACCAAGGACCGTCACTGGGATAGGCTCCTGCGATACTGCGCT GACAATGGCTCTTATCAAGGATGCCCCCTTCCACCACCGGAATCTCATGCTTATTCAGAC GGTACCAGATTCTTCTCCGAGCATGACGACGGGCATCAAGCTGGACCTTCTGGGCAGGAC GACTACTACAACCAAGAAGCCACCTACTGCAGCTACAACAACCAAGAGCCTTCTGACTTC GGTTTCAGGCTTGGCAGTGGTGCTGAACCTGCTTCGGAGAACCAAGAGTTACCGTCCGAG GAGCTGCCTGAGGACGAGAAGCAGCCATTATTCAGCAACCCCCAAGCGGATCTCGAGGAG ACGCCGAAGCAGGACGTCGTCGAGGAAGGGGCTGCACAGGGAGGCGTGCTGGCCGACCCG ACATCGTCGACAACCGCCGACGATCAGCTCCAGGGTGCATATGCGGAGAAGTACAGCTTC CCTCCTGGCTGGTGCGACGTTTCGAGCATCCCGGCGCAAGGCTGGGGCGACTGATCGTCA GACCTGCGATCGCCATTGGTAGGGGGGGTCATTGGCAGAATAATTGAGGCCGATGACCTT GTGAACCCAGCACCCTCATCGGTGTGTCCCTTTCGTTCCGTCAAGCCTTCGTTCATTTCT CACTGCTGGACAGTTTGTTGCAGCGAGTGAACTGTGGCGTCCATGTGTTTAGGACAGGCC ATCGTGTGTGACTGATGCTGGCAACACGAAACGTACGTGCAATGTGGCGTGGTTATTTTG CGGGTGCC