Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027743_T012
CDS Infomation

cds chromosome:B73_RefGen_v4:1:12504875:12510586:1 gene:Zm00001d027743 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase EDR1
Sequence

ATGGGTGGACCTGTCAAAGATGCTAACGACATGCTCACAAGGTGGCTGGAGAAGAGTACT
GAGTTGAGAACCTCGCTACAAACAAGTTTGTTGCCTATTGGTTGCATCAAGATAGGGCTA
TCACGTCACCGTGCCTTACTTTTCAAGATCCTTGCAGATAGTGTTGGGATTCTATGCAAA
CTTGTCAAAGGGAGCAATTATACTGGTGGTGATGATGACGATGCTATAAACATAATTAAG
ATGGACAATGAAAGGGAGTTTTTGGTTGATCTGATGGCTGCTCCTGGTGCTCTTATTCCA
GCAGATATCTTAAGTTGGAAAGGCAATTCGTTAAATTCTAATAGAAAACTTGGCCTGAGT
CAGACAGCTGGATCATCGAGTACCGTTGGTGCTAATATGGGTCCTAGTGTATTGCCACTT
GAACCTAAAGGTGATCAGCTGCCTTTGTTCAGCAGTGGTGATTGGATATCAGAGAGTGGT
TCTGGATATGGGGCAGCAGAAACTGCAGCTTCTACTCAAACCTCTTCTGGTGCCACATCA
TCTGTTCCTGCTGGAAGTGCTTTTGACAGTTCATGGATGCTGATTAATCATGACCAATCA
GATGGACCATCAACTTCTGCTGGTACATCATCCCAGCAGAAAGTTGTACCTCAAAACGAA
CATCCACGGAATTTAAACCGTCTTCCAGATTTGCAGGAAATTCCAGAGTCAAAAAACCTT
TTTGCTGACCTTAATCCTTTTGGGGATACGAAGTCCAAGAAAACTTCAGTACCATTCAAA
GGACCAGATCAAAGGAACAATGAGTTGCAAAAGCGCAGAGAGAACATTGTCCCTAATGGT
GGAAGACCACAGCAGCGGTTAGTTATGAAGAATTGGTCTCCTTATAATGATGTTTCTAAC
AACAAACAGTACAATTATGTCGAGGATTCATTTGCACGTAGAAATGTTGGCAACAATGCC
GCATCATCATCATCCCAGATAACACAACAAGCCGCAAGGTCTAATCTTAATTCTGGATTG
CGTAATGATGCATCATATCATAATTATGATAGTATTATGGCTGGTACCTCTGCCACGAAT
ATTACATCTACAGCTGAGACTGGGAAGGTTCCTGAAAGGGTTCTGCGTGGTGATTTGGAT
AAAGGTCAAACAAATTATAGACTTCAGGATCAACATGTTGTAGGTCAACCACCACAGGAA
AGACTTCCATGGGGTAATCCTGCTGAAGGAAGAGTTCCAATGAATAGATTTCAGAATCAA
GCAAAACAACACATGGGAAACATTGATACAAAGCAAGACCATAAGAAATTGCTCCCTGAT
CCAAAAAAATCTCCCCTTGACAGATTCATGGACACGTCATTGCCATCAAGAAACTTGGAC
GTGAGGTCACAGAGGCTTGACTTTGATGATGTGTCTGAATGTGAAATTCCTTGGGAAGAT
CTTGTGATTGGTGAAAGGATTGGCTTAGGTTCATATGGAGAGGTTTACCGTGCTGACTGG
AATGGAACAGAAGTAGCTGTAAAAAAATTCTTGGATCAAGATTTCTATGGTGATGCTCTG
GATGAGTTTAGGAGTGAAGTCCGAATTATGCGTCGGCTGCGCCATCCAAATATTGTTCTC
TTTATGGGTGCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGAATACCTTCCAAGG
GGAAGCTTATATAAGATCCTTCACCGCCCTAATTGCCTAATTGATGAAAAGCGGAGGATC
AAGATGGCCCTTGATGTGGCCAAAGGCATGAATTGCCTGCACACTAGTGTACCTACAATT
GTTCATCGGGATCTGAAATCGCCAAACTTGCTGGTTGACAATAATTGGAATGTAAAGGTT
TGCGACTTTGGACTTTCACGGTTAAAGCACAGTACGTTTTTGTCATCCAAATCCACTGCT
GGAACACCTGAGTGGATGGCACCTGAGGTTCTACGGAATGAACAATCGAATGAAAAGTGC
GACGTTTACAGCTTTGGTGTCATATTATGGGAGCTGGCAACGCTTAGAATGCCATGGAGT
GGGATGAATCCAATGCAGGTTGTGGGGGCAGTTGGTTTCCAGGATAGACGGCTTGATATT
CCCAAGGAAGTTGATCCTCTGGTAGCAAGGATCATATTCGAATGCTGGCAGAAGGACCCA
AATCTGCGCCCTTCATTTGCACAGTTAACAAGTGCCCTAAAGACTGTTCAAAGACTAGTG
ACCCCTTCTCACCAGGAGACCCAGAGCCCCCATGTTCATCAAGAAATCTCAGTGAACTTG
ACTCCATAG

Peptide Sequence

PEP ID

Zm00001d027743_P012
PEP Infomation

pep chromosome:B73_RefGen_v4:1:12504875:12510586:1 gene:Zm00001d027743 transcript:Zm00001d027743_T012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase EDR1
Sequence

MGGPVKDANDMLTRWLEKSTELRTSLQTSLLPIGCIKIGLSRHRALLFKILADSVGILCK
LVKGSNYTGGDDDDAINIIKMDNEREFLVDLMAAPGALIPADILSWKGNSLNSNRKLGLS
QTAGSSSTVGANMGPSVLPLEPKGDQLPLFSSGDWISESGSGYGAAETAASTQTSSGATS
SVPAGSAFDSSWMLINHDQSDGPSTSAGTSSQQKVVPQNEHPRNLNRLPDLQEIPESKNL
FADLNPFGDTKSKKTSVPFKGPDQRNNELQKRRENIVPNGGRPQQRLVMKNWSPYNDVSN
NKQYNYVEDSFARRNVGNNAASSSSQITQQAARSNLNSGLRNDASYHNYDSIMAGTSATN
ITSTAETGKVPERVLRGDLDKGQTNYRLQDQHVVGQPPQERLPWGNPAEGRVPMNRFQNQ
AKQHMGNIDTKQDHKKLLPDPKKSPLDRFMDTSLPSRNLDVRSQRLDFDDVSECEIPWED
LVIGERIGLGSYGEVYRADWNGTEVAVKKFLDQDFYGDALDEFRSEVRIMRRLRHPNIVL
FMGAVTRPPNLSIVSEYLPRGSLYKILHRPNCLIDEKRRIKMALDVAKGMNCLHTSVPTI
VHRDLKSPNLLVDNNWNVKVCDFGLSRLKHSTFLSSKSTAGTPEWMAPEVLRNEQSNEKC
DVYSFGVILWELATLRMPWSGMNPMQVVGAVGFQDRRLDIPKEVDPLVARIIFECWQKDP
NLRPSFAQLTSALKTVQRLVTPSHQETQSPHVHQEISVNLTP

Transcript Sequence

Transcript ID

Zm00001d027743_T012
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:12504875:12510586:1 gene:Zm00001d027743 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase EDR1
Sequence

CATCCTGTTGGACTTCCCTGTTGCCAATATTGCACTCTTAGTGCAAAGAATAGCTGAGCT
TGTTACAGATAATATGGGTGGACCTGTCAAAGATGCTAACGACATGCTCACAAGGTGGCT
GGAGAAGAGTACTGAGTTGAGAACCTCGCTACAAACAAGTTTGTTGCCTATTGGTTGCAT
CAAGATAGGGCTATCACGTCACCGTGCCTTACTTTTCAAGATCCTTGCAGATAGTGTTGG
GATTCTATGCAAACTTGTCAAAGGGAGCAATTATACTGGTGGTGATGATGACGATGCTAT
AAACATAATTAAGATGGACAATGAAAGGGAGTTTTTGGTTGATCTGATGGCTGCTCCTGG
TGCTCTTATTCCAGCAGATATCTTAAGTTGGAAAGGCAATTCGTTAAATTCTAATAGAAA
ACTTGGCCTGAGTCAGACAGCTGGATCATCGAGTACCGTTGGTGCTAATATGGGTCCTAG
TGTATTGCCACTTGAACCTAAAGGTGATCAGCTGCCTTTGTTCAGCAGTGGTGATTGGAT
ATCAGAGAGTGGTTCTGGATATGGGGCAGCAGAAACTGCAGCTTCTACTCAAACCTCTTC
TGGTGCCACATCATCTGTTCCTGCTGGAAGTGCTTTTGACAGTTCATGGATGCTGATTAA
TCATGACCAATCAGATGGACCATCAACTTCTGCTGGTACATCATCCCAGCAGAAAGTTGT
ACCTCAAAACGAACATCCACGGAATTTAAACCGTCTTCCAGATTTGCAGGAAATTCCAGA
GTCAAAAAACCTTTTTGCTGACCTTAATCCTTTTGGGGATACGAAGTCCAAGAAAACTTC
AGTACCATTCAAAGGACCAGATCAAAGGAACAATGAGTTGCAAAAGCGCAGAGAGAACAT
TGTCCCTAATGGTGGAAGACCACAGCAGCGGTTAGTTATGAAGAATTGGTCTCCTTATAA
TGATGTTTCTAACAACAAACAGTACAATTATGTCGAGGATTCATTTGCACGTAGAAATGT
TGGCAACAATGCCGCATCATCATCATCCCAGATAACACAACAAGCCGCAAGGTCTAATCT
TAATTCTGGATTGCGTAATGATGCATCATATCATAATTATGATAGTATTATGGCTGGTAC
CTCTGCCACGAATATTACATCTACAGCTGAGACTGGGAAGGTTCCTGAAAGGGTTCTGCG
TGGTGATTTGGATAAAGGTCAAACAAATTATAGACTTCAGGATCAACATGTTGTAGGTCA
ACCACCACAGGAAAGACTTCCATGGGGTAATCCTGCTGAAGGAAGAGTTCCAATGAATAG
ATTTCAGAATCAAGCAAAACAACACATGGGAAACATTGATACAAAGCAAGACCATAAGAA
ATTGCTCCCTGATCCAAAAAAATCTCCCCTTGACAGATTCATGGACACGTCATTGCCATC
AAGAAACTTGGACGTGAGGTCACAGAGGCTTGACTTTGATGATGTGTCTGAATGTGAAAT
TCCTTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGGTTCATATGGAGAGGTTTA
CCGTGCTGACTGGAATGGAACAGAAGTAGCTGTAAAAAAATTCTTGGATCAAGATTTCTA
TGGTGATGCTCTGGATGAGTTTAGGAGTGAAGTCCGAATTATGCGTCGGCTGCGCCATCC
AAATATTGTTCTCTTTATGGGTGCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGA
ATACCTTCCAAGGGGAAGCTTATATAAGATCCTTCACCGCCCTAATTGCCTAATTGATGA
AAAGCGGAGGATCAAGATGGCCCTTGATGTGGCCAAAGGCATGAATTGCCTGCACACTAG
TGTACCTACAATTGTTCATCGGGATCTGAAATCGCCAAACTTGCTGGTTGACAATAATTG
GAATGTAAAGGTTTGCGACTTTGGACTTTCACGGTTAAAGCACAGTACGTTTTTGTCATC
CAAATCCACTGCTGGAACACCTGAGTGGATGGCACCTGAGGTTCTACGGAATGAACAATC
GAATGAAAAGTGCGACGTTTACAGCTTTGGTGTCATATTATGGGAGCTGGCAACGCTTAG
AATGCCATGGAGTGGGATGAATCCAATGCAGGTTGTGGGGGCAGTTGGTTTCCAGGATAG
ACGGCTTGATATTCCCAAGGAAGTTGATCCTCTGGTAGCAAGGATCATATTCGAATGCTG
GCAGAAGGACCCAAATCTGCGCCCTTCATTTGCACAGTTAACAAGTGCCCTAAAGACTGT
TCAAAGACTAGTGACCCCTTCTCACCAGGAGACCCAGAGCCCCCATGTTCATCAAGAAAT
CTCAGTGAACTTGACTCCATAGGAGGGCTGTCAACTTCCCGTTGTGCATAGTTTTTGTTC
TTTTGCCGTTTGTGTTTTGTCCAAGAGCCCGCAAATGCGGGCGCGGCTTGTAGATTGAGC
GCCCCAGGCGGTGGTAGACACTCTGCCGTCTGCGACAAGGACCCCGTGGTAGGGTATGTA
TAGAGTTGCCCATCATCGGGAGAAGTGATTCAGTGTGTAGCAACTGATCGTCAATCCCTC
TTTTAGTCCTTTGTACACCCAACCGGTCGACCGGGTGCGAGCCCTCTGAAAGCAGTGAGC
TCTGTGTTCATTGTGAAGTGCGTGGCTATGCTAAGTGGATTTTCTGTCTTGCTGCGCAAT
AGGCAGCAGCGTATCTGGAAGTTTGAAGCGTTGTAAAACTCTGTACAATCAGGACACTTG
AATACAGGATACATACATTGTGTTCTT